Rh7BG024700

Nucleobase-ascorbate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0002055
Physical Location & Seq
Forward (+)
1758499 .. 1763729
5231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG024700.1

Sequence Viewer

Length: 1581 bp
ATGGCTGCAAAAGTGGATGAGCCACAGCCTCACCCACCCAAAGAACAACTACCTGGCGTTTCTTACTGCATTACAAGTCCACCTCCATGGCCTGAGGCCATTCTCCTTGGGTTTCAACATTATATTGTGATGCTTGGCACTTCAGTTCTCATTCCTAGTGCTCTTGTTCCCCAGATGGGAGGTGGAAATGAGGAGAAGGCCAAGGTGATCCAGACCCTACTCTTTGTTGCTGGTTTGAACACCTTGAAGCAAACATTGTTTGGGACTAGACTACCTGCAGTGATTGGAGGGTCATACACGTTTGTTCCCACCACAGTTTCAATCATATTAGCTAGTCGGTTCAGTGATTCTCAAGACCCTATAGACAAATTTAAGAGAACAATGCGGGCAATTCAAGGTGCTCTTATTGTGGCCTCAACCCTTCAGATAGTCTTAGGCTTCAGTGGCCTTTGGCGTAATGTTGTAAGGTTTTTAAGTCCACTTTCAATTGTTCCATTGATAGGACTAGTTGGTTTTGGACTCTACGAGTTAGGTTTTCCTCTGCTTGCCAAATGTGTTGAGATCGGACTGCCAGAGCTTATCATTTTAGTATTTGTCTCTCAGTATTTGCCCCACATATTTCACAGAGGAAAACATGTATTTGATCGTTTTGCTGTTCTATTTGCCATTGTGATCGTGTGGATTTATGCTCATCTGCTCACTGTTGGCGGGGCATATAATGATTCAGGCCCCAAAACACAAGCAAGTTGCCGTACTGACCGTGCTGGACTTATAGATGGTGCTCCATGGATAAGAGTTCCGTATCCCTTCCAATGGGGAGCACCTACATTTGATGCTGGTGAAGCCTTTGCTATGATGACTGCGTCTTTTGTTGCTCTCGTAGAGTCCACTGGTGCTTTCATTGCTGTATCAAGGTATGCTAGTGCAACTCCAGTGCCACCTTCTATTCTGAGTCGTGGGGTTGGTTGGCAGGGTGTTGGGATTCTGATTTCCGGGCTCTTTGGAACTGTGACTGGATCCTCAGTATCTGTAGAGAATGCTGGTCTTTTGGCGCTAACACGTGTTGGCAGTCGAAGGGTTGTGCAAATATCTGCTGGGTTCATGATATTTTTCTCCATTCTGGGCAAATTTGGAGCAGTCTTCGCTTCAATCCCAGGGCCCATCATTGCTGCTTTATATTGTCTATTCTTTGCTTATGTTGGTTCGGGGGGTCTTAGCTTTCTCCAGTTCTGCAACCTGAACAGCTTTCGAACCAAGTTCATATTAGGCTTCTCTATCTTCATGGGTTTGTCTATACCACAGTACTTCAATGAGTACACCCTCCTCAACGGTTATGGTCCAGTCCACACGGGAGGAAGATGGTTTAATGATATGATCAATGTCCCTTTCCAATCGGAAGCGTTTGTGGCGGGCATTATTGCATATTTCTTGGACAACACGCTGCAACGAAATGATAACACAGTTAGGAAGGACAGGGGTAGACATTGGTGGGTCAAGTTCCGGTCATTCAAGGGTGAATCAAGGAGTGAGGAGTTCTATTCATTGCCGTTCAATCTAAACAAGTATTTTCCATCTGTATGA

Protein Analysis

526

Amino Acids

57.53

Weight (kDa)

9.38

Isoelectric Point (pI)

39.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Xan_ur_permease PF00860 33 - 436 7.7e-66 Permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 283
AccI GTMKAC 1 cut(s) 1480
AciI CCGC 3 cut(s) 385, 708, 1409
AclWI GGATC 3 cut(s) 202, 1011, 1024
AcsI RAATTY 2 cut(s) 368, 1127
AcuI CTGAAG 3 cut(s) 126, 407, 424
AcvI CACGTG 1 cut(s) 1061
AfaI GTAC 3 cut(s) 754, 1304, 1316
AfiI CCNNNNNNNGG 3 cut(s) 176, 500, 813
AflIII ACRYGT 4 cut(s) 297, 634, 1058, 1060
AhlI ACTAGT 1 cut(s) 505
AjnI CCWGG 2 cut(s) 52, 1153
AluBI AGCT 4 cut(s) 332, 577, 1218, 1245
AluI AGCT 4 cut(s) 332, 577, 1218, 1245
Alw21I GWGCWC 4 cut(s) 163, 403, 784, 823
Alw26I GTCTC 1 cut(s) 601
AlwI GGATC 3 cut(s) 202, 1011, 1024
AlwNI CAGNNNCTG 1 cut(s) 1028
AoxI GGCC 7 cut(s) 89, 96, 198, 411, 445, 727, 1157
ApaI GGGCCC 1 cut(s) 1161
ApeKI GCWGC 3 cut(s) 5, 1169, 1441
ApoI RAATTY 2 cut(s) 368, 1127
AspLEI GCGC 1 cut(s) 1054
AspS9I GGNCC 4 cut(s) 728, 1157, 1158, 1337
AsuC2I CCSGG 1 cut(s) 994
AsuHPI GGTGA 4 cut(s) 23, 217, 851, 1526
AsuII TTCGAA 1 cut(s) 1249
AvaII GGWCC 1 cut(s) 1337
AxyI CCTNAGG 1 cut(s) 93
BaeGI GKGCMC 1 cut(s) 1161
BamHI GGATCC 1 cut(s) 1016
BanII GRGCYC 2 cut(s) 999, 1161
BbrPI CACGTG 1 cut(s) 1061
BbsI GAAGAC 1 cut(s) 1132
Bbv12I GWGCWC 4 cut(s) 163, 403, 784, 823
BbvI GCAGC 2 cut(s) 1156, 1428
BccI CCATC 5 cut(s) 169, 770, 1169, 1353, 1579
BceAI ACGGC 2 cut(s) 735, 1531
BciT130I CCWGG 2 cut(s) 54, 1155
BciVI GTATCC 1 cut(s) 813
BclI TGATCA 1 cut(s) 1374
BcnI CCSGG 1 cut(s) 994
BcoDI GTCTC 1 cut(s) 601
BcuI ACTAGT 1 cut(s) 505
BfaI CTAG 5 cut(s) 156, 267, 333, 506, 921
BfmI CTRYAG 3 cut(s) 276, 360, 1029
BfoI RGCGCY 1 cut(s) 1055
BfuAI ACCTGC 1 cut(s) 283
BfuI GTATCC 1 cut(s) 813
BisI GCNGC 3 cut(s) 6, 1170, 1442
BlsI GCNGC 3 cut(s) 7, 1171, 1443
BmcAI AGTACT 1 cut(s) 1304
Bme1390I CCNGG 3 cut(s) 54, 994, 1155
Bme18I GGWCC 1 cut(s) 1337
BmgT120I GGNCC 4 cut(s) 728, 1157, 1158, 1337
BmiI GGNNCC 3 cut(s) 730, 1018, 1159
BmrFI CCNGG 3 cut(s) 54, 994, 1155
BmsI GCATC 2 cut(s) 120, 823
BpiI GAAGAC 1 cut(s) 1132
BpmI CTGGAG 2 cut(s) 915, 1208
Bpu14I TTCGAA 1 cut(s) 1249
BpuEI CTTGAG 1 cut(s) 336
BpuMI CCSGG 1 cut(s) 994
BsaAI YACGTR 1 cut(s) 1061
BsaJI CCNNGG 6 cut(s) 86, 106, 201, 785, 1153, 1154
BsaWI WCCGGW 1 cut(s) 1500
Bsc4I CCNNNNNNNGG 3 cut(s) 176, 500, 813
Bse1I ACTGG 5 cut(s) 895, 932, 1018, 1225, 1340
Bse21I CCTNAGG 1 cut(s) 93
Bse3DI GCAATG 3 cut(s) 900, 1164, 1541
BseBI CCWGG 2 cut(s) 54, 1155
BseDI CCNNGG 6 cut(s) 86, 106, 201, 785, 1153, 1154
BseGI GGATG 1 cut(s) 22
BseLI CCNNNNNNNGG 3 cut(s) 176, 500, 813
BseMI GCAATG 3 cut(s) 900, 1164, 1541
BseMII CTCAG 4 cut(s) 84, 614, 941, 1035
BseNI ACTGG 5 cut(s) 895, 932, 1018, 1225, 1340
BseRI GAGGAG 3 cut(s) 206, 1313, 1544
BseSI GKGCMC 1 cut(s) 1161
BseXI GCAGC 2 cut(s) 1156, 1428
BseYI CCCAGC 1 cut(s) 1094
BshFI GGCC 7 cut(s) 91, 98, 200, 413, 447, 729, 1159
BsiHKAI GWGCWC 4 cut(s) 163, 403, 784, 823
BsiSI CCGG 2 cut(s) 993, 1501
BslFI GGGAC 2 cut(s) 277, 1367
BslI CCNNNNNNNGG 3 cut(s) 176, 500, 813
BsmAI GTCTC 1 cut(s) 601
BsmFI GGGAC 2 cut(s) 277, 1367
BsmI GAATGC 1 cut(s) 1042
BsnI GGCC 7 cut(s) 91, 98, 200, 413, 447, 729, 1159
Bsp119I TTCGAA 1 cut(s) 1249
Bsp120I GGGCCC 1 cut(s) 1157
Bsp1286I GDGCHC 6 cut(s) 163, 403, 784, 823, 999, 1161
Bsp143I GATC 6 cut(s) 207, 561, 643, 672, 1016, 1374
Bsp19I CCATGG 2 cut(s) 86, 785
BspACI CCGC 3 cut(s) 385, 708, 1409
BspANI GGCC 7 cut(s) 91, 98, 200, 413, 447, 729, 1159
BspCNI CTCAG 4 cut(s) 85, 613, 942, 1034
BspHI TCATGA 1 cut(s) 1101
BspLI GGNNCC 3 cut(s) 730, 1018, 1159
BspMAI CTGCAG 1 cut(s) 280
BspMI ACCTGC 1 cut(s) 283
BspPI GGATC 3 cut(s) 202, 1011, 1024
BspT104I TTCGAA 1 cut(s) 1249
BsrDI GCAATG 3 cut(s) 900, 1164, 1541
BsrI ACTGG 5 cut(s) 895, 932, 1018, 1225, 1340
BssECI CCNNGG 6 cut(s) 86, 106, 201, 785, 1153, 1154
BssMI GATC 6 cut(s) 207, 561, 643, 672, 1016, 1374
BssT1I CCWWGG 4 cut(s) 86, 106, 201, 785
Bst2UI CCWGG 2 cut(s) 54, 1155
Bst4CI ACNGT 7 cut(s) 316, 703, 761, 1009, 1302, 1331, 1462
BstBAI YACGTR 1 cut(s) 1061
BstBI TTCGAA 1 cut(s) 1249
BstC8I GCNNGC 3 cut(s) 387, 546, 1411
BstDEI CTNAG 6 cut(s) 93, 433, 600, 950, 1021, 1214
BstDSI CCRYGG 2 cut(s) 86, 785
BstF5I GGATG 1 cut(s) 22
BstH2I RGCGCY 1 cut(s) 1055
BstHHI GCGC 1 cut(s) 1054
BstKTI GATC 6 cut(s) 210, 564, 646, 675, 1019, 1377
BstMAI GTCTC 1 cut(s) 601
BstMBI GATC 6 cut(s) 207, 561, 643, 672, 1016, 1374
BstMWI GCNNNNNNNGC 5 cut(s) 444, 842, 902, 1142, 1406
BstNI CCWGG 2 cut(s) 54, 1155
BstNSI RCATGY 1 cut(s) 638
BstSCI CCNGG 3 cut(s) 52, 992, 1153
BstSFI CTRYAG 3 cut(s) 276, 360, 1029
BstSLI GKGCMC 1 cut(s) 1161
BstV1I GCAGC 2 cut(s) 1156, 1428
BstV2I GAAGAC 1 cut(s) 1132
BstX2I RGATCY 1 cut(s) 1016
BstXI CCANNNNNNTGG 1 cut(s) 87
BstYI RGATCY 1 cut(s) 1016
Bsu36I CCTNAGG 1 cut(s) 93
BsuI GTATCC 1 cut(s) 813
BsuRI GGCC 7 cut(s) 91, 98, 200, 413, 447, 729, 1159
BtgI CCRYGG 2 cut(s) 86, 785
BtsCI GGATG 1 cut(s) 22
BtsI GCAGTG 1 cut(s) 285
BtsIMutI CAGTG 6 cut(s) 285, 349, 448, 699, 888, 939
BveI ACCTGC 1 cut(s) 283
Cac8I GCNNGC 3 cut(s) 387, 546, 1411
CaiI CAGNNNCTG 1 cut(s) 1028
CciI TCATGA 1 cut(s) 1101
CfoI GCGC 1 cut(s) 1054
Cfr13I GGNCC 4 cut(s) 728, 1157, 1158, 1337
CseI GACGC 1 cut(s) 852
Csp6I GTAC 3 cut(s) 753, 1303, 1315
CviAII CATG 5 cut(s) 87, 635, 786, 1102, 1282
CviQI GTAC 3 cut(s) 753, 1303, 1315
DdeI CTNAG 6 cut(s) 93, 433, 600, 950, 1021, 1214
DpnI GATC 6 cut(s) 209, 563, 645, 674, 1018, 1376
DpnII GATC 6 cut(s) 207, 561, 643, 672, 1016, 1374
Eco130I CCWWGG 4 cut(s) 86, 106, 201, 785
Eco24I GRGCYC 2 cut(s) 999, 1161
Eco47I GGWCC 1 cut(s) 1337
Eco57I CTGAAG 3 cut(s) 126, 407, 424
Eco72I CACGTG 1 cut(s) 1061
Eco81I CCTNAGG 1 cut(s) 93
EcoO109I RGGNCCY 2 cut(s) 728, 1157
EcoRII CCWGG 2 cut(s) 52, 1153
EcoT14I CCWWGG 4 cut(s) 86, 106, 201, 785
EcoT38I GRGCYC 2 cut(s) 999, 1161
ErhI CCWWGG 4 cut(s) 86, 106, 201, 785
FaeI CATG 5 cut(s) 90, 638, 789, 1105, 1285
FalI AAGNNNNNCTT 2 cut(s) 387, 419
FaqI GGGAC 2 cut(s) 277, 1367
FatI CATG 5 cut(s) 86, 634, 785, 1101, 1281
FauI CCCGC 3 cut(s) 378, 701, 1402
FbaI TGATCA 1 cut(s) 1374
FblI GTMKAC 1 cut(s) 1480
Fnu4HI GCNGC 3 cut(s) 6, 1170, 1442
FokI GGATG 1 cut(s) 29
FriOI GRGCYC 2 cut(s) 999, 1161
Fsp4HI GCNGC 3 cut(s) 6, 1170, 1442
FspBI CTAG 5 cut(s) 156, 267, 333, 506, 921
GlaI GCGC 1 cut(s) 1053
GluI GCNGC 3 cut(s) 6, 1170, 1442
GsaI CCCAGC 1 cut(s) 1098
GsuI CTGGAG 2 cut(s) 915, 1208
HaeII RGCGCY 1 cut(s) 1055
HaeIII GGCC 7 cut(s) 91, 98, 200, 413, 447, 729, 1159
HapII CCGG 2 cut(s) 993, 1501
HgaI GACGC 1 cut(s) 852
HhaI GCGC 1 cut(s) 1054
Hin1II CATG 5 cut(s) 90, 638, 789, 1105, 1285
Hin6I GCGC 1 cut(s) 1052
HinP1I GCGC 1 cut(s) 1052
HinfI GANTC 7 cut(s) 347, 519, 722, 884, 952, 982, 1517
HpaII CCGG 2 cut(s) 993, 1501
HphI GGTGA 4 cut(s) 23, 217, 851, 1526
Hpy166II GTNNAC 6 cut(s) 80, 479, 888, 1317, 1345, 1481
Hpy188I TCNGA 5 cut(s) 426, 566, 951, 987, 1396
Hpy188III TCNNGA 3 cut(s) 211, 353, 1102
Hpy8I GTNNAC 6 cut(s) 80, 479, 888, 1317, 1345, 1481
HpyAV CCTTC 6 cut(s) 190, 431, 817, 951, 1068, 1462
HpyCH4III ACNGT 7 cut(s) 316, 703, 761, 1009, 1302, 1331, 1462
HpyCH4IV ACGT 2 cut(s) 299, 1060
HpyCH4V TGCA 8 cut(s) 8, 69, 278, 926, 1084, 1233, 1421, 1444
HpyF10VI GCNNNNNNNGC 5 cut(s) 444, 842, 902, 1142, 1406
HpyF3I CTNAG 6 cut(s) 93, 433, 600, 950, 1021, 1214
HpySE526I ACGT 2 cut(s) 299, 1060
Hsp92II CATG 5 cut(s) 90, 638, 789, 1105, 1285
HspAI GCGC 1 cut(s) 1052
Ksp22I TGATCA 1 cut(s) 1374
Kzo9I GATC 6 cut(s) 207, 561, 643, 672, 1016, 1374
LmnI GCTCC 3 cut(s) 787, 818, 1133
Lsp1109I GCAGC 2 cut(s) 1156, 1428
LweI GCATC 2 cut(s) 120, 823
MaeI CTAG 5 cut(s) 156, 267, 333, 506, 921
MaeII ACGT 2 cut(s) 299, 1060
MaeIII GTNAC 1 cut(s) 1009
MalI GATC 6 cut(s) 209, 563, 645, 674, 1018, 1376
MboI GATC 6 cut(s) 207, 561, 643, 672, 1016, 1374
MboII GAAGA 3 cut(s) 1132, 1270, 1368
MfeI CAATTG 1 cut(s) 486
MflI RGATCY 1 cut(s) 1016
MhlI GDGCHC 6 cut(s) 163, 403, 784, 823, 999, 1161
MluCI AATT 4 cut(s) 368, 390, 486, 1127
MlyI GAGTC 3 cut(s) 513, 893, 961
MseI TTAA 3 cut(s) 372, 473, 1365
MslI CAYNNNNRTG 2 cut(s) 85, 1576
MspI CCGG 2 cut(s) 993, 1501
MspR9I CCNGG 3 cut(s) 54, 994, 1155
MunI CAATTG 1 cut(s) 486
Mva1269I GAATGC 1 cut(s) 1042
MvaI CCWGG 2 cut(s) 54, 1155
MwoI GCNNNNNNNGC 5 cut(s) 444, 842, 902, 1142, 1406
NciI CCSGG 1 cut(s) 994
NcoI CCATGG 2 cut(s) 86, 785
NdeII GATC 6 cut(s) 207, 561, 643, 672, 1016, 1374
NlaIII CATG 5 cut(s) 90, 638, 789, 1105, 1285
NlaIV GGNNCC 3 cut(s) 730, 1018, 1159
NmuCI GTSAC 1 cut(s) 1009
NspI RCATGY 1 cut(s) 638
NspV TTCGAA 1 cut(s) 1249
PagI TCATGA 1 cut(s) 1101
PasI CCCWGGG 1 cut(s) 1154
PciI ACATGT 1 cut(s) 634
PctI GAATGC 1 cut(s) 1042
PfeI GAWTC 4 cut(s) 347, 722, 982, 1517
PflFI GACNNNGTC 1 cut(s) 862
PkrI GCNGC 3 cut(s) 7, 1171, 1443
PleI GAGTC 3 cut(s) 513, 892, 960
PmaCI CACGTG 1 cut(s) 1061
PmlI CACGTG 1 cut(s) 1061
PpsI GAGTC 3 cut(s) 513, 892, 960
Ppu21I YACGTR 1 cut(s) 1061
PscI ACATGT 1 cut(s) 634
Psp6I CCWGG 2 cut(s) 52, 1153
PspCI CACGTG 1 cut(s) 1061
PspFI CCCAGC 1 cut(s) 1094
PspGI CCWGG 2 cut(s) 52, 1153
PspN4I GGNNCC 3 cut(s) 730, 1018, 1159
PspOMI GGGCCC 1 cut(s) 1157
PspPI GGNCC 4 cut(s) 728, 1157, 1158, 1337
PstI CTGCAG 1 cut(s) 280
PstNI CAGNNNCTG 1 cut(s) 1028
PsuI RGATCY 1 cut(s) 1016
PsyI GACNNNGTC 1 cut(s) 862
RsaI GTAC 3 cut(s) 754, 1304, 1316
RsaNI GTAC 3 cut(s) 753, 1303, 1315
RseI CAYNNNNRTG 2 cut(s) 85, 1576
SaqAI TTAA 3 cut(s) 372, 473, 1365
SatI GCNGC 3 cut(s) 6, 1170, 1442
Sau3AI GATC 6 cut(s) 207, 561, 643, 672, 1016, 1374
Sau96I GGNCC 4 cut(s) 728, 1157, 1158, 1337
ScaI AGTACT 1 cut(s) 1304
SchI GAGTC 3 cut(s) 513, 893, 961
ScrFI CCNGG 3 cut(s) 54, 994, 1155
SduI GDGCHC 6 cut(s) 163, 403, 784, 823, 999, 1161
SfaNI GCATC 2 cut(s) 120, 823
SfcI CTRYAG 3 cut(s) 276, 360, 1029
SfuI TTCGAA 1 cut(s) 1249
SinI GGWCC 1 cut(s) 1337
SmiMI CAYNNNNRTG 2 cut(s) 85, 1576
SmlI CTYRAG 1 cut(s) 351
SmoI CTYRAG 1 cut(s) 351
SpeI ACTAGT 1 cut(s) 505
Sse9I AATT 4 cut(s) 368, 390, 486, 1127
SsiI CCGC 3 cut(s) 385, 708, 1409
SspMI CTAG 5 cut(s) 156, 267, 333, 506, 921
StyD4I CCNGG 3 cut(s) 52, 992, 1153
StyI CCWWGG 4 cut(s) 86, 106, 201, 785
TaaI ACNGT 7 cut(s) 316, 703, 761, 1009, 1302, 1331, 1462
TaiI ACGT 2 cut(s) 302, 1063
TaqI TCGA 2 cut(s) 1072, 1249
TasI AATT 4 cut(s) 368, 390, 486, 1127
TatI WGTACW 2 cut(s) 1302, 1314
TfiI GAWTC 4 cut(s) 347, 722, 982, 1517
Tru1I TTAA 3 cut(s) 372, 473, 1365
Tru9I TTAA 3 cut(s) 372, 473, 1365
TscAI CASTG 6 cut(s) 285, 349, 448, 706, 895, 939
TseFI GTSAC 1 cut(s) 1009
TseI GCWGC 3 cut(s) 5, 1169, 1441
Tsp45I GTSAC 1 cut(s) 1009
TspDTI ATGAA 5 cut(s) 889, 1090, 1249, 1270, 1530
TspGWI ACGGA 1 cut(s) 789
TspRI CASTG 6 cut(s) 285, 349, 448, 706, 895, 939
Tth111I GACNNNGTC 1 cut(s) 862
VpaK11BI GGWCC 1 cut(s) 1337
XapI RAATTY 2 cut(s) 368, 1127
XceI RCATGY 1 cut(s) 638
XcmI CCANNNNNNNNNTGG 1 cut(s) 179
XmiI GTMKAC 1 cut(s) 1480
XspI CTAG 5 cut(s) 156, 267, 333, 506, 921
ZrmI AGTACT 1 cut(s) 1304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.