Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0021468

Physical Location & Seq

Genomic Coordinates Forward (+)

5067069 .. 5070729

Gene Structure 3661 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG070900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGAGCAAATCTGGCTTTTCAGATACAGATTTGGAATTGAACTTTTTAACTTCTTTGTGTGAGGTTTTGATTAGGGATGTAGCTCCAAGGATAAAAAGGGAAATTTTATTTGATGACCAGCAGGATCTATCAGAGGCTAGAAGCACAGACCTATCAGAGAATGCAGAACAAAAGCATGTTTCCTCAGACCAAGACCAAAGCTCAATGCTTAAGGTTATCTGCAATCAGCTAGATCGATTCAGGGCATGCTTGAGAGAGACAGAAGAAGAAATTAGACAGCTGAAGGAAAAGATAGGAGCTCTAACAGTGGAACTGGAAAGGACAAAAGCTGATAATGCCATGTTCAGGACTACAGTCTTGAAAAAAATCAAGGGTGATAAGCCAGCTAAAGTTAGTGGCTTTAATGGGTTTTCAGTTCCAGGCCAGACTTTATCAGAGGCCTTCTTATTGGATTATTTTGTTACTGTGGCAAGACTAAGCAGCTTGGAAGTCCTCAGTCTTGTCTATTTGGGAATCTGGGTTTCAGACAAAATTCATAGGTTGACTTCCCTTGAATATCTGGATTTGAGTTCAGTCCCTCCTTGGATTGCTGCAATGGTGAAGCTTCAAACTCTGGTAATGGATAACAATTTCTTGAATGGCACTGTTCCCAATTGGTTTGGTTCACTATCCAATCTTTCAACTCTAAGCTGTAGAAATAGCCAGTTGAAAGGTCATCTCAGTAGCATAGGTAGCTTACAAGTAATTGATTTAAGCGTGAACAATTTCAATGCTGTATCACCTTCAATGCCAAAAAGGTTGGTCGTGCTTTCCCTCAGCAAGAATTCCTTCTCTGGTGAGATTCCTCGCAATATTGAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0016021 GO:0016192 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048193 GO:0051179 GO:0051234 GO:0097708 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CASP_C

Protein Analysis

287

Amino Acids

32.07

Weight (kDa)

5.76

Isoelectric Point (pI)

38.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_C	PF08172	48 - 113	2.5e-10	CASP C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0021468)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0184881 RchiOBHm_Chr7g0184901
rosa_samantha	Rh7AG077300 Rh7CG070900 Rh7DG070200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	132
AcsI	RAATTY	3 cut(s)	102, 531, 823
AcuI	CTGAAG	1 cut(s)	302
AfiI	CCNNNNNNNGG	1 cut(s)	345
AflII	CTTAAG	1 cut(s)	209
AjnI	CCWGG	1 cut(s)	418
Alw21I	GWGCWC	1 cut(s)	301
Alw26I	GTCTC	1 cut(s)	251
AlwI	GGATC	1 cut(s)	132
AoxI	GGCC	2 cut(s)	421, 438
ApeKI	GCWGC	2 cut(s)	480, 590
ApoI	RAATTY	3 cut(s)	102, 531, 823
Asp700I	GAANNNNTTC	2 cut(s)	764, 827
AsuHPI	GGTGA	4 cut(s)	386, 610, 771, 848
BanII	GRGCYC	1 cut(s)	301
Bbv12I	GWGCWC	1 cut(s)	301
BbvCI	CCTCAGC	1 cut(s)	815
BbvI	GCAGC	2 cut(s)	492, 577
BciT130I	CCWGG	1 cut(s)	420
BcoDI	GTCTC	1 cut(s)	251
BfaI	CTAG	2 cut(s)	138, 230
BfmI	CTRYAG	2 cut(s)	351, 691
BfrI	CTTAAG	1 cut(s)	209
BisI	GCNGC	2 cut(s)	481, 591
BlsI	GCNGC	2 cut(s)	482, 592
Bme1390I	CCNGG	1 cut(s)	420
BmrFI	CCNGG	1 cut(s)	420
BoxI	GACNNNNGTC	1 cut(s)	353
Bpu10I	CCTNAGC	1 cut(s)	815
BpuEI	CTTGAG	1 cut(s)	271
Bsa29I	ATCGAT	1 cut(s)	235
BsaJI	CCNNGG	2 cut(s)	86, 581
Bsc4I	CCNNNNNNNGG	1 cut(s)	345
Bse1I	ACTGG	2 cut(s)	318, 703
Bse3DI	GCAATG	1 cut(s)	600
BseBI	CCWGG	1 cut(s)	420
BseCI	ATCGAT	1 cut(s)	235
BseDI	CCNNGG	2 cut(s)	86, 581
BseGI	GGATG	1 cut(s)	82
BseLI	CCNNNNNNNGG	1 cut(s)	345
BseMI	GCAATG	1 cut(s)	600
BseMII	CTCAG	4 cut(s)	198, 508, 733, 829
BseNI	ACTGG	2 cut(s)	318, 703
BseXI	GCAGC	2 cut(s)	492, 577
BshFI	GGCC	2 cut(s)	423, 440
BshVI	ATCGAT	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	301
BslFI	GGGAC	1 cut(s)	560
BslI	CCNNNNNNNGG	1 cut(s)	345
BsmAI	GTCTC	1 cut(s)	251
BsmFI	GGGAC	1 cut(s)	560
BsmI	GAATGC	1 cut(s)	166
BsnI	GGCC	2 cut(s)	423, 440
Bsp1286I	GDGCHC	1 cut(s)	301
Bsp143I	GATC	2 cut(s)	124, 232
BspANI	GGCC	2 cut(s)	423, 440
BspCNI	CTCAG	4 cut(s)	197, 507, 732, 828
BspDI	ATCGAT	1 cut(s)	235
BspPI	GGATC	1 cut(s)	132
BspTI	CTTAAG	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	600
BsrI	ACTGG	2 cut(s)	318, 703
BssECI	CCNNGG	2 cut(s)	86, 581
BssMI	GATC	2 cut(s)	124, 232
BssT1I	CCWWGG	2 cut(s)	86, 581
Bst2UI	CCWGG	1 cut(s)	420
Bst4CI	ACNGT	4 cut(s)	307, 355, 466, 646
BstAFI	CTTAAG	1 cut(s)	209
BstC8I	GCNNGC	2 cut(s)	247, 384
BstDEI	CTNAG	6 cut(s)	184, 476, 494, 686, 719, 815
BstF5I	GGATG	1 cut(s)	82
BstKTI	GATC	2 cut(s)	127, 235
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	2 cut(s)	124, 232
BstMWI	GCNNNNNNNGC	3 cut(s)	12, 335, 732
BstNI	CCWGG	1 cut(s)	420
BstNSI	RCATGY	2 cut(s)	179, 249
BstPAI	GACNNNNGTC	1 cut(s)	353
BstSCI	CCNGG	1 cut(s)	418
BstSFI	CTRYAG	2 cut(s)	351, 691
BstV1I	GCAGC	2 cut(s)	492, 577
BstX2I	RGATCY	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	124
Bsu15I	ATCGAT	1 cut(s)	235
BsuRI	GGCC	2 cut(s)	423, 440
BsuTUI	ATCGAT	1 cut(s)	235
BtsCI	GGATG	1 cut(s)	82
BtsIMutI	CAGTG	2 cut(s)	312, 642
Cac8I	GCNNGC	2 cut(s)	247, 384
ClaI	ATCGAT	1 cut(s)	235
CviAII	CATG	3 cut(s)	176, 246, 340
DdeI	CTNAG	6 cut(s)	184, 476, 494, 686, 719, 815
DpnI	GATC	2 cut(s)	126, 234
DpnII	GATC	2 cut(s)	124, 232
Ecl136II	GAGCTC	1 cut(s)	299
Eco130I	CCWWGG	2 cut(s)	86, 581
Eco147I	AGGCCT	1 cut(s)	440
Eco24I	GRGCYC	1 cut(s)	301
Eco53kI	GAGCTC	1 cut(s)	299
Eco57I	CTGAAG	1 cut(s)	302
EcoICRI	GAGCTC	1 cut(s)	299
EcoRI	GAATTC	1 cut(s)	823
EcoRII	CCWGG	1 cut(s)	418
EcoT14I	CCWWGG	2 cut(s)	86, 581
EcoT38I	GRGCYC	1 cut(s)	301
ErhI	CCWWGG	2 cut(s)	86, 581
FaeI	CATG	3 cut(s)	179, 249, 343
FaiI	YATR	5 cut(s)	177, 247, 341, 537, 728
FalI	AAGNNNNNCTT	2 cut(s)	812, 844
FaqI	GGGAC	1 cut(s)	560
FatI	CATG	3 cut(s)	175, 245, 339
Fnu4HI	GCNGC	2 cut(s)	481, 591
FokI	GGATG	1 cut(s)	89
FriOI	GRGCYC	1 cut(s)	301
Fsp4HI	GCNGC	2 cut(s)	481, 591
FspBI	CTAG	2 cut(s)	138, 230
GluI	GCNGC	2 cut(s)	481, 591
HaeIII	GGCC	2 cut(s)	423, 440
Hin1II	CATG	3 cut(s)	179, 249, 343
HincII	GTYRAC	1 cut(s)	543
HindII	GTYRAC	1 cut(s)	543
HindIII	AAGCTT	1 cut(s)	602
HinfI	GANTC	3 cut(s)	237, 513, 841
HphI	GGTGA	4 cut(s)	386, 610, 771, 848
Hpy166II	GTNNAC	3 cut(s)	543, 665, 760
Hpy188I	TCNGA	6 cut(s)	22, 133, 157, 187, 436, 526
Hpy188III	TCNNGA	4 cut(s)	346, 358, 560, 634
Hpy8I	GTNNAC	3 cut(s)	543, 665, 760
HpyAV	CCTTC	4 cut(s)	277, 451, 792, 838
HpyCH4III	ACNGT	4 cut(s)	307, 355, 466, 646
HpyCH4V	TGCA	3 cut(s)	164, 222, 593
HpyF10VI	GCNNNNNNNGC	3 cut(s)	12, 335, 732
HpyF3I	CTNAG	6 cut(s)	184, 476, 494, 686, 719, 815
Hsp92II	CATG	3 cut(s)	179, 249, 343
Kzo9I	GATC	2 cut(s)	124, 232
LmnI	GCTCC	2 cut(s)	88, 296
Lsp1109I	GCAGC	2 cut(s)	492, 577
MaeI	CTAG	2 cut(s)	138, 230
MaeIII	GTNAC	1 cut(s)	460
MalI	GATC	2 cut(s)	126, 234
MboI	GATC	2 cut(s)	124, 232
MboII	GAAGA	2 cut(s)	275, 278
MfeI	CAATTG	1 cut(s)	652
MflI	RGATCY	1 cut(s)	124
MhlI	GDGCHC	1 cut(s)	301
MluCI	AATT	9 cut(s)	35, 102, 270, 531, 628, 652, 744, 763, 823
MnlI	CCTC	8 cut(s)	55, 127, 193, 430, 503, 588, 824, 855
MroXI	GAANNNNTTC	2 cut(s)	764, 827
MseI	TTAA	4 cut(s)	47, 210, 402, 752
MspA1I	CMGCKG	1 cut(s)	280
MspCI	CTTAAG	1 cut(s)	209
MspR9I	CCNGG	1 cut(s)	420
MunI	CAATTG	1 cut(s)	652
Mva1269I	GAATGC	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	420
MwoI	GCNNNNNNNGC	3 cut(s)	12, 335, 732
NdeII	GATC	2 cut(s)	124, 232
NlaIII	CATG	3 cut(s)	179, 249, 343
NspI	RCATGY	2 cut(s)	179, 249
PaeI	GCATGC	1 cut(s)	249
PceI	AGGCCT	1 cut(s)	440
PctI	GAATGC	1 cut(s)	166
PdmI	GAANNNNTTC	2 cut(s)	764, 827
PfeI	GAWTC	3 cut(s)	237, 513, 841
PkrI	GCNGC	2 cut(s)	482, 592
PshAI	GACNNNNGTC	1 cut(s)	353
Psp124BI	GAGCTC	1 cut(s)	301
Psp6I	CCWGG	1 cut(s)	418
PspGI	CCWGG	1 cut(s)	418
PsuI	RGATCY	1 cut(s)	124
PvuII	CAGCTG	1 cut(s)	280
SacI	GAGCTC	1 cut(s)	301
SaqAI	TTAA	4 cut(s)	47, 210, 402, 752
SatI	GCNGC	2 cut(s)	481, 591
Sau3AI	GATC	2 cut(s)	124, 232
ScrFI	CCNGG	1 cut(s)	420
SduI	GDGCHC	1 cut(s)	301
SfcI	CTRYAG	2 cut(s)	351, 691
SmlI	CTYRAG	2 cut(s)	209, 250
SmoI	CTYRAG	2 cut(s)	209, 250
SphI	GCATGC	1 cut(s)	249
Sse9I	AATT	9 cut(s)	35, 102, 270, 531, 628, 652, 744, 763, 823
SseBI	AGGCCT	1 cut(s)	440
SspI	AATATT	1 cut(s)	853
SspMI	CTAG	2 cut(s)	138, 230
SstI	GAGCTC	1 cut(s)	301
StuI	AGGCCT	1 cut(s)	440
StyD4I	CCNGG	1 cut(s)	418
StyI	CCWWGG	2 cut(s)	86, 581
TaaI	ACNGT	4 cut(s)	307, 355, 466, 646
TaqI	TCGA	1 cut(s)	235
TasI	AATT	9 cut(s)	35, 102, 270, 531, 628, 652, 744, 763, 823
TfiI	GAWTC	3 cut(s)	237, 513, 841
Tru1I	TTAA	4 cut(s)	47, 210, 402, 752
Tru9I	TTAA	4 cut(s)	47, 210, 402, 752
TscAI	CASTG	2 cut(s)	312, 649
TseI	GCWGC	2 cut(s)	480, 590
TspDTI	ATGAA	1 cut(s)	524
TspRI	CASTG	2 cut(s)	312, 649
Vha464I	CTTAAG	1 cut(s)	209
XapI	RAATTY	3 cut(s)	102, 531, 823
XceI	RCATGY	2 cut(s)	179, 249
XmnI	GAANNNNTTC	2 cut(s)	764, 827
XspI	CTAG	2 cut(s)	138, 230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.