Rh6CG275100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0018201
Physical Location & Seq
Forward (+)
45118951 .. 45120674
1724 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG275100.1

Sequence Viewer

Length: 1161 bp
ATGGTGAGCTTAAGAAGACACAAACGCTCAAGCCTATCCCCTGCTGGAAGTAGTTATGTTCCAGCTCCACTTCCTGGGTTCACTGACAGCGAAATTGACACTCATGCAAAACTTGATTGTGTGCATCCCATGCCTTTGAACGATGAAGATGAACCAGAGGAGCTGAGCTTACCCAAAGAGACCAAGACAGTTTCAGTACTAAACAGTGCCAAGAGGAAAATGAGGAAGATTGATGAGTTGATGAAGATTACTGAAACTGAGGTCATCGAATCACCTAAGGTTGACTTGAAAAAACCCGTGCGTCGATGGAAGAAAGTGCTGGAAAAGAAGAAGTCCCCGAAGGTGTCAGAGGTTACCAAAGATGAACTTGAGAAGATAGTGAAGAAACTAGGGACAAACTCTGACTTCTACCTGAAGGAACTGGATCTGCTCCACAAGAAGAAGGAAAATGAGAGCAAGCTAACGACCGAGCTGATCAAGACCTGCCAAAAAGAGTTGAAAGAGGCTGAAGACAATAATCATGCCTTCTCGTGGGATTACTGTCTCCTGGATAAGTCCTATGTCCAGTCTTTGGAAAATATATGGCTAGAAGGTGAAGACCAGAATGTGGATGACGAGGGCACTGATACGTTGGGGAATGAAGAAGCGAAGAATAAGATTGACATCTCGGAAGATTGGGTGAATAAGCTAAAGGAGAAGAAGGGACTGCAAAAGGCTGAGCTGGACGCTGCAAAGGTGGAAACAGAGAAGCTGTGCAGATATGTTGTTGAGCTCGACAGGGTGGCTGTGGACCTGGCCAAAGCTCAAGCTGCTGCCATCAAAGCTGAGAAGGACGAGGTTGAAGAGCAAACTGAAGAAATGAAGAACAAGATTGACATCTTGAAAACCATGGTGGAAAAACTAAAGGACAAGAAGATACTGCAAAAGTCTGAGGCTGAAGCTGCAATGGTGGCTTGTGAGAAGCTATGCAGAGATGTAGAGCTTAGCAGGGTGGCTGTGGACATGGCCAAAGCTGAAACTTCTACCCTCAAAGCTGAGAAGGACAAGCTTGAAGAGCAAAATGAAATCGAGATGAGGAAAAAGAGGAAATATATTGCTGCTCTGATCTCTGAGCTGAAAAGTTGCTACTCCTTCCGGACAGATCCGAAGATGAGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

386

Amino Acids

44.19

Weight (kDa)

5.76

Isoelectric Point (pI)

48.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018201)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0284051
rosa_laevigata RLG00000012774 RLG00000012777
rosa_roxburghii Rroxscaffold_7G00184980
rosa_rugosa Rorug06G0159900 Rorug06G0159900 Rorug06G0160000
rosa_samantha Rh6BG273600 Rh6CG275100 Rh6DG268000
rosa_wichuraiana Rw6G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 491
AccB7I CCANNNNNTGG 3 cut(s) 74, 571, 607
AccIII TCCGGA 1 cut(s) 1134
AclWI GGATC 2 cut(s) 432, 1136
AcoI YGGCCR 2 cut(s) 795, 1005
AcuI CTGAAG 4 cut(s) 434, 528, 873, 957
AfaI GTAC 1 cut(s) 198
AfiI CCNNNNNNNGG 4 cut(s) 74, 531, 571, 607
AflII CTTAAG 1 cut(s) 10
AgsI TTSAA 6 cut(s) 139, 289, 499, 842, 883, 1052
AjnI CCWGG 3 cut(s) 73, 546, 792
Alw21I GWGCWC 2 cut(s) 774, 1157
Alw26I GTCTC 2 cut(s) 173, 548
AlwI GGATC 2 cut(s) 432, 1136
Aor13HI TCCGGA 1 cut(s) 1134
AoxI GGCC 2 cut(s) 795, 1005
ApeKI GCWGC 5 cut(s) 728, 809, 812, 941, 1097
AspS9I GGNCC 1 cut(s) 790
AsuHPI GGTGA 4 cut(s) 16, 264, 605, 691
AvaII GGWCC 1 cut(s) 790
AxyI CCTNAGG 1 cut(s) 276
BaeGI GKGCMC 1 cut(s) 623
BalI TGGCCA 2 cut(s) 797, 1007
BanII GRGCYC 2 cut(s) 774, 1157
BauI CACGAG 1 cut(s) 529
BbsI GAAGAC 3 cut(s) 22, 516, 603
Bbv12I GWGCWC 2 cut(s) 774, 1157
BbvI GCAGC 5 cut(s) 715, 796, 799, 928, 1084
BccI CCATC 2 cut(s) 300, 824
BciT130I CCWGG 3 cut(s) 75, 548, 794
BclI TGATCA 1 cut(s) 474
BcoDI GTCTC 2 cut(s) 173, 548
BfaI CTAG 2 cut(s) 389, 587
BfrI CTTAAG 1 cut(s) 10
BfuAI ACCTGC 1 cut(s) 491
BisI GCNGC 5 cut(s) 729, 810, 813, 942, 1098
BlpI GCTNAGC 3 cut(s) 164, 717, 983
BlsI GCNGC 5 cut(s) 730, 811, 814, 943, 1099
BmcAI AGTACT 1 cut(s) 198
Bme1390I CCNGG 3 cut(s) 75, 548, 794
Bme18I GGWCC 1 cut(s) 790
BmgT120I GGNCC 1 cut(s) 790
BmrFI CCNGG 3 cut(s) 75, 548, 794
BmsI GCATC 1 cut(s) 133
BpiI GAAGAC 3 cut(s) 22, 516, 603
Bpu1102I GCTNAGC 3 cut(s) 164, 717, 983
BpuEI CTTGAG 3 cut(s) 13, 389, 789
BsaBI GATNNNNATC 2 cut(s) 662, 875
BsaI GGTCTC 1 cut(s) 173
BsaJI CCNNGG 2 cut(s) 74, 888
BsaWI WCCGGW 1 cut(s) 1134
Bsc4I CCNNNNNNNGG 4 cut(s) 74, 531, 571, 607
Bse1I ACTGG 2 cut(s) 426, 565
Bse21I CCTNAGG 1 cut(s) 276
Bse3DI GCAATG 1 cut(s) 951
Bse8I GATNNNNATC 2 cut(s) 662, 875
BseAI TCCGGA 1 cut(s) 1134
BseBI CCWGG 3 cut(s) 75, 548, 794
BseDI CCNNGG 2 cut(s) 74, 888
BseGI GGATG 2 cut(s) 124, 616
BseJI GATNNNNATC 2 cut(s) 662, 875
BseLI CCNNNNNNNGG 4 cut(s) 74, 531, 571, 607
BseMI GCAATG 1 cut(s) 951
BseMII CTCAG 7 cut(s) 155, 249, 708, 816, 921, 1026, 1101
BseNI ACTGG 2 cut(s) 426, 565
BseRI GAGGAG 1 cut(s) 173
BseSI GKGCMC 1 cut(s) 623
BseXI GCAGC 5 cut(s) 715, 796, 799, 928, 1084
BsgI GTGCAG 1 cut(s) 775
Bsh1285I CGRYCG 1 cut(s) 468
BshFI GGCC 2 cut(s) 797, 1007
BsiEI CGRYCG 1 cut(s) 468
BsiHKAI GWGCWC 2 cut(s) 774, 1157
BsiSI CCGG 1 cut(s) 1135
BslFI GGGAC 3 cut(s) 319, 406, 717
BslI CCNNNNNNNGG 4 cut(s) 74, 531, 571, 607
BsmAI GTCTC 2 cut(s) 173, 548
BsmFI GGGAC 3 cut(s) 319, 406, 717
BsnI GGCC 2 cut(s) 797, 1007
Bso31I GGTCTC 1 cut(s) 173
Bsp1286I GDGCHC 3 cut(s) 623, 774, 1157
Bsp13I TCCGGA 1 cut(s) 1134
Bsp143I GATC 4 cut(s) 424, 474, 1104, 1141
Bsp1720I GCTNAGC 3 cut(s) 164, 717, 983
Bsp19I CCATGG 1 cut(s) 888
BspANI GGCC 2 cut(s) 797, 1007
BspCNI CTCAG 7 cut(s) 156, 250, 709, 817, 922, 1027, 1102
BspEI TCCGGA 1 cut(s) 1134
BspMI ACCTGC 1 cut(s) 491
BspPI GGATC 2 cut(s) 432, 1136
BspQI GCTCTTC 2 cut(s) 837, 1047
BspTI CTTAAG 1 cut(s) 10
BspTNI GGTCTC 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 951
BsrI ACTGG 2 cut(s) 426, 565
BssECI CCNNGG 2 cut(s) 74, 888
BssMI GATC 4 cut(s) 424, 474, 1104, 1141
BssSI CACGAG 1 cut(s) 529
BssT1I CCWWGG 1 cut(s) 888
Bst2BI CACGAG 1 cut(s) 529
Bst2UI CCWGG 3 cut(s) 75, 548, 794
Bst4CI ACNGT 3 cut(s) 190, 206, 542
Bst6I CTCTTC 2 cut(s) 837, 1047
BstAFI CTTAAG 1 cut(s) 10
BstAPI GCANNNNNTGC 1 cut(s) 130
BstC8I GCNNGC 1 cut(s) 458
BstDEI CTNAG 9 cut(s) 164, 258, 276, 717, 825, 930, 983, 1035, 1110
BstDSI CCRYGG 1 cut(s) 888
BstEII GGTNACC 1 cut(s) 352
BstF5I GGATG 2 cut(s) 124, 616
BstKTI GATC 4 cut(s) 427, 477, 1107, 1144
BstMAI GTCTC 2 cut(s) 173, 548
BstMBI GATC 4 cut(s) 424, 474, 1104, 1141
BstMCI CGRYCG 1 cut(s) 468
BstMWI GCNNNNNNNGC 6 cut(s) 130, 809, 821, 941, 950, 1054
BstNI CCWGG 3 cut(s) 75, 548, 794
BstPI GGTNACC 1 cut(s) 352
BstSCI CCNGG 3 cut(s) 73, 546, 792
BstSLI GKGCMC 1 cut(s) 623
BstV1I GCAGC 5 cut(s) 715, 796, 799, 928, 1084
BstV2I GAAGAC 3 cut(s) 22, 516, 603
BstX2I RGATCY 2 cut(s) 424, 1141
BstYI RGATCY 2 cut(s) 424, 1141
Bsu36I CCTNAGG 1 cut(s) 276
BsuRI GGCC 2 cut(s) 797, 1007
BtgI CCRYGG 1 cut(s) 888
BtsCI GGATG 2 cut(s) 124, 616
BtsIMutI CAGTG 3 cut(s) 81, 211, 621
BveI ACCTGC 1 cut(s) 491
Cac8I GCNNGC 1 cut(s) 458
Cfr13I GGNCC 1 cut(s) 790
CseI GACGC 2 cut(s) 290, 734
Csp6I GTAC 1 cut(s) 197
CviAII CATG 5 cut(s) 104, 130, 521, 889, 1003
CviQI GTAC 1 cut(s) 197
DdeI CTNAG 9 cut(s) 164, 258, 276, 717, 825, 930, 983, 1035, 1110
DpnI GATC 4 cut(s) 426, 476, 1106, 1143
DpnII GATC 4 cut(s) 424, 474, 1104, 1141
EaeI YGGCCR 2 cut(s) 795, 1005
Eam1104I CTCTTC 2 cut(s) 837, 1047
EarI CTCTTC 2 cut(s) 837, 1047
Ecl136II GAGCTC 2 cut(s) 772, 1155
Eco130I CCWWGG 1 cut(s) 888
Eco24I GRGCYC 2 cut(s) 774, 1157
Eco31I GGTCTC 1 cut(s) 173
Eco47I GGWCC 1 cut(s) 790
Eco53kI GAGCTC 2 cut(s) 772, 1155
Eco57I CTGAAG 4 cut(s) 434, 528, 873, 957
Eco81I CCTNAGG 1 cut(s) 276
Eco91I GGTNACC 1 cut(s) 352
EcoICRI GAGCTC 2 cut(s) 772, 1155
EcoO65I GGTNACC 1 cut(s) 352
EcoRII CCWGG 3 cut(s) 73, 546, 792
EcoT14I CCWWGG 1 cut(s) 888
EcoT38I GRGCYC 2 cut(s) 774, 1157
ErhI CCWWGG 1 cut(s) 888
FaeI CATG 5 cut(s) 107, 133, 524, 892, 1006
FalI AAGNNNNNCTT 4 cut(s) 269, 301, 351, 383
FaqI GGGAC 3 cut(s) 319, 406, 717
FatI CATG 5 cut(s) 103, 129, 520, 888, 1002
FbaI TGATCA 1 cut(s) 474
Fnu4HI GCNGC 5 cut(s) 729, 810, 813, 942, 1098
FokI GGATG 2 cut(s) 111, 623
FriOI GRGCYC 2 cut(s) 774, 1157
Fsp4HI GCNGC 5 cut(s) 729, 810, 813, 942, 1098
FspBI CTAG 2 cut(s) 389, 587
GluI GCNGC 5 cut(s) 729, 810, 813, 942, 1098
HaeIII GGCC 2 cut(s) 797, 1007
HapII CCGG 1 cut(s) 1135
HgaI GACGC 2 cut(s) 290, 734
Hin1II CATG 5 cut(s) 107, 133, 524, 892, 1006
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HindIII AAGCTT 1 cut(s) 1046
HinfI GANTC 1 cut(s) 269
HpaII CCGG 1 cut(s) 1135
HphI GGTGA 4 cut(s) 16, 264, 605, 691
Hpy166II GTNNAC 4 cut(s) 81, 283, 790, 1000
Hpy188I TCNGA 7 cut(s) 349, 403, 670, 931, 1104, 1111, 1146
Hpy188III TCNNGA 5 cut(s) 478, 880, 1069, 1135, 1158
Hpy8I GTNNAC 4 cut(s) 81, 283, 790, 1000
Hpy99I CGWCG 1 cut(s) 306
HpyAV CCTTC 9 cut(s) 334, 409, 436, 535, 584, 694, 823, 1033, 1141
HpyCH4III ACNGT 3 cut(s) 190, 206, 542
HpyCH4IV ACGT 1 cut(s) 629
HpyCH4V TGCA 8 cut(s) 107, 124, 709, 731, 756, 922, 944, 969
HpyF10VI GCNNNNNNNGC 6 cut(s) 130, 809, 821, 941, 950, 1054
HpyF3I CTNAG 9 cut(s) 164, 258, 276, 717, 825, 930, 983, 1035, 1110
HpySE526I ACGT 1 cut(s) 629
Hsp92II CATG 5 cut(s) 107, 133, 524, 892, 1006
Kpn2I TCCGGA 1 cut(s) 1134
Ksp22I TGATCA 1 cut(s) 474
Kzo9I GATC 4 cut(s) 424, 474, 1104, 1141
LguI GCTCTTC 2 cut(s) 837, 1047
LmnI GCTCC 3 cut(s) 70, 160, 435
Lsp1109I GCAGC 5 cut(s) 715, 796, 799, 928, 1084
LweI GCATC 1 cut(s) 133
MaeI CTAG 2 cut(s) 389, 587
MaeII ACGT 1 cut(s) 629
MaeIII GTNAC 1 cut(s) 352
MalI GATC 4 cut(s) 426, 476, 1106, 1143
MboI GATC 4 cut(s) 424, 474, 1104, 1141
MflI RGATCY 2 cut(s) 424, 1141
MhlI GDGCHC 3 cut(s) 623, 774, 1157
MlsI TGGCCA 2 cut(s) 797, 1007
MluCI AATT 1 cut(s) 93
MluNI TGGCCA 2 cut(s) 797, 1007
Mox20I TGGCCA 2 cut(s) 797, 1007
MroI TCCGGA 1 cut(s) 1134
MscI TGGCCA 2 cut(s) 797, 1007
MseI TTAA 1 cut(s) 11
Msp20I TGGCCA 2 cut(s) 797, 1007
MspCI CTTAAG 1 cut(s) 10
MspI CCGG 1 cut(s) 1135
MspR9I CCNGG 3 cut(s) 75, 548, 794
MvaI CCWGG 3 cut(s) 75, 548, 794
MwoI GCNNNNNNNGC 6 cut(s) 130, 809, 821, 941, 950, 1054
NcoI CCATGG 1 cut(s) 888
NdeII GATC 4 cut(s) 424, 474, 1104, 1141
NlaIII CATG 5 cut(s) 107, 133, 524, 892, 1006
PciSI GCTCTTC 2 cut(s) 837, 1047
PfeI GAWTC 1 cut(s) 269
PflMI CCANNNNNTGG 3 cut(s) 74, 571, 607
PfoI TCCNGGA 1 cut(s) 546
PkrI GCNGC 5 cut(s) 730, 811, 814, 943, 1099
Psp124BI GAGCTC 2 cut(s) 774, 1157
Psp6I CCWGG 3 cut(s) 73, 546, 792
PspEI GGTNACC 1 cut(s) 352
PspGI CCWGG 3 cut(s) 73, 546, 792
PspPI GGNCC 1 cut(s) 790
PsuI RGATCY 2 cut(s) 424, 1141
RsaI GTAC 1 cut(s) 198
RsaNI GTAC 1 cut(s) 197
SacI GAGCTC 2 cut(s) 774, 1157
SapI GCTCTTC 2 cut(s) 837, 1047
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 5 cut(s) 729, 810, 813, 942, 1098
Sau3AI GATC 4 cut(s) 424, 474, 1104, 1141
Sau96I GGNCC 1 cut(s) 790
ScaI AGTACT 1 cut(s) 198
ScrFI CCNGG 3 cut(s) 75, 548, 794
SduI GDGCHC 3 cut(s) 623, 774, 1157
SfaNI GCATC 1 cut(s) 133
SinI GGWCC 1 cut(s) 790
SmlI CTYRAG 4 cut(s) 10, 28, 368, 804
SmoI CTYRAG 4 cut(s) 10, 28, 368, 804
Sse9I AATT 1 cut(s) 93
SspMI CTAG 2 cut(s) 389, 587
SstI GAGCTC 2 cut(s) 774, 1157
StyD4I CCNGG 3 cut(s) 73, 546, 792
StyI CCWWGG 1 cut(s) 888
TaaI ACNGT 3 cut(s) 190, 206, 542
TaiI ACGT 1 cut(s) 632
TaqI TCGA 4 cut(s) 267, 304, 774, 1068
TaqII GACCGA 1 cut(s) 482
TasI AATT 1 cut(s) 93
TatI WGTACW 1 cut(s) 196
TfiI GAWTC 1 cut(s) 269
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TscAI CASTG 3 cut(s) 88, 211, 628
TseI GCWGC 5 cut(s) 728, 809, 812, 941, 1097
TspDTI ATGAA 7 cut(s) 159, 165, 257, 378, 654, 875, 1077
TspRI CASTG 3 cut(s) 88, 211, 628
Van91I CCANNNNNTGG 3 cut(s) 74, 571, 607
Vha464I CTTAAG 1 cut(s) 10
VpaK11BI GGWCC 1 cut(s) 790
XspI CTAG 2 cut(s) 389, 587
ZrmI AGTACT 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.