Rh7CG207300

Poly(A) RNA polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0021635
Physical Location & Seq
Reverse (-)
18531932 .. 18554006
22075 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG207300.1

Sequence Viewer

Length: 816 bp
ATGACCTGGACCCCACAACCGACCCTAGACAATACGGACAGCGACGCCTCTCCTCTCATCGGCTCGGCTCAGGCCGGTCGATCGAGCCAGAAGGACTCTAATGTCTCTGGCGACGATGCCTTTGCTCGCCTCTACTCTGCCGTCGAGTTCGACATTGAAGCTGCTCTTCAGAAAGCGGAGCTTGCTTCAAAAGAGAAAAGTAGGGCATTTGCAGTTGCTCTGAATGCCGTGATTCGCCGGACCAAGGCTCGATTGCTTAAAGAGGTTCCCAAGTTGCAGAGATTGGCTGTAAAGAAGATTCATAGAAGAAAGTTACAAGGAGCTGTTGAGTCTGTAGAGAGCTTAAGAGGTGCAACTGTGGAGCCATTTGGATCATTTGTCTCAGAACTCTTTACTTGCTGGGGAGACTTGGATGTTTCAATTGAGTTGTCAAAAGGCGCATATATTTCTTCTTATGGAAGAAAGCACACACAAGATGTACTAAAAGATTTAATGAAGGCTATGAGAAAGAGAGGTGGATGGAACATGTATCAGTTCATACCTAATGCAAGAGTTCCCATTCTGATGGTCAAAAGTAATCTTGGAAACATCTCCTGTGATATTTCAGTCAATAACCTGAAAGGCCAAATGAAATCAAAACTCTTTTTATGGATGAATGATATAGATCCACGCTTTCGTGATATGGTTTTACTGGAATGGGCAAAAGCACACAATATCAATAATTCAAAATCTGGGACTTTCAATTCATACTCTCTGAGTTTGCTCGTGATCTTCCATTTTCAGACATGTACACCTGCAATTCTACCTCCTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NTP_transf_2

Protein Analysis

271

Amino Acids

30.24

Weight (kDa)

9.61

Isoelectric Point (pI)

43.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MTPAP-like_central PF22600 94 - 215 1e-19 Poly(A) RNA polymerase, mitochondrial-like, central palm domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021635)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000585.1_g000009
rosa_roxburghii Rroxscaffold_4G00295580
rosa_samantha Rh6CG100600 Rh6DG092800 Rh7CG207300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 802
AasI GACNNNNNNGTC 1 cut(s) 101
Acc36I ACCTGC 1 cut(s) 802
AciI CCGC 1 cut(s) 176
AclWI GGATC 2 cut(s) 379, 659
AcuI CTGAAG 1 cut(s) 152
AcyI GRCGYC 1 cut(s) 45
AfaI GTAC 2 cut(s) 480, 790
AfiI CCNNNNNNNGG 2 cut(s) 59, 244
AflII CTTAAG 1 cut(s) 343
AflIII ACRYGT 2 cut(s) 525, 785
AgsI TTSAA 5 cut(s) 158, 189, 420, 726, 742
AjnI CCWGG 1 cut(s) 5
AluBI AGCT 4 cut(s) 161, 181, 323, 342
AluI AGCT 4 cut(s) 161, 181, 323, 342
Alw26I GTCTC 3 cut(s) 109, 385, 399
AlwI GGATC 2 cut(s) 379, 659
AoxI GGCC 2 cut(s) 72, 622
ApeKI GCWGC 1 cut(s) 161
ArsI GACNNNNNNTTYG 2 cut(s) 104, 136
AspLEI GCGC 1 cut(s) 440
AspS9I GGNCC 2 cut(s) 9, 240
AvaII GGWCC 2 cut(s) 9, 240
BauI CACGAG 1 cut(s) 764
BbvI GCAGC 1 cut(s) 148
BccI CCATC 2 cut(s) 513, 559
BceAI ACGGC 2 cut(s) 125, 212
BcgI CGANNNNNNTGC 2 cut(s) 104, 138
BciT130I CCWGG 1 cut(s) 7
BcoDI GTCTC 3 cut(s) 109, 385, 399
BfaI CTAG 1 cut(s) 26
BfmI CTRYAG 1 cut(s) 333
BfrI CTTAAG 1 cut(s) 343
BfuAI ACCTGC 1 cut(s) 802
BisI GCNGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 163
Bme1390I CCNGG 1 cut(s) 7
Bme18I GGWCC 2 cut(s) 9, 240
BmgT120I GGNCC 2 cut(s) 9, 240
BmiI GGNNCC 3 cut(s) 11, 267, 363
BmrFI CCNGG 1 cut(s) 7
BmsI GCATC 1 cut(s) 106
Bpu10I CCTNAGC 1 cut(s) 69
BsaBI GATNNNNATC 1 cut(s) 663
BsaHI GRCGYC 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 243
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 244
Bse118I RCCGGY 1 cut(s) 74
Bse1I ACTGG 1 cut(s) 696
Bse8I GATNNNNATC 1 cut(s) 663
BseBI CCWGG 1 cut(s) 7
BseDI CCNNGG 1 cut(s) 243
BseGI GGATG 3 cut(s) 418, 524, 657
BseJI GATNNNNATC 1 cut(s) 663
BseLI CCNNNNNNNGG 2 cut(s) 59, 244
BseMII CTCAG 3 cut(s) 83, 396, 746
BseNI ACTGG 1 cut(s) 696
BseRI GAGGAG 2 cut(s) 42, 798
BseXI GCAGC 1 cut(s) 148
BseYI CCCAGC 1 cut(s) 399
Bsh1285I CGRYCG 2 cut(s) 79, 83
BshFI GGCC 2 cut(s) 74, 624
BsiEI CGRYCG 2 cut(s) 79, 83
BsiSI CCGG 2 cut(s) 75, 238
BslFI GGGAC 1 cut(s) 748
BslI CCNNNNNNNGG 2 cut(s) 59, 244
BsmAI GTCTC 3 cut(s) 109, 385, 399
BsmFI GGGAC 1 cut(s) 748
BsmI GAATGC 1 cut(s) 229
BsnI GGCC 2 cut(s) 74, 624
Bsp1407I TGTACA 1 cut(s) 788
Bsp143I GATC 4 cut(s) 80, 371, 664, 768
BspACI CCGC 1 cut(s) 176
BspANI GGCC 2 cut(s) 74, 624
BspCNI CTCAG 3 cut(s) 82, 395, 747
BspLI GGNNCC 3 cut(s) 11, 267, 363
BspMI ACCTGC 1 cut(s) 802
BspPI GGATC 2 cut(s) 379, 659
BspQI GCTCTTC 1 cut(s) 171
BspTI CTTAAG 1 cut(s) 343
BsrFI RCCGGY 1 cut(s) 74
BsrGI TGTACA 1 cut(s) 788
BsrI ACTGG 1 cut(s) 696
BssAI RCCGGY 1 cut(s) 74
BssECI CCNNGG 1 cut(s) 243
BssMI GATC 4 cut(s) 80, 371, 664, 768
BssNI GRCGYC 1 cut(s) 45
BssSI CACGAG 1 cut(s) 764
BssT1I CCWWGG 1 cut(s) 243
Bst2BI CACGAG 1 cut(s) 764
Bst2UI CCWGG 1 cut(s) 7
Bst4CI ACNGT 1 cut(s) 358
Bst6I CTCTTC 1 cut(s) 171
BstACI GRCGYC 1 cut(s) 45
BstAFI CTTAAG 1 cut(s) 343
BstAUI TGTACA 1 cut(s) 788
BstC8I GCNNGC 2 cut(s) 127, 183
BstDEI CTNAG 3 cut(s) 69, 382, 755
BstF5I GGATG 3 cut(s) 418, 524, 657
BstHHI GCGC 1 cut(s) 440
BstKTI GATC 4 cut(s) 83, 374, 667, 771
BstMAI GTCTC 3 cut(s) 109, 385, 399
BstMBI GATC 4 cut(s) 80, 371, 664, 768
BstMCI CGRYCG 2 cut(s) 79, 83
BstMWI GCNNNNNNNGC 2 cut(s) 182, 224
BstNI CCWGG 1 cut(s) 7
BstNSI RCATGY 2 cut(s) 529, 789
BstSCI CCNGG 1 cut(s) 5
BstSFI CTRYAG 1 cut(s) 333
BstV1I GCAGC 1 cut(s) 148
BstX2I RGATCY 1 cut(s) 664
BstXI CCANNNNNNTGG 1 cut(s) 565
BstYI RGATCY 1 cut(s) 664
BsuRI GGCC 2 cut(s) 74, 624
BtsCI GGATG 3 cut(s) 418, 524, 657
BveI ACCTGC 1 cut(s) 802
Cac8I GCNNGC 2 cut(s) 127, 183
CfoI GCGC 1 cut(s) 440
Cfr10I RCCGGY 1 cut(s) 74
Cfr13I GGNCC 2 cut(s) 9, 240
CseI GACGC 1 cut(s) 53
Csp6I GTAC 2 cut(s) 479, 789
CviAII CATG 2 cut(s) 526, 786
CviQI GTAC 2 cut(s) 479, 789
DdeI CTNAG 3 cut(s) 69, 382, 755
DpnI GATC 4 cut(s) 82, 373, 666, 770
DpnII GATC 4 cut(s) 80, 371, 664, 768
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco130I CCWWGG 1 cut(s) 243
Eco47I GGWCC 2 cut(s) 9, 240
Eco57I CTGAAG 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 5
EcoT14I CCWWGG 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 2 cut(s) 529, 789
FalI AAGNNNNNCTT 4 cut(s) 150, 182, 165, 197
FaqI GGGAC 1 cut(s) 748
FatI CATG 2 cut(s) 525, 785
Fnu4HI GCNGC 1 cut(s) 162
FokI GGATG 3 cut(s) 425, 531, 664
Fsp4HI GCNGC 1 cut(s) 162
FspBI CTAG 1 cut(s) 26
GlaI GCGC 1 cut(s) 439
GluI GCNGC 1 cut(s) 162
GsaI CCCAGC 1 cut(s) 403
HaeIII GGCC 2 cut(s) 74, 624
HapII CCGG 2 cut(s) 75, 238
HgaI GACGC 1 cut(s) 53
HhaI GCGC 1 cut(s) 440
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 2 cut(s) 529, 789
Hin6I GCGC 1 cut(s) 438
HinP1I GCGC 1 cut(s) 438
HinfI GANTC 4 cut(s) 95, 232, 298, 329
HpaII CCGG 2 cut(s) 75, 238
Hpy166II GTNNAC 1 cut(s) 791
Hpy188I TCNGA 6 cut(s) 171, 222, 385, 564, 756, 783
Hpy188III TCNNGA 2 cut(s) 677, 766
Hpy8I GTNNAC 1 cut(s) 791
Hpy99I CGWCG 3 cut(s) 47, 116, 146
HpyAV CCTTC 2 cut(s) 85, 490
HpyCH4III ACNGT 1 cut(s) 358
HpyCH4V TGCA 5 cut(s) 212, 277, 353, 548, 797
HpyF10VI GCNNNNNNNGC 2 cut(s) 182, 224
HpyF3I CTNAG 3 cut(s) 69, 382, 755
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 2 cut(s) 529, 789
HspAI GCGC 1 cut(s) 438
Kzo9I GATC 4 cut(s) 80, 371, 664, 768
LguI GCTCTTC 1 cut(s) 171
LmnI GCTCC 3 cut(s) 178, 320, 361
Lsp1109I GCAGC 1 cut(s) 148
LweI GCATC 1 cut(s) 106
MaeI CTAG 1 cut(s) 26
MaeIII GTNAC 1 cut(s) 312
MalI GATC 4 cut(s) 82, 373, 666, 770
MboI GATC 4 cut(s) 80, 371, 664, 768
MboII GAAGA 6 cut(s) 158, 307, 318, 441, 471, 763
MfeI CAATTG 1 cut(s) 420
MflI RGATCY 1 cut(s) 664
MluCI AATT 4 cut(s) 420, 721, 742, 798
MlyI GAGTC 2 cut(s) 89, 338
MnlI CCTC 7 cut(s) 58, 63, 140, 256, 341, 506, 816
MseI TTAA 4 cut(s) 258, 344, 491, 814
MslI CAYNNNNRTG 1 cut(s) 563
MspCI CTTAAG 1 cut(s) 343
MspI CCGG 2 cut(s) 75, 238
MspR9I CCNGG 1 cut(s) 7
MunI CAATTG 1 cut(s) 420
Mva1269I GAATGC 1 cut(s) 229
MvaI CCWGG 1 cut(s) 7
MwoI GCNNNNNNNGC 2 cut(s) 182, 224
NdeII GATC 4 cut(s) 80, 371, 664, 768
NlaIII CATG 2 cut(s) 529, 789
NlaIV GGNNCC 3 cut(s) 11, 267, 363
NmeAIII GCCGAG 1 cut(s) 44
NspI RCATGY 2 cut(s) 529, 789
PaqCI CACCTGC 1 cut(s) 802
PciI ACATGT 2 cut(s) 525, 785
PciSI GCTCTTC 1 cut(s) 171
PctI GAATGC 1 cut(s) 229
PfeI GAWTC 2 cut(s) 232, 298
PkrI GCNGC 1 cut(s) 163
Ple19I CGATCG 1 cut(s) 83
PleI GAGTC 2 cut(s) 89, 337
PpsI GAGTC 2 cut(s) 89, 337
PscI ACATGT 2 cut(s) 525, 785
Psp6I CCWGG 1 cut(s) 5
PspFI CCCAGC 1 cut(s) 399
PspGI CCWGG 1 cut(s) 5
PspN4I GGNNCC 3 cut(s) 11, 267, 363
PspPI GGNCC 2 cut(s) 9, 240
PsuI RGATCY 1 cut(s) 664
PvuI CGATCG 1 cut(s) 83
RsaI GTAC 2 cut(s) 480, 790
RsaNI GTAC 2 cut(s) 479, 789
RseI CAYNNNNRTG 1 cut(s) 563
SapI GCTCTTC 1 cut(s) 171
SaqAI TTAA 4 cut(s) 258, 344, 491, 814
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 4 cut(s) 80, 371, 664, 768
Sau96I GGNCC 2 cut(s) 9, 240
SchI GAGTC 2 cut(s) 89, 338
ScrFI CCNGG 1 cut(s) 7
SfaNI GCATC 1 cut(s) 106
SfcI CTRYAG 1 cut(s) 333
SinI GGWCC 2 cut(s) 9, 240
SmiMI CAYNNNNRTG 1 cut(s) 563
SmlI CTYRAG 1 cut(s) 343
SmoI CTYRAG 1 cut(s) 343
Sse9I AATT 4 cut(s) 420, 721, 742, 798
SsiI CCGC 1 cut(s) 176
SspMI CTAG 1 cut(s) 26
StyD4I CCNGG 1 cut(s) 5
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 1 cut(s) 358
TaqI TCGA 5 cut(s) 79, 83, 144, 150, 250
TasI AATT 4 cut(s) 420, 721, 742, 798
TatI WGTACW 2 cut(s) 478, 788
TfiI GAWTC 2 cut(s) 232, 298
Tru1I TTAA 4 cut(s) 258, 344, 491, 814
Tru9I TTAA 4 cut(s) 258, 344, 491, 814
TseI GCWGC 1 cut(s) 161
TspDTI ATGAA 6 cut(s) 290, 509, 526, 644, 668, 735
TspGWI ACGGA 1 cut(s) 50
Vha464I CTTAAG 1 cut(s) 343
VpaK11BI GGWCC 2 cut(s) 9, 240
XceI RCATGY 2 cut(s) 529, 789
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.