Rh6DG482800

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Forward (+)
64615669 .. 64616308
640 bp
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UTR
Exon/CDS
Intron
Rh6DG482800.1

Sequence Viewer

Length: 375 bp
ATGAGGATGATTGCTGGAAAAAGATACTATGGTGAAGACAGGACAGGATTGGAGGAAGCTAAGAGGTTTGAGCAGATTGTGGTAGAGACATTTCAATTGAGTGGAGCTACTAACATTGGAGATTTTGTACCAGTTTTGAAATATGTTGGAGCAAACGGGCTTGAAAGAAAGTTGTTGATATTGCAAAAGAAGAGGGACAAGTTCATGCAAGATTTGATTGAAGAACATAGAAAAGGGCAGAGTGGCTCTGTTTCTGAACAGAGGAGCAAGACCATGGTGGATGTGTTGCTGTCACTGCAAGAAACTGAACCTGAATACTACACTGATGAAATCATAAGAGGCCTGATGCAAGTAAGCTTCCTCACTCGAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

124

Amino Acids

14.34

Weight (kDa)

6.61

Isoelectric Point (pI)

48.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021271)

Species Orthologous Gene IDs
pyrus_communis pycom08g07300
rosa_chinensis RchiOBHm_Chr6g0309041
rosa_rugosa Rorug06G0369300
rosa_samantha Rh6BG490700 Rh6DG482800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 129
AgsI TTSAA 4 cut(s) 95, 139, 164, 221
AluBI AGCT 3 cut(s) 59, 107, 357
AluI AGCT 3 cut(s) 59, 107, 357
Alw26I GTCTC 1 cut(s) 80
AoxI GGCC 1 cut(s) 340
AsuHPI GGTGA 1 cut(s) 44
BaeI ACNNNNGTAYC 2 cut(s) 16, 49
BbsI GAAGAC 1 cut(s) 42
BcoDI GTCTC 1 cut(s) 80
BfaI CTAG 1 cut(s) 373
BmsI GCATC 1 cut(s) 336
BpiI GAAGAC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 273
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bse1I ACTGG 1 cut(s) 131
BseDI CCNNGG 1 cut(s) 273
BseGI GGATG 2 cut(s) 12, 286
BseNI ACTGG 1 cut(s) 131
BseRI GAGGAG 1 cut(s) 277
BshFI GGCC 1 cut(s) 342
BslFI GGGAC 1 cut(s) 209
BsmAI GTCTC 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 209
BsnI GGCC 1 cut(s) 342
Bsp19I CCATGG 1 cut(s) 273
BspANI GGCC 1 cut(s) 342
BsrI ACTGG 1 cut(s) 131
BssECI CCNNGG 1 cut(s) 273
BssT1I CCWWGG 1 cut(s) 273
Bst6I CTCTTC 1 cut(s) 185
BstDEI CTNAG 1 cut(s) 60
BstDSI CCRYGG 1 cut(s) 273
BstF5I GGATG 2 cut(s) 12, 286
BstMAI GTCTC 1 cut(s) 80
BstMWI GCNNNNNNNGC 1 cut(s) 295
BstV2I GAAGAC 1 cut(s) 42
BsuRI GGCC 1 cut(s) 342
BtgI CCRYGG 1 cut(s) 273
BtsCI GGATG 2 cut(s) 12, 286
BtsI GCAGTG 1 cut(s) 293
BtsIMutI CAGTG 2 cut(s) 293, 321
Csp6I GTAC 1 cut(s) 128
CviAII CATG 2 cut(s) 205, 274
CviJI RGCY 6 cut(s) 59, 107, 160, 246, 342, 357
CviKI_1 RGCY 6 cut(s) 59, 107, 160, 246, 342, 357
CviQI GTAC 1 cut(s) 128
DdeI CTNAG 1 cut(s) 60
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 273
Eco147I AGGCCT 1 cut(s) 342
EcoT14I CCWWGG 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 2 cut(s) 208, 277
FaiI YATR 6 cut(s) 30, 144, 206, 228, 275, 335
FaqI GGGAC 1 cut(s) 209
FatI CATG 2 cut(s) 204, 273
FokI GGATG 2 cut(s) 19, 293
FspBI CTAG 1 cut(s) 373
HaeIII GGCC 1 cut(s) 342
Hin1II CATG 2 cut(s) 208, 277
HindIII AAGCTT 1 cut(s) 355
HphI GGTGA 1 cut(s) 44
Hpy188I TCNGA 1 cut(s) 256
HpyCH4V TGCA 4 cut(s) 184, 208, 298, 349
HpyF10VI GCNNNNNNNGC 1 cut(s) 295
HpyF3I CTNAG 1 cut(s) 60
Hsp92II CATG 2 cut(s) 208, 277
LmnI GCTCC 3 cut(s) 104, 149, 264
LpnPI CCDG 5 cut(s) 25, 30, 144, 324, 356
LweI GCATC 1 cut(s) 336
MaeI CTAG 1 cut(s) 373
MaeIII GTNAC 1 cut(s) 291
MboII GAAGA 3 cut(s) 47, 202, 233
MfeI CAATTG 1 cut(s) 95
MluCI AATT 1 cut(s) 95
MmeI TCCRAC 1 cut(s) 127
MnlI CCTC 6 cut(s) 46, 57, 186, 255, 332, 371
MunI CAATTG 1 cut(s) 95
MwoI GCNNNNNNNGC 1 cut(s) 295
NcoI CCATGG 1 cut(s) 273
NlaIII CATG 2 cut(s) 208, 277
NmuCI GTSAC 1 cut(s) 291
PceI AGGCCT 1 cut(s) 342
RsaI GTAC 1 cut(s) 129
RsaNI GTAC 1 cut(s) 128
SetI ASST 5 cut(s) 61, 68, 109, 313, 359
SfaNI GCATC 1 cut(s) 336
Sse9I AATT 1 cut(s) 95
SseBI AGGCCT 1 cut(s) 342
SspMI CTAG 1 cut(s) 373
StuI AGGCCT 1 cut(s) 342
StyI CCWWGG 1 cut(s) 273
TaqI TCGA 1 cut(s) 367
TasI AATT 1 cut(s) 95
TscAI CASTG 2 cut(s) 300, 328
TseFI GTSAC 1 cut(s) 291
Tsp45I GTSAC 1 cut(s) 291
TspDTI ATGAA 2 cut(s) 193, 342
TspRI CASTG 2 cut(s) 300, 328
XspI CTAG 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.