Rw6G023500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0018201
Physical Location & Seq
Forward (+)
46104310 .. 46108440
4131 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G023500.1

Sequence Viewer

Length: 1299 bp
ATGGAAGAAAATTTCATCTCAACTAAAAAAGATGATAAGACAATTGGAGTTGGAGTGAGGGCTGCTTCTAACCTCTCTTCTATTTATAAAATTTCACATTTTAGTAGGGAGCAAAGCAGCGTAAACCGGGAAAACATTGTGCTACTATGTTCAGCTCTGGAGTGTTGCACCCTAGATAATAAGACTGGAAGTAGTTATGTTCCAGCTCCACTTCCTGGGTTCACTGACAGCGAAATTGACACTCATGCAAAACTTGATTGTGTGCATCCCATGCCTTTGAACGATGAAGATGAACCAGAGGAGCTGAGCTTACCCAAAGAGACCAAGACAGTTTCAGTACTAAACAGTGCCAAGAGGAAAATGAGGAAGATTGATGAGTTGATGAAGATTACTGAAACTGAGGTCATCGAATCACCTAAGGTTGACTTGAAAAAACCCATGCGTCGATGGAAGAAAGTGCTGGAAAAGAAGAAGTCCCCGAAGGTGTCAGAGGTCACCAAAGATGAACTTGAGAAGATAGTGAAGAAACTAGGGACAAACTCTGACTTCTACCTAGAGGAACTGGATCTGCTCCACAAGAAGGAAAATGAGAGCAAGCTAACAACCGAGCTGATCAAGACCTGCCAAAAAGAGTTGAAAGAGGCTGAAGACAATAATCATGCCTTCTCGTGGGATTACTGTCTCCTGGATAAGTCCTATGTCCAGTCTTTGGAAAATATATGGCTAGAAGGTGAAGACCAGAATGTGGATGACGAGGGCACTGATACATTGGGGAATGAAGAAGCGAAGAATAAGATTGACATCTCGGAAGATTGGGTGAATAAGCTAAAGGAGAAGAAGGGACTGCAAAAGGCTGAGCTGGACGCTGCAAAGGTGGAAACAGAGAAGCTGCGCAGATATGTTGTTGAGCTCGACAGGGTGGCTGTGGACATGGCCAAAGCTCAAGCTGTTGCCATCAAAGCTGAGAAGGACGAGGTTGAAGAGCAAACTGAAGAAATGAAGAACAAGATTGACATCATGAAAACCATGGTGGAAAAACTAAAGGACAAGAAGATACTGCAAAAGTCTGAGGCTGAAGCTGCAATGGTGGCTTGTGAGAAGCTATGCAGAGATGTAGAGCTTAGCAGGGTGGCTGTGGACATGGCCAAAGCTGAAACTTCTACCCTCAAAGCTGAGAAGGACAAGCTTGAAGAGCAAAATGAAATCGAGGTGAGGAAAAAGAGGAAATATAATGCTGCTCTGATCTCTGAGCTGAAAAGTTGCTACTCCTTCCGGACAGATCCGAAGTTGAGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

432

Amino Acids

49.33

Weight (kDa)

5.35

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018201)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0284051
rosa_laevigata RLG00000012774 RLG00000012777
rosa_roxburghii Rroxscaffold_7G00184980
rosa_rugosa Rorug06G0159900 Rorug06G0159900 Rorug06G0160000
rosa_samantha Rh6BG273600 Rh6CG275100 Rh6DG268000
rosa_wichuraiana Rw6G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 87
Acc16I TGCGCA 1 cut(s) 893
Acc36I ACCTGC 1 cut(s) 629
AccB7I CCANNNNNTGG 3 cut(s) 215, 709, 745
AccIII TCCGGA 1 cut(s) 1272
AclWI GGATC 2 cut(s) 573, 1274
AcoI YGGCCR 2 cut(s) 933, 1143
AcsI RAATTY 2 cut(s) 10, 90
AcuI CTGAAG 3 cut(s) 666, 1011, 1095
AfaI GTAC 1 cut(s) 339
AfiI CCNNNNNNNGG 5 cut(s) 215, 580, 669, 709, 745
AgsI TTSAA 5 cut(s) 280, 430, 637, 980, 1190
AjnI CCWGG 2 cut(s) 214, 684
Alw21I GWGCWC 2 cut(s) 912, 1295
Alw26I GTCTC 2 cut(s) 314, 686
AlwI GGATC 2 cut(s) 573, 1274
Aor13HI TCCGGA 1 cut(s) 1272
AoxI GGCC 2 cut(s) 933, 1143
ApeKI GCWGC 6 cut(s) 62, 117, 866, 889, 1079, 1235
ApoI RAATTY 2 cut(s) 10, 90
AspLEI GCGC 1 cut(s) 894
AsuC2I CCSGG 1 cut(s) 128
AsuHPI GGTGA 5 cut(s) 405, 487, 743, 829, 1222
AxyI CCTNAGG 1 cut(s) 417
BaeGI GKGCMC 1 cut(s) 761
BalI TGGCCA 2 cut(s) 935, 1145
BanII GRGCYC 2 cut(s) 912, 1295
BauI CACGAG 1 cut(s) 667
BbsI GAAGAC 2 cut(s) 654, 741
Bbv12I GWGCWC 2 cut(s) 912, 1295
BbvI GCAGC 6 cut(s) 49, 129, 853, 876, 1066, 1222
BccI CCATC 2 cut(s) 441, 962
BciT130I CCWGG 2 cut(s) 216, 686
BclI TGATCA 1 cut(s) 612
BcnI CCSGG 1 cut(s) 128
BcoDI GTCTC 2 cut(s) 314, 686
BfaI CTAG 4 cut(s) 173, 530, 554, 725
BfuAI ACCTGC 1 cut(s) 629
BisI GCNGC 6 cut(s) 63, 118, 867, 890, 1080, 1236
BlpI GCTNAGC 3 cut(s) 305, 855, 1121
BlsI GCNGC 6 cut(s) 64, 119, 868, 891, 1081, 1237
BmcAI AGTACT 1 cut(s) 339
Bme1390I CCNGG 3 cut(s) 128, 216, 686
BmrFI CCNGG 3 cut(s) 128, 216, 686
BmsI GCATC 1 cut(s) 274
BpiI GAAGAC 2 cut(s) 654, 741
BpmI CTGGAG 1 cut(s) 179
Bpu1102I GCTNAGC 3 cut(s) 305, 855, 1121
BpuEI CTTGAG 2 cut(s) 530, 927
BpuMI CCSGG 1 cut(s) 128
BsaBI GATNNNNATC 2 cut(s) 800, 1013
BsaI GGTCTC 1 cut(s) 314
BsaJI CCNNGG 2 cut(s) 215, 1026
BsaWI WCCGGW 1 cut(s) 1272
BsaXI ACNNNNNCTCC 2 cut(s) 39, 69
Bsc4I CCNNNNNNNGG 5 cut(s) 215, 580, 669, 709, 745
Bse1I ACTGG 3 cut(s) 190, 567, 703
Bse21I CCTNAGG 1 cut(s) 417
Bse3DI GCAATG 1 cut(s) 1089
Bse8I GATNNNNATC 2 cut(s) 800, 1013
BseAI TCCGGA 1 cut(s) 1272
BseBI CCWGG 2 cut(s) 216, 686
BseDI CCNNGG 2 cut(s) 215, 1026
BseGI GGATG 2 cut(s) 265, 754
BseJI GATNNNNATC 2 cut(s) 800, 1013
BseLI CCNNNNNNNGG 5 cut(s) 215, 580, 669, 709, 745
BseMI GCAATG 1 cut(s) 1089
BseMII CTCAG 7 cut(s) 296, 390, 846, 954, 1059, 1164, 1239
BseNI ACTGG 3 cut(s) 190, 567, 703
BseRI GAGGAG 1 cut(s) 314
BseSI GKGCMC 1 cut(s) 761
BseXI GCAGC 6 cut(s) 49, 129, 853, 876, 1066, 1222
BshFI GGCC 2 cut(s) 935, 1145
BsiHKAI GWGCWC 2 cut(s) 912, 1295
BsiSI CCGG 2 cut(s) 127, 1273
BslFI GGGAC 3 cut(s) 460, 547, 855
BslI CCNNNNNNNGG 5 cut(s) 215, 580, 669, 709, 745
BsmAI GTCTC 2 cut(s) 314, 686
BsmFI GGGAC 3 cut(s) 460, 547, 855
BsnI GGCC 2 cut(s) 935, 1145
Bso31I GGTCTC 1 cut(s) 314
Bsp1286I GDGCHC 3 cut(s) 761, 912, 1295
Bsp13I TCCGGA 1 cut(s) 1272
Bsp143I GATC 4 cut(s) 565, 612, 1242, 1279
Bsp1720I GCTNAGC 3 cut(s) 305, 855, 1121
Bsp19I CCATGG 1 cut(s) 1026
BspANI GGCC 2 cut(s) 935, 1145
BspCNI CTCAG 7 cut(s) 297, 391, 847, 955, 1060, 1165, 1240
BspEI TCCGGA 1 cut(s) 1272
BspHI TCATGA 1 cut(s) 1017
BspMI ACCTGC 1 cut(s) 629
BspPI GGATC 2 cut(s) 573, 1274
BspQI GCTCTTC 2 cut(s) 975, 1185
BspTNI GGTCTC 1 cut(s) 314
BsrDI GCAATG 1 cut(s) 1089
BsrI ACTGG 3 cut(s) 190, 567, 703
BssECI CCNNGG 2 cut(s) 215, 1026
BssMI GATC 4 cut(s) 565, 612, 1242, 1279
BssSI CACGAG 1 cut(s) 667
BssT1I CCWWGG 1 cut(s) 1026
Bst2BI CACGAG 1 cut(s) 667
Bst2UI CCWGG 2 cut(s) 216, 686
Bst4CI ACNGT 3 cut(s) 331, 347, 680
Bst6I CTCTTC 3 cut(s) 82, 975, 1185
BstAPI GCANNNNNTGC 1 cut(s) 271
BstC8I GCNNGC 1 cut(s) 596
BstDEI CTNAG 9 cut(s) 305, 399, 417, 855, 963, 1068, 1121, 1173, 1248
BstDSI CCRYGG 1 cut(s) 1026
BstEII GGTNACC 1 cut(s) 493
BstF5I GGATG 2 cut(s) 265, 754
BstHHI GCGC 1 cut(s) 894
BstKTI GATC 4 cut(s) 568, 615, 1245, 1282
BstMAI GTCTC 2 cut(s) 314, 686
BstMBI GATC 4 cut(s) 565, 612, 1242, 1279
BstMWI GCNNNNNNNGC 5 cut(s) 271, 959, 1079, 1088, 1192
BstNI CCWGG 2 cut(s) 216, 686
BstPI GGTNACC 1 cut(s) 493
BstSCI CCNGG 3 cut(s) 126, 214, 684
BstSLI GKGCMC 1 cut(s) 761
BstV1I GCAGC 6 cut(s) 49, 129, 853, 876, 1066, 1222
BstV2I GAAGAC 2 cut(s) 654, 741
BstX2I RGATCY 2 cut(s) 565, 1279
BstYI RGATCY 2 cut(s) 565, 1279
Bsu36I CCTNAGG 1 cut(s) 417
BsuRI GGCC 2 cut(s) 935, 1145
BtgI CCRYGG 1 cut(s) 1026
BtsCI GGATG 2 cut(s) 265, 754
BtsIMutI CAGTG 3 cut(s) 222, 352, 759
BveI ACCTGC 1 cut(s) 629
Cac8I GCNNGC 1 cut(s) 596
CciI TCATGA 1 cut(s) 1017
CfoI GCGC 1 cut(s) 894
CseI GACGC 2 cut(s) 431, 872
Csp6I GTAC 1 cut(s) 338
CviAII CATG 8 cut(s) 245, 271, 439, 659, 931, 1018, 1027, 1141
CviQI GTAC 1 cut(s) 338
DdeI CTNAG 9 cut(s) 305, 399, 417, 855, 963, 1068, 1121, 1173, 1248
DpnI GATC 4 cut(s) 567, 614, 1244, 1281
DpnII GATC 4 cut(s) 565, 612, 1242, 1279
EaeI YGGCCR 2 cut(s) 933, 1143
Eam1104I CTCTTC 3 cut(s) 82, 975, 1185
EarI CTCTTC 3 cut(s) 82, 975, 1185
Ecl136II GAGCTC 2 cut(s) 910, 1293
Eco130I CCWWGG 1 cut(s) 1026
Eco24I GRGCYC 2 cut(s) 912, 1295
Eco31I GGTCTC 1 cut(s) 314
Eco53kI GAGCTC 2 cut(s) 910, 1293
Eco57I CTGAAG 3 cut(s) 666, 1011, 1095
Eco81I CCTNAGG 1 cut(s) 417
Eco91I GGTNACC 1 cut(s) 493
EcoICRI GAGCTC 2 cut(s) 910, 1293
EcoO65I GGTNACC 1 cut(s) 493
EcoRII CCWGG 2 cut(s) 214, 684
EcoT14I CCWWGG 1 cut(s) 1026
EcoT38I GRGCYC 2 cut(s) 912, 1295
ErhI CCWWGG 1 cut(s) 1026
FaeI CATG 8 cut(s) 248, 274, 442, 662, 934, 1021, 1030, 1144
FalI AAGNNNNNCTT 4 cut(s) 410, 442, 492, 524
FaqI GGGAC 3 cut(s) 460, 547, 855
FatI CATG 8 cut(s) 244, 270, 438, 658, 930, 1017, 1026, 1140
FbaI TGATCA 1 cut(s) 612
Fnu4HI GCNGC 6 cut(s) 63, 118, 867, 890, 1080, 1236
FokI GGATG 2 cut(s) 252, 761
FriOI GRGCYC 2 cut(s) 912, 1295
Fsp4HI GCNGC 6 cut(s) 63, 118, 867, 890, 1080, 1236
FspBI CTAG 4 cut(s) 173, 530, 554, 725
FspI TGCGCA 1 cut(s) 893
GlaI GCGC 1 cut(s) 893
GluI GCNGC 6 cut(s) 63, 118, 867, 890, 1080, 1236
GsuI CTGGAG 1 cut(s) 179
HaeIII GGCC 2 cut(s) 935, 1145
HapII CCGG 2 cut(s) 127, 1273
HgaI GACGC 2 cut(s) 431, 872
HhaI GCGC 1 cut(s) 894
Hin1II CATG 8 cut(s) 248, 274, 442, 662, 934, 1021, 1030, 1144
Hin6I GCGC 1 cut(s) 892
HinP1I GCGC 1 cut(s) 892
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HindIII AAGCTT 1 cut(s) 1184
HinfI GANTC 1 cut(s) 410
HpaII CCGG 2 cut(s) 127, 1273
HphI GGTGA 5 cut(s) 405, 487, 743, 829, 1222
Hpy166II GTNNAC 5 cut(s) 124, 222, 424, 928, 1138
Hpy188I TCNGA 7 cut(s) 490, 544, 808, 1069, 1242, 1249, 1284
Hpy188III TCNNGA 5 cut(s) 158, 616, 1018, 1273, 1296
Hpy8I GTNNAC 5 cut(s) 124, 222, 424, 928, 1138
Hpy99I CGWCG 1 cut(s) 447
HpyAV CCTTC 8 cut(s) 475, 574, 673, 722, 832, 961, 1171, 1279
HpyCH4III ACNGT 3 cut(s) 331, 347, 680
HpyCH4V TGCA 8 cut(s) 168, 248, 265, 847, 869, 1060, 1082, 1107
HpyF10VI GCNNNNNNNGC 5 cut(s) 271, 959, 1079, 1088, 1192
HpyF3I CTNAG 9 cut(s) 305, 399, 417, 855, 963, 1068, 1121, 1173, 1248
Hsp92II CATG 8 cut(s) 248, 274, 442, 662, 934, 1021, 1030, 1144
HspAI GCGC 1 cut(s) 892
Kpn2I TCCGGA 1 cut(s) 1272
Ksp22I TGATCA 1 cut(s) 612
Kzo9I GATC 4 cut(s) 565, 612, 1242, 1279
LguI GCTCTTC 2 cut(s) 975, 1185
LmnI GCTCC 4 cut(s) 109, 211, 301, 576
Lsp1109I GCAGC 6 cut(s) 49, 129, 853, 876, 1066, 1222
LweI GCATC 1 cut(s) 274
MaeI CTAG 4 cut(s) 173, 530, 554, 725
MaeIII GTNAC 1 cut(s) 493
MalI GATC 4 cut(s) 567, 614, 1244, 1281
MboI GATC 4 cut(s) 565, 612, 1242, 1279
MfeI CAATTG 1 cut(s) 42
MflI RGATCY 2 cut(s) 565, 1279
MhlI GDGCHC 3 cut(s) 761, 912, 1295
MlsI TGGCCA 2 cut(s) 935, 1145
MluCI AATT 4 cut(s) 10, 42, 90, 234
MluNI TGGCCA 2 cut(s) 935, 1145
MmeI TCCRAC 1 cut(s) 31
Mox20I TGGCCA 2 cut(s) 935, 1145
MroI TCCGGA 1 cut(s) 1272
MscI TGGCCA 2 cut(s) 935, 1145
Msp20I TGGCCA 2 cut(s) 935, 1145
MspI CCGG 2 cut(s) 127, 1273
MspR9I CCNGG 3 cut(s) 128, 216, 686
MunI CAATTG 1 cut(s) 42
MvaI CCWGG 2 cut(s) 216, 686
MwoI GCNNNNNNNGC 5 cut(s) 271, 959, 1079, 1088, 1192
NciI CCSGG 1 cut(s) 128
NcoI CCATGG 1 cut(s) 1026
NdeII GATC 4 cut(s) 565, 612, 1242, 1279
NlaIII CATG 8 cut(s) 248, 274, 442, 662, 934, 1021, 1030, 1144
NmuCI GTSAC 1 cut(s) 493
NsbI TGCGCA 1 cut(s) 893
PagI TCATGA 1 cut(s) 1017
PciSI GCTCTTC 2 cut(s) 975, 1185
PfeI GAWTC 1 cut(s) 410
PflMI CCANNNNNTGG 3 cut(s) 215, 709, 745
PfoI TCCNGGA 1 cut(s) 684
PkrI GCNGC 6 cut(s) 64, 119, 868, 891, 1081, 1237
PsiI TTATAA 1 cut(s) 87
Psp124BI GAGCTC 2 cut(s) 912, 1295
Psp6I CCWGG 2 cut(s) 214, 684
PspEI GGTNACC 1 cut(s) 493
PspGI CCWGG 2 cut(s) 214, 684
PsuI RGATCY 2 cut(s) 565, 1279
RsaI GTAC 1 cut(s) 339
RsaNI GTAC 1 cut(s) 338
SacI GAGCTC 2 cut(s) 912, 1295
SapI GCTCTTC 2 cut(s) 975, 1185
SatI GCNGC 6 cut(s) 63, 118, 867, 890, 1080, 1236
Sau3AI GATC 4 cut(s) 565, 612, 1242, 1279
ScaI AGTACT 1 cut(s) 339
ScrFI CCNGG 3 cut(s) 128, 216, 686
SduI GDGCHC 3 cut(s) 761, 912, 1295
SfaNI GCATC 1 cut(s) 274
SmlI CTYRAG 2 cut(s) 509, 942
SmoI CTYRAG 2 cut(s) 509, 942
Sse9I AATT 4 cut(s) 10, 42, 90, 234
SspMI CTAG 4 cut(s) 173, 530, 554, 725
SstI GAGCTC 2 cut(s) 912, 1295
StyD4I CCNGG 3 cut(s) 126, 214, 684
StyI CCWWGG 1 cut(s) 1026
TaaI ACNGT 3 cut(s) 331, 347, 680
TaqI TCGA 4 cut(s) 408, 445, 912, 1206
TasI AATT 4 cut(s) 10, 42, 90, 234
TatI WGTACW 1 cut(s) 337
TfiI GAWTC 1 cut(s) 410
TscAI CASTG 3 cut(s) 229, 352, 766
TseFI GTSAC 1 cut(s) 493
TseI GCWGC 6 cut(s) 62, 117, 866, 889, 1079, 1235
Tsp45I GTSAC 1 cut(s) 493
TspDTI ATGAA 9 cut(s) 4, 300, 306, 398, 519, 792, 1013, 1034, 1215
TspRI CASTG 3 cut(s) 229, 352, 766
Van91I CCANNNNNTGG 3 cut(s) 215, 709, 745
XapI RAATTY 2 cut(s) 10, 90
XspI CTAG 4 cut(s) 173, 530, 554, 725
ZrmI AGTACT 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.