BONZAI 1-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G07300 AT5G61900 AT5G61900 |
| fragaria_vesca | FvH4_5g09500 FvH4_5g09500 FvH4_5g09500 |
| malus_domestica | MD06G1130500.v1.1 MD14G1147300.v1.1 |
| prunus_persica | Prupe.5G141800_v2.0.a1 Prupe.5G141800_v2.0.a1 Prupe.5G141800_v2.0.a1 Prupe.5G141800_v2.0.a1 Prupe.5G141800_v2.0.a1 Prupe.5G141800_v2.0.a1 |
| pyrus_communis | pycom06g12230 pycom14g12200 |
| rosa_chinensis | RchiOBHm_Chr7g0188701 |
| rosa_laevigata | RLG00000004668 |
| rosa_roxburghii | Rroxscaffold_3G00266120 |
| rosa_rugosa | Rorug06G0492400 Rorug06G0492500 Rorug06G0492600 |
| rosa_samantha | Rh7CG100900 |
| rosa_wichuraiana | Rw7G008420 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 3 cut(s) | 532, 712, 1290 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1007 |
| AciI | CCGC | 2 cut(s) | 52, 464 |
| AclWI | GGATC | 6 cut(s) | 98, 288, 426, 482, 884, 1497 |
| AcoI | YGGCCR | 1 cut(s) | 49 |
| AcsI | RAATTY | 5 cut(s) | 70, 691, 817, 1443, 1522 |
| AcuI | CTGAAG | 3 cut(s) | 78, 755, 879 |
| AcvI | CACGTG | 1 cut(s) | 1397 |
| AdeI | CACNNNGTG | 1 cut(s) | 178 |
| AfaI | GTAC | 3 cut(s) | 129, 1375, 1431 |
| AfeI | AGCGCT | 1 cut(s) | 971 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 445, 983, 1007 |
| AflII | CTTAAG | 1 cut(s) | 194 |
| AflIII | ACRYGT | 1 cut(s) | 780 |
| AhlI | ACTAGT | 1 cut(s) | 674 |
| AjnI | CCWGG | 3 cut(s) | 276, 657, 980 |
| AluBI | AGCT | 8 cut(s) | 46, 199, 337, 366, 638, 667, 845, 1319 |
| AluI | AGCT | 8 cut(s) | 46, 199, 337, 366, 638, 667, 845, 1319 |
| Alw26I | GTCTC | 1 cut(s) | 1182 |
| AlwI | GGATC | 6 cut(s) | 98, 288, 426, 482, 884, 1497 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1489 |
| Aor51HI | AGCGCT | 1 cut(s) | 971 |
| AoxI | GGCC | 1 cut(s) | 49 |
| ApeKI | GCWGC | 1 cut(s) | 1157 |
| ApoI | RAATTY | 5 cut(s) | 70, 691, 817, 1443, 1522 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 486, 518 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 63, 666 |
| AspLEI | GCGC | 2 cut(s) | 972, 1462 |
| AspS9I | GGNCC | 3 cut(s) | 1010, 1124, 1139 |
| AsuHPI | GGTGA | 2 cut(s) | 710, 1370 |
| AvaII | GGWCC | 3 cut(s) | 1010, 1124, 1139 |
| BaeGI | GKGCMC | 1 cut(s) | 1102 |
| BanII | GRGCYC | 1 cut(s) | 997 |
| BauI | CACGAG | 1 cut(s) | 1265 |
| BbrPI | CACGTG | 1 cut(s) | 1397 |
| BbvCI | CCTCAGC | 1 cut(s) | 351 |
| BbvI | GCAGC | 1 cut(s) | 1144 |
| BccI | CCATC | 4 cut(s) | 23, 1001, 1220, 1486 |
| BciT130I | CCWGG | 3 cut(s) | 278, 659, 982 |
| BclI | TGATCA | 1 cut(s) | 715 |
| BcoDI | GTCTC | 1 cut(s) | 1182 |
| BcuI | ACTAGT | 1 cut(s) | 674 |
| BfaI | CTAG | 2 cut(s) | 200, 675 |
| BfoI | RGCGCY | 2 cut(s) | 973, 1463 |
| BfrI | CTTAAG | 1 cut(s) | 194 |
| BfuAI | ACCTGC | 3 cut(s) | 532, 712, 1290 |
| BglII | AGATCT | 1 cut(s) | 1240 |
| BisI | GCNGC | 2 cut(s) | 52, 1158 |
| BlsI | GCNGC | 2 cut(s) | 53, 1159 |
| Bme1390I | CCNGG | 3 cut(s) | 278, 659, 982 |
| Bme18I | GGWCC | 3 cut(s) | 1010, 1124, 1139 |
| BmgT120I | GGNCC | 3 cut(s) | 1010, 1124, 1139 |
| BmiI | GGNNCC | 3 cut(s) | 857, 994, 1141 |
| BmrFI | CCNGG | 3 cut(s) | 278, 659, 982 |
| BmrI | ACTGGG | 1 cut(s) | 1389 |
| BmsI | GCATC | 5 cut(s) | 180, 1169, 1249, 1283, 1336 |
| BmuI | ACTGGG | 1 cut(s) | 1389 |
| Bpu10I | CCTNAGC | 1 cut(s) | 351 |
| BsaAI | YACGTR | 1 cut(s) | 1397 |
| BsaJI | CCNNGG | 4 cut(s) | 276, 328, 981, 1072 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 24, 54 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 445, 983, 1007 |
| Bse1I | ACTGG | 5 cut(s) | 485, 654, 1013, 1174, 1384 |
| Bse3DI | GCAATG | 1 cut(s) | 1021 |
| BseBI | CCWGG | 3 cut(s) | 278, 659, 982 |
| BseDI | CCNNGG | 4 cut(s) | 276, 328, 981, 1072 |
| BseGI | GGATG | 2 cut(s) | 1231, 1351 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 445, 983, 1007 |
| BseMI | GCAATG | 1 cut(s) | 1021 |
| BseMII | CTCAG | 4 cut(s) | 179, 342, 756, 1496 |
| BseNI | ACTGG | 5 cut(s) | 485, 654, 1013, 1174, 1384 |
| BseRI | GAGGAG | 2 cut(s) | 368, 1329 |
| BseSI | GKGCMC | 1 cut(s) | 1102 |
| BseXI | GCAGC | 1 cut(s) | 1144 |
| BseYI | CCCAGC | 2 cut(s) | 707, 800 |
| BsgI | GTGCAG | 1 cut(s) | 1427 |
| BshFI | GGCC | 1 cut(s) | 51 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 445, 983, 1007 |
| BsmAI | GTCTC | 1 cut(s) | 1182 |
| BsnI | GGCC | 1 cut(s) | 51 |
| Bsp1286I | GDGCHC | 2 cut(s) | 997, 1102 |
| Bsp1407I | TGTACA | 1 cut(s) | 1429 |
| Bsp143I | GATC | 9 cut(s) | 90, 280, 308, 418, 474, 715, 889, 1240, 1502 |
| BspACI | CCGC | 2 cut(s) | 52, 464 |
| BspANI | GGCC | 1 cut(s) | 51 |
| BspCNI | CTCAG | 4 cut(s) | 178, 343, 757, 1495 |
| BspLI | GGNNCC | 3 cut(s) | 857, 994, 1141 |
| BspMI | ACCTGC | 3 cut(s) | 532, 712, 1290 |
| BspPI | GGATC | 6 cut(s) | 98, 288, 426, 482, 884, 1497 |
| BspTI | CTTAAG | 1 cut(s) | 194 |
| BsrDI | GCAATG | 1 cut(s) | 1021 |
| BsrGI | TGTACA | 1 cut(s) | 1429 |
| BsrI | ACTGG | 5 cut(s) | 485, 654, 1013, 1174, 1384 |
| BssECI | CCNNGG | 4 cut(s) | 276, 328, 981, 1072 |
| BssMI | GATC | 9 cut(s) | 90, 280, 308, 418, 474, 715, 889, 1240, 1502 |
| BssSI | CACGAG | 1 cut(s) | 1265 |
| BssT1I | CCWWGG | 1 cut(s) | 1072 |
| Bst2BI | CACGAG | 1 cut(s) | 1265 |
| Bst2UI | CCWGG | 3 cut(s) | 278, 659, 982 |
| Bst4CI | ACNGT | 3 cut(s) | 317, 329, 1055 |
| Bst6I | CTCTTC | 3 cut(s) | 19, 428, 731 |
| BstAFI | CTTAAG | 1 cut(s) | 194 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 233, 1166 |
| BstAUI | TGTACA | 1 cut(s) | 1429 |
| BstBAI | YACGTR | 1 cut(s) | 1397 |
| BstC8I | GCNNGC | 3 cut(s) | 348, 866, 1171 |
| BstDEI | CTNAG | 4 cut(s) | 165, 351, 765, 1482 |
| BstDSI | CCRYGG | 1 cut(s) | 328 |
| BstF5I | GGATG | 2 cut(s) | 1231, 1351 |
| BstH2I | RGCGCY | 2 cut(s) | 973, 1463 |
| BstHHI | GCGC | 2 cut(s) | 972, 1462 |
| BstKTI | GATC | 9 cut(s) | 93, 283, 311, 421, 477, 718, 892, 1243, 1505 |
| BstMAI | GTCTC | 1 cut(s) | 1182 |
| BstMBI | GATC | 9 cut(s) | 90, 280, 308, 418, 474, 715, 889, 1240, 1502 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 43, 205, 233, 343, 573, 1166, 1466 |
| BstNI | CCWGG | 3 cut(s) | 278, 659, 982 |
| BstNSI | RCATGY | 2 cut(s) | 350, 1501 |
| BstSCI | CCNGG | 3 cut(s) | 276, 657, 980 |
| BstSLI | GKGCMC | 1 cut(s) | 1102 |
| BstV1I | GCAGC | 1 cut(s) | 1144 |
| BstX2I | RGATCY | 4 cut(s) | 280, 418, 889, 1240 |
| BstYI | RGATCY | 4 cut(s) | 280, 418, 889, 1240 |
| BsuRI | GGCC | 1 cut(s) | 51 |
| BtgI | CCRYGG | 1 cut(s) | 328 |
| BtsCI | GGATG | 2 cut(s) | 1231, 1351 |
| BtsIMutI | CAGTG | 4 cut(s) | 54, 647, 731, 1051 |
| BveI | ACCTGC | 3 cut(s) | 532, 712, 1290 |
| Cac8I | GCNNGC | 3 cut(s) | 348, 866, 1171 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1489 |
| CfoI | GCGC | 2 cut(s) | 972, 1462 |
| Cfr13I | GGNCC | 3 cut(s) | 1010, 1124, 1139 |
| Csp6I | GTAC | 3 cut(s) | 128, 1374, 1430 |
| CviAII | CATG | 6 cut(s) | 347, 528, 620, 713, 823, 1498 |
| CviQI | GTAC | 3 cut(s) | 128, 1374, 1430 |
| DdeI | CTNAG | 4 cut(s) | 165, 351, 765, 1482 |
| DpnI | GATC | 9 cut(s) | 92, 282, 310, 420, 476, 717, 891, 1242, 1504 |
| DpnII | GATC | 9 cut(s) | 90, 280, 308, 418, 474, 715, 889, 1240, 1502 |
| DraIII | CACNNNGTG | 1 cut(s) | 178 |
| EaeI | YGGCCR | 1 cut(s) | 49 |
| Eam1104I | CTCTTC | 3 cut(s) | 19, 428, 731 |
| EarI | CTCTTC | 3 cut(s) | 19, 428, 731 |
| Eco130I | CCWWGG | 1 cut(s) | 1072 |
| Eco24I | GRGCYC | 1 cut(s) | 997 |
| Eco47I | GGWCC | 3 cut(s) | 1010, 1124, 1139 |
| Eco47III | AGCGCT | 1 cut(s) | 971 |
| Eco57I | CTGAAG | 3 cut(s) | 78, 755, 879 |
| Eco72I | CACGTG | 1 cut(s) | 1397 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1124 |
| EcoRII | CCWGG | 3 cut(s) | 276, 657, 980 |
| EcoT14I | CCWWGG | 1 cut(s) | 1072 |
| EcoT22I | ATGCAT | 1 cut(s) | 913 |
| EcoT38I | GRGCYC | 1 cut(s) | 997 |
| ErhI | CCWWGG | 1 cut(s) | 1072 |
| FaeI | CATG | 6 cut(s) | 350, 531, 623, 716, 826, 1501 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 407, 439, 424, 456 |
| FatI | CATG | 6 cut(s) | 346, 527, 619, 712, 822, 1497 |
| FbaI | TGATCA | 1 cut(s) | 715 |
| Fnu4HI | GCNGC | 2 cut(s) | 52, 1158 |
| FokI | GGATG | 2 cut(s) | 1238, 1358 |
| FriOI | GRGCYC | 1 cut(s) | 997 |
| Fsp4HI | GCNGC | 2 cut(s) | 52, 1158 |
| FspBI | CTAG | 2 cut(s) | 200, 675 |
| GlaI | GCGC | 2 cut(s) | 971, 1461 |
| GluI | GCNGC | 2 cut(s) | 52, 1158 |
| GsaI | CCCAGC | 2 cut(s) | 711, 804 |
| HaeII | RGCGCY | 2 cut(s) | 973, 1463 |
| HaeIII | GGCC | 1 cut(s) | 51 |
| HhaI | GCGC | 2 cut(s) | 972, 1462 |
| Hin1II | CATG | 6 cut(s) | 350, 531, 623, 716, 826, 1501 |
| Hin6I | GCGC | 2 cut(s) | 970, 1460 |
| HinP1I | GCGC | 2 cut(s) | 970, 1460 |
| HincII | GTYRAC | 1 cut(s) | 743 |
| HindII | GTYRAC | 1 cut(s) | 743 |
| HindIII | AAGCTT | 1 cut(s) | 665 |
| HinfI | GANTC | 6 cut(s) | 299, 356, 739, 872, 959, 1068 |
| HphI | GGTGA | 2 cut(s) | 710, 1370 |
| Hpy166II | GTNNAC | 5 cut(s) | 680, 743, 754, 762, 1193 |
| Hpy188I | TCNGA | 7 cut(s) | 84, 244, 262, 964, 1279, 1424, 1491 |
| Hpy188III | TCNNGA | 3 cut(s) | 897, 1267, 1506 |
| Hpy8I | GTNNAC | 5 cut(s) | 680, 743, 754, 762, 1193 |
| HpyAV | CCTTC | 2 cut(s) | 903, 1058 |
| HpyCH4III | ACNGT | 3 cut(s) | 317, 329, 1055 |
| HpyCH4IV | ACGT | 2 cut(s) | 782, 1396 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 43, 205, 233, 343, 573, 1166, 1466 |
| HpyF3I | CTNAG | 4 cut(s) | 165, 351, 765, 1482 |
| HpySE526I | ACGT | 2 cut(s) | 782, 1396 |
| Hsp92II | CATG | 6 cut(s) | 350, 531, 623, 716, 826, 1501 |
| HspAI | GCGC | 2 cut(s) | 970, 1460 |
| Ksp22I | TGATCA | 1 cut(s) | 715 |
| Kzo9I | GATC | 9 cut(s) | 90, 280, 308, 418, 474, 715, 889, 1240, 1502 |
| LmnI | GCTCC | 2 cut(s) | 992, 1316 |
| Lsp1109I | GCAGC | 1 cut(s) | 1144 |
| LweI | GCATC | 5 cut(s) | 180, 1169, 1249, 1283, 1336 |
| MaeI | CTAG | 2 cut(s) | 200, 675 |
| MaeII | ACGT | 2 cut(s) | 782, 1396 |
| MaeIII | GTNAC | 4 cut(s) | 106, 434, 1234, 1358 |
| MalI | GATC | 9 cut(s) | 92, 282, 310, 420, 476, 717, 891, 1242, 1504 |
| MboI | GATC | 9 cut(s) | 90, 280, 308, 418, 474, 715, 889, 1240, 1502 |
| MboII | GAAGA | 5 cut(s) | 36, 199, 415, 748, 912 |
| MfeI | CAATTG | 2 cut(s) | 1002, 1164 |
| MflI | RGATCY | 4 cut(s) | 280, 418, 889, 1240 |
| MhlI | GDGCHC | 2 cut(s) | 997, 1102 |
| MlyI | GAGTC | 2 cut(s) | 365, 748 |
| MmeI | TCCRAC | 3 cut(s) | 222, 541, 1285 |
| Mph1103I | ATGCAT | 1 cut(s) | 913 |
| MroXI | GAANNNNTTC | 2 cut(s) | 63, 666 |
| MseI | TTAA | 7 cut(s) | 77, 195, 272, 597, 815, 1214, 1515 |
| MslI | CAYNNNNRTG | 2 cut(s) | 675, 1053 |
| MspCI | CTTAAG | 1 cut(s) | 194 |
| MspR9I | CCNGG | 3 cut(s) | 278, 659, 982 |
| MunI | CAATTG | 2 cut(s) | 1002, 1164 |
| MvaI | CCWGG | 3 cut(s) | 278, 659, 982 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 43, 205, 233, 343, 573, 1166, 1466 |
| NdeII | GATC | 9 cut(s) | 90, 280, 308, 418, 474, 715, 889, 1240, 1502 |
| NlaIII | CATG | 6 cut(s) | 350, 531, 623, 716, 826, 1501 |
| NlaIV | GGNNCC | 3 cut(s) | 857, 994, 1141 |
| NmuCI | GTSAC | 4 cut(s) | 106, 434, 1234, 1358 |
| NsiI | ATGCAT | 1 cut(s) | 913 |
| NspI | RCATGY | 2 cut(s) | 350, 1501 |
| PaeI | GCATGC | 1 cut(s) | 350 |
| PdmI | GAANNNNTTC | 2 cut(s) | 63, 666 |
| PfeI | GAWTC | 4 cut(s) | 299, 872, 959, 1068 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1007 |
| PkrI | GCNGC | 2 cut(s) | 53, 1159 |
| PleI | GAGTC | 2 cut(s) | 364, 747 |
| PmaCI | CACGTG | 1 cut(s) | 1397 |
| PmlI | CACGTG | 1 cut(s) | 1397 |
| PpsI | GAGTC | 2 cut(s) | 364, 747 |
| Ppu21I | YACGTR | 1 cut(s) | 1397 |
| PpuMI | RGGWCCY | 1 cut(s) | 1124 |
| Psp5II | RGGWCCY | 1 cut(s) | 1124 |
| Psp6I | CCWGG | 3 cut(s) | 276, 657, 980 |
| PspCI | CACGTG | 1 cut(s) | 1397 |
| PspFI | CCCAGC | 2 cut(s) | 707, 800 |
| PspGI | CCWGG | 3 cut(s) | 276, 657, 980 |
| PspN4I | GGNNCC | 3 cut(s) | 857, 994, 1141 |
| PspPI | GGNCC | 3 cut(s) | 1010, 1124, 1139 |
| PspPPI | RGGWCCY | 1 cut(s) | 1124 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1489 |
| PsuI | RGATCY | 4 cut(s) | 280, 418, 889, 1240 |
| RsaI | GTAC | 3 cut(s) | 129, 1375, 1431 |
| RsaNI | GTAC | 3 cut(s) | 128, 1374, 1430 |
| RseI | CAYNNNNRTG | 2 cut(s) | 675, 1053 |
| SaqAI | TTAA | 7 cut(s) | 77, 195, 272, 597, 815, 1214, 1515 |
| SatI | GCNGC | 2 cut(s) | 52, 1158 |
| Sau3AI | GATC | 9 cut(s) | 90, 280, 308, 418, 474, 715, 889, 1240, 1502 |
| Sau96I | GGNCC | 3 cut(s) | 1010, 1124, 1139 |
| SchI | GAGTC | 2 cut(s) | 365, 748 |
| ScrFI | CCNGG | 3 cut(s) | 278, 659, 982 |
| SduI | GDGCHC | 2 cut(s) | 997, 1102 |
| SfaNI | GCATC | 5 cut(s) | 180, 1169, 1249, 1283, 1336 |
| SinI | GGWCC | 3 cut(s) | 1010, 1124, 1139 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 675, 1053 |
| SmlI | CTYRAG | 1 cut(s) | 194 |
| SmoI | CTYRAG | 1 cut(s) | 194 |
| SpeI | ACTAGT | 1 cut(s) | 674 |
| SphI | GCATGC | 1 cut(s) | 350 |
| SsiI | CCGC | 2 cut(s) | 52, 464 |
| SspI | AATATT | 2 cut(s) | 550, 1513 |
| SspMI | CTAG | 2 cut(s) | 200, 675 |
| StyD4I | CCNGG | 3 cut(s) | 276, 657, 980 |
| StyI | CCWWGG | 1 cut(s) | 1072 |
| TaaI | ACNGT | 3 cut(s) | 317, 329, 1055 |
| TaiI | ACGT | 2 cut(s) | 785, 1399 |
| TaqI | TCGA | 3 cut(s) | 159, 302, 455 |
| TatI | WGTACW | 1 cut(s) | 1429 |
| TauI | GCSGC | 1 cut(s) | 54 |
| TfiI | GAWTC | 4 cut(s) | 299, 872, 959, 1068 |
| Tru1I | TTAA | 7 cut(s) | 77, 195, 272, 597, 815, 1214, 1515 |
| Tru9I | TTAA | 7 cut(s) | 77, 195, 272, 597, 815, 1214, 1515 |
| TscAI | CASTG | 4 cut(s) | 61, 654, 738, 1058 |
| TseFI | GTSAC | 4 cut(s) | 106, 434, 1234, 1358 |
| TseI | GCWGC | 1 cut(s) | 1157 |
| Tsp45I | GTSAC | 4 cut(s) | 106, 434, 1234, 1358 |
| TspDTI | ATGAA | 3 cut(s) | 63, 659, 811 |
| TspGWI | ACGGA | 2 cut(s) | 1238, 1438 |
| TspRI | CASTG | 4 cut(s) | 61, 654, 738, 1058 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1007 |
| Vha464I | CTTAAG | 1 cut(s) | 194 |
| VpaK11BI | GGWCC | 3 cut(s) | 1010, 1124, 1139 |
| XapI | RAATTY | 5 cut(s) | 70, 691, 817, 1443, 1522 |
| XceI | RCATGY | 2 cut(s) | 350, 1501 |
| XmnI | GAANNNNTTC | 2 cut(s) | 63, 666 |
| XspI | CTAG | 2 cut(s) | 200, 675 |
| Zsp2I | ATGCAT | 1 cut(s) | 913 |