Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0021468

Physical Location & Seq

Genomic Coordinates Reverse (-)

5521524 .. 5527193

Gene Structure 5670 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG077300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGTCTAAGGTGGGTTATAATTCAACTGAGGATGAAGATTGGGAAGTTGCTACAAGTGGGGAAGAGATGAGCAAATCTGGCTCTTCAGATACAGATTTGGAATTGAACTTTTTAACTTCTTTGTGTGAGGTTTTGATTAGGGATGTAGCTCCAAGGATAAAAAGGGAAATTTTATTTGATGACCAGGATCTATCAGAGGCTAGGAGCACAGACCTATCAGAGAATGTAGAACAAAAGCATGTTTCCTCAGACCAAGACCAAAGCTCAATGCTTAAGGTTATCTGCAATCAGCTAGATCGATTCAGGGCATGCTTGAGAGAGACAGAAGAAGAAATTAGACAGTTGAAGGAAAAGATAGGAGCTCTAACAGTGGAACTGGAAAGGACAAAAGCTGATAATGCCATGTTCAGGACTACAGTCTTGAAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0016021 GO:0016192 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048193 GO:0051179 GO:0051234 GO:0097708 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CASP_C

Protein Analysis

143

Amino Acids

16.34

Weight (kDa)

4.62

Isoelectric Point (pI)

50.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_C	PF08172	69 - 134	1.9e-11	CASP C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0021468)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0184881 RchiOBHm_Chr7g0184901
rosa_samantha	Rh7AG077300 Rh7CG070900 Rh7DG070200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	18
AclWI	GGATC	1 cut(s)	195
AcsI	RAATTY	1 cut(s)	168
AcuI	CTGAAG	1 cut(s)	69
AfiI	CCNNNNNNNGG	1 cut(s)	408
AflII	CTTAAG	1 cut(s)	272
AgsI	TTSAA	4 cut(s)	24, 106, 346, 424
AjnI	CCWGG	1 cut(s)	183
AluBI	AGCT	5 cut(s)	149, 264, 292, 362, 392
AluI	AGCT	5 cut(s)	149, 264, 292, 362, 392
Alw21I	GWGCWC	2 cut(s)	209, 364
Alw26I	GTCTC	1 cut(s)	314
AlwI	GGATC	1 cut(s)	195
ApoI	RAATTY	1 cut(s)	168
BanII	GRGCYC	1 cut(s)	364
Bbv12I	GWGCWC	2 cut(s)	209, 364
BciT130I	CCWGG	1 cut(s)	185
BcoDI	GTCTC	1 cut(s)	314
BfaI	CTAG	2 cut(s)	201, 293
BfmI	CTRYAG	1 cut(s)	414
BfrI	CTTAAG	1 cut(s)	272
Bme1390I	CCNGG	1 cut(s)	185
BmrFI	CCNGG	1 cut(s)	185
BoxI	GACNNNNGTC	1 cut(s)	416
BpuEI	CTTGAG	1 cut(s)	334
Bsa29I	ATCGAT	1 cut(s)	298
BsaJI	CCNNGG	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	1 cut(s)	408
Bse1I	ACTGG	1 cut(s)	381
BseBI	CCWGG	1 cut(s)	185
BseCI	ATCGAT	1 cut(s)	298
BseDI	CCNNGG	1 cut(s)	152
BseGI	GGATG	2 cut(s)	37, 148
BseLI	CCNNNNNNNGG	1 cut(s)	408
BseMII	CTCAG	2 cut(s)	18, 261
BseNI	ACTGG	1 cut(s)	381
BshVI	ATCGAT	1 cut(s)	298
BsiHKAI	GWGCWC	2 cut(s)	209, 364
BslI	CCNNNNNNNGG	1 cut(s)	408
BsmAI	GTCTC	1 cut(s)	314
Bsp1286I	GDGCHC	2 cut(s)	209, 364
Bsp143I	GATC	2 cut(s)	187, 295
BspCNI	CTCAG	2 cut(s)	19, 260
BspDI	ATCGAT	1 cut(s)	298
BspPI	GGATC	1 cut(s)	195
BspQI	GCTCTTC	1 cut(s)	88
BspTI	CTTAAG	1 cut(s)	272
BsrI	ACTGG	1 cut(s)	381
BssECI	CCNNGG	1 cut(s)	152
BssMI	GATC	2 cut(s)	187, 295
BssT1I	CCWWGG	1 cut(s)	152
Bst2UI	CCWGG	1 cut(s)	185
Bst4CI	ACNGT	3 cut(s)	342, 370, 418
Bst6I	CTCTTC	2 cut(s)	57, 88
BstAFI	CTTAAG	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	310
BstDEI	CTNAG	3 cut(s)	6, 27, 247
BstF5I	GGATG	2 cut(s)	37, 148
BstKTI	GATC	2 cut(s)	190, 298
BstMAI	GTCTC	1 cut(s)	314
BstMBI	GATC	2 cut(s)	187, 295
BstMWI	GCNNNNNNNGC	2 cut(s)	78, 398
BstNI	CCWGG	1 cut(s)	185
BstNSI	RCATGY	2 cut(s)	242, 312
BstPAI	GACNNNNGTC	1 cut(s)	416
BstSCI	CCNGG	1 cut(s)	183
BstSFI	CTRYAG	1 cut(s)	414
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
Bsu15I	ATCGAT	1 cut(s)	298
BsuTUI	ATCGAT	1 cut(s)	298
BtsCI	GGATG	2 cut(s)	37, 148
BtsIMutI	CAGTG	1 cut(s)	375
Cac8I	GCNNGC	1 cut(s)	310
ClaI	ATCGAT	1 cut(s)	298
CviAII	CATG	3 cut(s)	239, 309, 403
CviJI	RGCY	7 cut(s)	81, 149, 200, 264, 292, 362, 392
CviKI_1	RGCY	7 cut(s)	81, 149, 200, 264, 292, 362, 392
DdeI	CTNAG	3 cut(s)	6, 27, 247
DpnI	GATC	2 cut(s)	189, 297
DpnII	GATC	2 cut(s)	187, 295
Eam1104I	CTCTTC	2 cut(s)	57, 88
EarI	CTCTTC	2 cut(s)	57, 88
Ecl136II	GAGCTC	1 cut(s)	362
Eco130I	CCWWGG	1 cut(s)	152
Eco24I	GRGCYC	1 cut(s)	364
Eco53kI	GAGCTC	1 cut(s)	362
Eco57I	CTGAAG	1 cut(s)	69
EcoICRI	GAGCTC	1 cut(s)	362
EcoRII	CCWGG	1 cut(s)	183
EcoT14I	CCWWGG	1 cut(s)	152
EcoT38I	GRGCYC	1 cut(s)	364
ErhI	CCWWGG	1 cut(s)	152
FaeI	CATG	3 cut(s)	242, 312, 406
FaiI	YATR	4 cut(s)	18, 240, 310, 404
FatI	CATG	3 cut(s)	238, 308, 402
FokI	GGATG	2 cut(s)	44, 155
FriOI	GRGCYC	1 cut(s)	364
FspBI	CTAG	2 cut(s)	201, 293
Hin1II	CATG	3 cut(s)	242, 312, 406
HinfI	GANTC	1 cut(s)	300
Hpy188I	TCNGA	4 cut(s)	88, 196, 220, 250
Hpy188III	TCNNGA	2 cut(s)	409, 421
HpyAV	CCTTC	1 cut(s)	340
HpyCH4III	ACNGT	3 cut(s)	342, 370, 418
HpyCH4V	TGCA	1 cut(s)	285
HpyF10VI	GCNNNNNNNGC	2 cut(s)	78, 398
HpyF3I	CTNAG	3 cut(s)	6, 27, 247
Hsp92II	CATG	3 cut(s)	242, 312, 406
Kzo9I	GATC	2 cut(s)	187, 295
LguI	GCTCTTC	1 cut(s)	88
LmnI	GCTCC	3 cut(s)	154, 204, 359
LpnPI	CCDG	6 cut(s)	63, 170, 197, 289, 362, 394
MaeI	CTAG	2 cut(s)	201, 293
MalI	GATC	2 cut(s)	189, 297
MboI	GATC	2 cut(s)	187, 295
MboII	GAAGA	5 cut(s)	47, 74, 75, 338, 341
MflI	RGATCY	1 cut(s)	187
MhlI	GDGCHC	2 cut(s)	209, 364
MluCI	AATT	4 cut(s)	19, 101, 168, 333
MnlI	CCTC	4 cut(s)	22, 121, 190, 256
MseI	TTAA	2 cut(s)	113, 273
MspCI	CTTAAG	1 cut(s)	272
MspR9I	CCNGG	1 cut(s)	185
MvaI	CCWGG	1 cut(s)	185
MwoI	GCNNNNNNNGC	2 cut(s)	78, 398
NdeII	GATC	2 cut(s)	187, 295
NlaIII	CATG	3 cut(s)	242, 312, 406
NspI	RCATGY	2 cut(s)	242, 312
PaeI	GCATGC	1 cut(s)	312
PciSI	GCTCTTC	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	300
PshAI	GACNNNNGTC	1 cut(s)	416
PsiI	TTATAA	1 cut(s)	18
Psp124BI	GAGCTC	1 cut(s)	364
Psp6I	CCWGG	1 cut(s)	183
PspGI	CCWGG	1 cut(s)	183
PsuI	RGATCY	1 cut(s)	187
SacI	GAGCTC	1 cut(s)	364
SapI	GCTCTTC	1 cut(s)	88
SaqAI	TTAA	2 cut(s)	113, 273
Sau3AI	GATC	2 cut(s)	187, 295
ScrFI	CCNGG	1 cut(s)	185
SduI	GDGCHC	2 cut(s)	209, 364
SetI	ASST	9 cut(s)	12, 132, 151, 216, 266, 279, 294, 364, 394
SfcI	CTRYAG	1 cut(s)	414
SmlI	CTYRAG	2 cut(s)	272, 313
SmoI	CTYRAG	2 cut(s)	272, 313
SphI	GCATGC	1 cut(s)	312
Sse9I	AATT	4 cut(s)	19, 101, 168, 333
SspMI	CTAG	2 cut(s)	201, 293
SstI	GAGCTC	1 cut(s)	364
StyD4I	CCNGG	1 cut(s)	183
StyI	CCWWGG	1 cut(s)	152
TaaI	ACNGT	3 cut(s)	342, 370, 418
TaqI	TCGA	1 cut(s)	298
TasI	AATT	4 cut(s)	19, 101, 168, 333
TfiI	GAWTC	1 cut(s)	300
Tru1I	TTAA	2 cut(s)	113, 273
Tru9I	TTAA	2 cut(s)	113, 273
TscAI	CASTG	1 cut(s)	375
TspDTI	ATGAA	1 cut(s)	48
TspRI	CASTG	1 cut(s)	375
Vha464I	CTTAAG	1 cut(s)	272
XapI	RAATTY	1 cut(s)	168
XceI	RCATGY	2 cut(s)	242, 312
XspI	CTAG	2 cut(s)	201, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.