Rh6DG092800

Poly(A) RNA polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0021635
Physical Location & Seq
Forward (+)
11081346 .. 11083256
1911 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG092800.1

Sequence Viewer

Length: 531 bp
ATGGAGCCATTTGGATCATTTGTCTCAGAACTCTTTACTCGCTGGGGAGACTTGGATGTTTCAATTGAGTTCTCAAAAGGCGCATATATTTCTTCTTATGGAAGAAAGCACACACAAGATGTACTAAAAGATTTAATGAAGGCTATGAGAAAGAGAGGTGGATGGAACAGGTACCAGTTCATACCTAATGCAAGAGTTCCCATTCTGATGGTCAAAAGTAATCTTGGAAACATCTCCTGTGATATTTCAGTCAATAACCTGAAGGGCCAAATGAAATCAAAACTCTTTTTATGGATGAATGATATAGATCCACGCTTTCGTGATATGGTTTTACTGGTGAAGGAATGGGCAAAAGCACACAATATCAATAATTCAAAATCTGGGACTTTCAATTCATACTCTCTGAGTTTGCTCGTGATCTTCCATTTTCAGACATGTACACCTGCAATTCTGTCAATTCTGTCTCCTCTTCAAGACATATATACAGAAACTCTCACGGATGATCTTAAAGATATGGTACTGGACTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NTP_transf_2

Protein Analysis

176

Amino Acids

20.24

Weight (kDa)

8.85

Isoelectric Point (pI)

39.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MTPAP-like_central PF22600 2 - 96 2.1e-18 Poly(A) RNA polymerase, mitochondrial-like, central palm domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021635)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000585.1_g000009
rosa_roxburghii Rroxscaffold_4G00295580
rosa_samantha Rh6CG100600 Rh6DG092800 Rh7CG207300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 451
Acc36I ACCTGC 1 cut(s) 451
Acc65I GGTACC 1 cut(s) 171
AccB1I GGYRCC 1 cut(s) 171
AclWI GGATC 2 cut(s) 22, 302
AcuI CTGAAG 1 cut(s) 281
AfaI GTAC 4 cut(s) 123, 173, 439, 519
AflIII ACRYGT 1 cut(s) 434
AgsI TTSAA 4 cut(s) 63, 375, 391, 473
Alw26I GTCTC 3 cut(s) 28, 42, 468
AlwI GGATC 2 cut(s) 22, 302
AoxI GGCC 1 cut(s) 265
Asp718I GGTACC 1 cut(s) 171
AspLEI GCGC 1 cut(s) 83
AspS9I GGNCC 1 cut(s) 265
AsuHPI GGTGA 1 cut(s) 349
BanI GGYRCC 1 cut(s) 171
BauI CACGAG 1 cut(s) 413
BccI CCATC 2 cut(s) 156, 202
BcoDI GTCTC 3 cut(s) 28, 42, 468
BfaI CTAG 1 cut(s) 529
BfuAI ACCTGC 1 cut(s) 451
BmgT120I GGNCC 1 cut(s) 265
BmiI GGNNCC 2 cut(s) 6, 173
BsaBI GATNNNNATC 1 cut(s) 306
Bse1I ACTGG 3 cut(s) 175, 339, 525
Bse8I GATNNNNATC 1 cut(s) 306
BseGI GGATG 4 cut(s) 61, 167, 300, 505
BseJI GATNNNNATC 1 cut(s) 306
BseMII CTCAG 2 cut(s) 39, 395
BseNI ACTGG 3 cut(s) 175, 339, 525
BseRI GAGGAG 1 cut(s) 456
BseYI CCCAGC 1 cut(s) 42
BshFI GGCC 1 cut(s) 267
BshNI GGYRCC 1 cut(s) 171
BslFI GGGAC 1 cut(s) 397
BsmAI GTCTC 3 cut(s) 28, 42, 468
BsmFI GGGAC 1 cut(s) 397
BsnI GGCC 1 cut(s) 267
Bsp1407I TGTACA 1 cut(s) 437
Bsp143I GATC 4 cut(s) 14, 307, 417, 502
BspANI GGCC 1 cut(s) 267
BspCNI CTCAG 2 cut(s) 38, 396
BspLI GGNNCC 2 cut(s) 6, 173
BspMI ACCTGC 1 cut(s) 451
BspPI GGATC 2 cut(s) 22, 302
BspT107I GGYRCC 1 cut(s) 171
BsrGI TGTACA 1 cut(s) 437
BsrI ACTGG 3 cut(s) 175, 339, 525
BssMI GATC 4 cut(s) 14, 307, 417, 502
BssSI CACGAG 1 cut(s) 413
Bst2BI CACGAG 1 cut(s) 413
Bst6I CTCTTC 1 cut(s) 474
BstAUI TGTACA 1 cut(s) 437
BstDEI CTNAG 2 cut(s) 25, 404
BstF5I GGATG 4 cut(s) 61, 167, 300, 505
BstHHI GCGC 1 cut(s) 83
BstKTI GATC 4 cut(s) 17, 310, 420, 505
BstMAI GTCTC 3 cut(s) 28, 42, 468
BstMBI GATC 4 cut(s) 14, 307, 417, 502
BstNSI RCATGY 1 cut(s) 438
BstX2I RGATCY 1 cut(s) 307
BstXI CCANNNNNNTGG 1 cut(s) 208
BstYI RGATCY 1 cut(s) 307
BsuRI GGCC 1 cut(s) 267
BtsCI GGATG 4 cut(s) 61, 167, 300, 505
BveI ACCTGC 1 cut(s) 451
CfoI GCGC 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 265
Csp6I GTAC 4 cut(s) 122, 172, 438, 518
CviAII CATG 1 cut(s) 435
CviJI RGCY 3 cut(s) 7, 143, 267
CviKI_1 RGCY 3 cut(s) 7, 143, 267
CviQI GTAC 4 cut(s) 122, 172, 438, 518
DdeI CTNAG 2 cut(s) 25, 404
DpnI GATC 4 cut(s) 16, 309, 419, 504
DpnII GATC 4 cut(s) 14, 307, 417, 502
Eam1104I CTCTTC 1 cut(s) 474
EarI CTCTTC 1 cut(s) 474
Eco57I CTGAAG 1 cut(s) 281
FaeI CATG 1 cut(s) 438
FaqI GGGAC 1 cut(s) 397
FatI CATG 1 cut(s) 434
FokI GGATG 4 cut(s) 68, 174, 307, 512
FspBI CTAG 1 cut(s) 529
GlaI GCGC 1 cut(s) 82
GsaI CCCAGC 1 cut(s) 46
HaeIII GGCC 1 cut(s) 267
HhaI GCGC 1 cut(s) 83
Hin1II CATG 1 cut(s) 438
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HphI GGTGA 1 cut(s) 349
Hpy166II GTNNAC 1 cut(s) 440
Hpy188I TCNGA 4 cut(s) 28, 207, 405, 432
Hpy188III TCNNGA 3 cut(s) 320, 415, 473
Hpy8I GTNNAC 1 cut(s) 440
HpyAV CCTTC 3 cut(s) 133, 256, 334
HpyCH4V TGCA 2 cut(s) 191, 446
HpyF3I CTNAG 2 cut(s) 25, 404
Hsp92II CATG 1 cut(s) 438
HspAI GCGC 1 cut(s) 81
KpnI GGTACC 1 cut(s) 175
Kzo9I GATC 4 cut(s) 14, 307, 417, 502
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 9 cut(s) 28, 154, 188, 250, 272, 320, 366, 456, 506
MaeI CTAG 1 cut(s) 529
MalI GATC 4 cut(s) 16, 309, 419, 504
MboI GATC 4 cut(s) 14, 307, 417, 502
MboII GAAGA 4 cut(s) 84, 114, 412, 461
MfeI CAATTG 1 cut(s) 63
MflI RGATCY 1 cut(s) 307
MluCI AATT 5 cut(s) 63, 370, 391, 447, 456
MnlI CCTC 2 cut(s) 149, 477
MseI TTAA 2 cut(s) 134, 507
MslI CAYNNNNRTG 1 cut(s) 206
MunI CAATTG 1 cut(s) 63
NdeII GATC 4 cut(s) 14, 307, 417, 502
NlaIII CATG 1 cut(s) 438
NlaIV GGNNCC 2 cut(s) 6, 173
NspI RCATGY 1 cut(s) 438
PaqCI CACCTGC 1 cut(s) 451
PciI ACATGT 1 cut(s) 434
PscI ACATGT 1 cut(s) 434
PspFI CCCAGC 1 cut(s) 42
PspN4I GGNNCC 2 cut(s) 6, 173
PspPI GGNCC 1 cut(s) 265
PsuI RGATCY 1 cut(s) 307
RsaI GTAC 4 cut(s) 123, 173, 439, 519
RsaNI GTAC 4 cut(s) 122, 172, 438, 518
RseI CAYNNNNRTG 1 cut(s) 206
SaqAI TTAA 2 cut(s) 134, 507
Sau3AI GATC 4 cut(s) 14, 307, 417, 502
Sau96I GGNCC 1 cut(s) 265
SetI ASST 5 cut(s) 160, 173, 187, 261, 445
SmiMI CAYNNNNRTG 1 cut(s) 206
Sse9I AATT 5 cut(s) 63, 370, 391, 447, 456
SspMI CTAG 1 cut(s) 529
TasI AATT 5 cut(s) 63, 370, 391, 447, 456
TatI WGTACW 2 cut(s) 121, 437
Tru1I TTAA 2 cut(s) 134, 507
Tru9I TTAA 2 cut(s) 134, 507
TspDTI ATGAA 5 cut(s) 152, 169, 287, 311, 384
TspGWI ACGGA 1 cut(s) 512
XceI RCATGY 1 cut(s) 438
XspI CTAG 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.