Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0007922

Physical Location & Seq

Genomic Coordinates Reverse (-)

7669256 .. 7679324

Gene Structure 10069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G008420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2904 bp

ATGAACTGTGGAGGAAATGAGGACCTGGAATATCGAGCATCGGCTGTAGGTGACGTGAATGCAAATTATGTTACCGCTTTGCCCCCTATGAGTCGTTGGTATGGTCAGATTTCTGCTCCTGCCGATATCATAAGTAGAGATGGCGCAAAGGAACAAATGGTGTGCAACAACCAGATGAATTCAGAAGATTTTTCTGGTTATATTTTTATGTGTAATGGACGAACAAAACCAGAATGCTATATGTACCGAGTTTTCGGACTTCCTGCTGGAAGAAGGGAAGTTATTGAGAAGATTAAGCCAGGGATGAAGCTATTTCTGTTTGACTATGAGGTGAAGTATCTTTATGGGGTATACGAAGCAACCACTGCTGGAAAATTGAACTGGGACACAGCTGCTTTTGGTGGGAACTTCCCTGCACAGGTGAGATTCCATATCTACAAGGAATGTCTCCCTCTGCCAGAGAGTTGTTTCAAACATGCTATTCGAGATAACTACCAGACAGGCTCCAAAAAATTTAATCCAATTCTCAGTAGCCAACAAGTAAGTCATCTAGTATCAATGTTCAATCCTCTTACAAAGCCGTCATCTGCTAAATATGACCATTACCCTGTAAAGAATCAATTTCAATCCCATTCAAGGCTTGCTCCTCCAAGTTATCCATACTTTAACTTGATAAACACCAGTCATACTCCACAAGCGTCACTGCCTCCAAGCTATTCTTCCATGTATGGCAGACTTACTTCACCAGCCTTGGAGCCTCAGTGTACTCAAACGAGTGTCCTGCAGCCAGAACATGTTGGTTATGGATATGCACCACAGATGGGCTACATTAATCCTGCAGTGCAACAGCAAGCCAATTCAGCTCCATATCAGACATCTTATACTGTAGAAGCTGGGCAGCCGTACTTGCATGAAGTACCCAAATCATATGAAAGGTATGAGGCTGCTGCACAGGCTATGGTTCCTACTCATCAATACACTGACTGGAGATATGAGTACAATCAGTTACCGTCACAGACCCATATGCAGATGCAGGAGAATGCTGCTCAACACCAGAGTCTCTATCAAGTGCCTGCAGCCCATCATGTTACACAGCCTATACAACAACACGCATCGAGATTCGAAGAGCCTGGGCCTGCTAGCTGCTTCTTTCTTTTTTATTCCGGAATGGGAAACTGCTGCTCCGACGACGCCGGCGGCCAGACGGCCGTCGGCGGCACCGCCGCTTCTCACGGCAATCCCAACGACGCTCACAACGACGCCGTCGATCACCTCCTCAAGAGCCGCGGCTACCACGGCCTCTTCTCTCAGATCGAGTTATCCTTGGCTGCTGAAGACTTGCGTGATCGGGACGTGCTCTCCAAGAGTGATCCCATGGTGGTCGTATATACAAAAGGAAGAGATGGAGGGCTTGTAGAGCTTGGCCGCACTGAAGTAGTTCTAAATTCATTAAATCCAAAATGGATCACAAAGCATAATGTCACTTATCATTTTGAGGTCGTACAGACTTTGGTGTTTCGCGTGTATGATGTCGATACTCAGTTTCACAATGTGGAAGTGAAGATGCTTAAGCTAGATGAGCAACAATTTCTTGGCGAGGCAACTTGTGCATTGTCGGAGATAGTTGCAAAATCAGACAGATTATTAACCCTGGATCTTGTATATAGAGAGGAATCGAGCAGATCAAACCGTCATCAAAACCGTGGAAAGCTCATTGTGCATGCTGAGGAGTCTGTTAGCTCAAAGACAACGATTGAGATGAGTTTGAGGTGTTTAGATTTGGAATACAAGGATCTCTTCTCCAAAAGTGACCCTTTTTTGGTAATATCGAAAATTGCGGATAGTGGGATCACAATTCCAGTTTGCAAAACAGAAGTCATAAAGAACGAACTCAAACCTGCATGGAAGCCAATATATTTGAATATTCAACAAGTTGGAAGCAAGGACAGCCCCTTGATAATAGAGTGTTTTAACTTCAACAACAATGGCAAACATGATTTGATTGGAAAAGCTCAAAAATCACTGGCTGACCTGGAAAAGCTTCATACTAGTGGACAAGGAGAAAATTTATTTATACCTGCTGGGCATGATCACCACAACAAGACACTGAAGAGTCAACTATTTGTGGACAAGTTTACTGAGAGTGTTCAACACACGTTCCTTGATTACTTGGCTGGGGGCTGTGAATTAAATTTCATGGTGGCTGTTGATTTTACAGCTTCAAATGGGAACCCTCGCCTGCCCGATTCTTTGCATTATATAGATCCTTCAGGAAGAACCAATGCATACCAGAGAGCAATCATTGAGGTTGTGGAGGTGTTGCAGTTTTATGATTCAGACAAGCGCTTTCCAGCCTGGGGATTTGGAGCCCGACCAATTGATGGTCCAGTTTCTCATTGCTTCAACTTGAATGGGAGTAGTCATCACTGTGAGGTTGAAGGAATCCAAGGAATTATGGTGGCATATTCAAGTGCCCTCCAAAACGTTTCTCTTGCTGGACCCACTCTTTTTGGACCCATAATCACTACTGCTGCATCAATTGCCAGCCAGTCTCTTGCTAATGGTGGACAAAAATACTTCGTTTTGTTAATAATCACGGATGGAGTAGTCACAGATCTCCAAGAAACCAAAGATGCCCTTGTGAAAGCATCTGACCTGCCATTGTCAATCCTCATTGTTGGAGTAGGAGGAGCTGACTTCAAAGAAATGGAGATTTTGGATGCTGACAAGGGTGACAGGCTTGAAAGTACGACTGGGCGTGTTGCTTCACGTGATATAGTGCAGTTTGTACCATTCCGAGATGTACAAAGTGGAGAAATTTCCGTTGTTCAGGCGCTTTTAGCAGAATTACCATCTCAGTTTCTGACTTACATGCGATCCAGAAATATTAAACCAAATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005543 GO:0005544 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0008289 GO:0008361 GO:0009266 GO:0009270 GO:0009415 GO:0009506 GO:0009628 GO:0009987 GO:0010035 GO:0010941 GO:0016020 GO:0016043 GO:0030054 GO:0032535 GO:0042221 GO:0043167 GO:0043168 GO:0044464 GO:0045793 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0060548 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Copine Dev_Cell_Death

Protein Analysis

967

Amino Acids

107.62

Weight (kDa)

5.92

Isoelectric Point (pI)

39.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dev_Cell_Death	PF10539	66 - 188	3.6e-47	Development and cell death domain
C2	PF00168	443 - 545	3.6e-11	C2 domain
C2	PF00168	589 - 680	1.5e-10	C2 domain
Copine	PF07002	750 - 965	4.4e-82	Copine

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07300 AT5G61900 AT5G61900
fragaria_vesca	FvH4_5g09500 FvH4_5g09500 FvH4_5g09500
malus_domestica	MD06G1130500.v1.1 MD14G1147300.v1.1
prunus_persica	Prupe.5G141800_v2.0.a1 Prupe.5G141800_v2.0.a1 Prupe.5G141800_v2.0.a1 Prupe.5G141800_v2.0.a1 Prupe.5G141800_v2.0.a1 Prupe.5G141800_v2.0.a1
pyrus_communis	pycom06g12230 pycom14g12200
rosa_chinensis	RchiOBHm_Chr7g0188701
rosa_laevigata	RLG00000004668
rosa_roxburghii	Rroxscaffold_3G00266120
rosa_rugosa	Rorug06G0492400 Rorug06G0492500 Rorug06G0492600
rosa_samantha	Rh7CG100900
rosa_wichuraiana	Rw7G008420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	1906, 2086, 2664
AccB1I	GGYRCC	1 cut(s)	1217
AccB7I	CCANNNNNTGG	1 cut(s)	2381
AccI	GTMKAC	1 cut(s)	351
AccII	CGCG	2 cut(s)	1287, 1521
AccIII	TCCGGA	1 cut(s)	1163
AciI	CCGC	9 cut(s)	75, 1197, 1215, 1221, 1224, 1285, 1287, 1426, 1838
AclI	AACGTT	1 cut(s)	2484
AclWI	GGATC	7 cut(s)	1364, 1472, 1662, 1800, 1856, 2258, 2871
AcoI	YGGCCR	3 cut(s)	1198, 1206, 1423
AcsI	RAATTY	7 cut(s)	178, 512, 1444, 2065, 2191, 2817, 2896
AcuI	CTGAAG	4 cut(s)	1353, 1452, 2129, 2253
AcvI	CACGTG	1 cut(s)	2771
AcyI	GRCGYC	2 cut(s)	1191, 1260
AdeI	CACNNNGTG	1 cut(s)	1552
AfaI	GTAC	9 cut(s)	245, 766, 905, 918, 998, 1503, 2749, 2790, 2805
AfeI	AGCGCT	1 cut(s)	2345
AfiI	CCNNNNNNNGG	6 cut(s)	418, 636, 821, 1819, 2357, 2381
AflII	CTTAAG	1 cut(s)	1568
AflIII	ACRYGT	2 cut(s)	793, 2154
AhlI	ACTAGT	1 cut(s)	2048
AjiI	CACGTC	2 cut(s)	55, 1354
AjnI	CCWGG	6 cut(s)	24, 298, 1129, 1650, 2031, 2354
AjuI	GAANNNNNNNTTGG	2 cut(s)	703, 735
Alw21I	GWGCWC	1 cut(s)	1359
Alw26I	GTCTC	3 cut(s)	452, 1064, 2556
AlwI	GGATC	7 cut(s)	1364, 1472, 1662, 1800, 1856, 2258, 2871
AlwNI	CAGNNNCTG	1 cut(s)	2863
Aor13HI	TCCGGA	1 cut(s)	1163
Aor51HI	AGCGCT	1 cut(s)	2345
AoxI	GGCC	5 cut(s)	1133, 1198, 1206, 1297, 1423
ApoI	RAATTY	7 cut(s)	178, 512, 1444, 2065, 2191, 2817, 2896
ArsI	GACNNNNNNTTYG	2 cut(s)	1860, 1892
AseI	ATTAAT	1 cut(s)	831
Asp700I	GAANNNNTTC	2 cut(s)	1437, 2040
AspLEI	GCGC	3 cut(s)	146, 2346, 2836
AspS9I	GGNCC	5 cut(s)	22, 1133, 2384, 2498, 2513
AsuHPI	GGTGA	7 cut(s)	62, 343, 433, 735, 1262, 2084, 2744
AsuII	TTCGAA	1 cut(s)	1122
AsuNHI	GCTAGC	1 cut(s)	1139
AvaII	GGWCC	4 cut(s)	22, 2384, 2498, 2513
BaeGI	GKGCMC	1 cut(s)	2476
BanI	GGYRCC	1 cut(s)	1217
BanII	GRGCYC	1 cut(s)	2371
BbrPI	CACGTG	1 cut(s)	2771
BbsI	GAAGAC	1 cut(s)	1341
Bbv12I	GWGCWC	1 cut(s)	1359
BbvCI	CCTCAGC	1 cut(s)	1725
BccI	CCATC	7 cut(s)	134, 814, 1089, 1397, 2375, 2594, 2860
BceAI	ACGGC	7 cut(s)	565, 886, 1193, 1221, 1247, 1249, 1312
BcgI	CGANNNNNNTGC	2 cut(s)	763, 797
BciT130I	CCWGG	6 cut(s)	26, 300, 1131, 1652, 2033, 2356
BclI	TGATCA	1 cut(s)	2089
BcoDI	GTCTC	3 cut(s)	452, 1064, 2556
BcuI	ACTAGT	1 cut(s)	2048
BfaI	CTAG	4 cut(s)	551, 1140, 1574, 2049
BfmI	CTRYAG	5 cut(s)	45, 782, 837, 885, 1074
BfoI	RGCGCY	2 cut(s)	2347, 2837
BfrI	CTTAAG	1 cut(s)	1568
BfuAI	ACCTGC	3 cut(s)	1906, 2086, 2664
BglII	AGATCT	1 cut(s)	2614
Bme1390I	CCNGG	6 cut(s)	26, 300, 1131, 1652, 2033, 2356
Bme18I	GGWCC	4 cut(s)	22, 2384, 2498, 2513
BmgBI	CACGTC	2 cut(s)	55, 1354
BmgT120I	GGNCC	5 cut(s)	22, 1133, 2384, 2498, 2513
BmiI	GGNNCC	8 cut(s)	505, 756, 963, 1219, 2231, 2368, 2500, 2515
BmrFI	CCNGG	6 cut(s)	26, 300, 1131, 1652, 2033, 2356
BmrI	ACTGGG	2 cut(s)	391, 2763
BmsI	GCATC	8 cut(s)	47, 1020, 1121, 1554, 2543, 2623, 2657, 2710
BmtI	GCTAGC	1 cut(s)	1143
BmuI	ACTGGG	2 cut(s)	391, 2763
BoxI	GACNNNNGTC	1 cut(s)	1208
BpiI	GAAGAC	1 cut(s)	1341
BpmI	CTGGAG	1 cut(s)	1006
Bpu10I	CCTNAGC	1 cut(s)	1725
Bpu14I	TTCGAA	1 cut(s)	1122
BpuEI	CTTGAG	1 cut(s)	1262
BsaAI	YACGTR	1 cut(s)	2771
BsaHI	GRCGYC	2 cut(s)	1191, 1260
BsaWI	WCCGGW	1 cut(s)	1163
BsaXI	ACNNNNNCTCC	8 cut(s)	746, 776, 1166, 1196, 1343, 1373, 1398, 1428
Bsc4I	CCNNNNNNNGG	6 cut(s)	418, 636, 821, 1819, 2357, 2381
Bse118I	RCCGGY	1 cut(s)	1193
Bse1I	ACTGG	8 cut(s)	386, 681, 989, 1859, 2028, 2387, 2548, 2758
Bse3DI	GCAATG	1 cut(s)	2395
BseAI	TCCGGA	1 cut(s)	1163
BseBI	CCWGG	6 cut(s)	26, 300, 1131, 1652, 2033, 2356
BseGI	GGATG	3 cut(s)	309, 2605, 2725
BseLI	CCNNNNNNNGG	6 cut(s)	418, 636, 821, 1819, 2357, 2381
BseMI	GCAATG	1 cut(s)	2395
BseMII	CTCAG	7 cut(s)	541, 773, 1322, 1553, 1716, 2130, 2870
BseNI	ACTGG	8 cut(s)	386, 681, 989, 1859, 2028, 2387, 2548, 2758
BseRI	GAGGAG	4 cut(s)	636, 1265, 1742, 2703
BseSI	GKGCMC	1 cut(s)	2476
BseX3I	CGGCCG	1 cut(s)	1206
BseYI	CCCAGC	3 cut(s)	893, 2081, 2174
BsgI	GTGCAG	3 cut(s)	399, 933, 2801
Bsh1236I	CGCG	2 cut(s)	1287, 1521
Bsh1285I	CGRYCG	1 cut(s)	1209
BshFI	GGCC	5 cut(s)	1135, 1200, 1208, 1299, 1425
BshNI	GGYRCC	1 cut(s)	1217
BsiEI	CGRYCG	1 cut(s)	1209
BsiHKAI	GWGCWC	1 cut(s)	1359
BsiSI	CCGG	2 cut(s)	1164, 1194
BslFI	GGGAC	2 cut(s)	398, 1364
BslI	CCNNNNNNNGG	6 cut(s)	418, 636, 821, 1819, 2357, 2381
BsmAI	GTCTC	3 cut(s)	452, 1064, 2556
BsmFI	GGGAC	2 cut(s)	398, 1364
BsmI	GAATGC	3 cut(s)	64, 239, 1045
BsnI	GGCC	5 cut(s)	1135, 1200, 1208, 1299, 1425
Bsp119I	TTCGAA	1 cut(s)	1122
Bsp1286I	GDGCHC	3 cut(s)	1359, 2371, 2476
Bsp13I	TCCGGA	1 cut(s)	1163
Bsp1407I	TGTACA	1 cut(s)	2803
Bsp19I	CCATGG	1 cut(s)	1374
BspACI	CCGC	9 cut(s)	75, 1197, 1215, 1221, 1224, 1285, 1287, 1426, 1838
BspANI	GGCC	5 cut(s)	1135, 1200, 1208, 1299, 1425
BspCNI	CTCAG	7 cut(s)	540, 772, 1321, 1552, 1717, 2131, 2869
BspEI	TCCGGA	1 cut(s)	1163
BspFNI	CGCG	2 cut(s)	1287, 1521
BspLI	GGNNCC	8 cut(s)	505, 756, 963, 1219, 2231, 2368, 2500, 2515
BspMAI	CTGCAG	3 cut(s)	786, 841, 1078
BspMI	ACCTGC	3 cut(s)	1906, 2086, 2664
BspOI	GCTAGC	1 cut(s)	1143
BspPI	GGATC	7 cut(s)	1364, 1472, 1662, 1800, 1856, 2258, 2871
BspQI	GCTCTTC	1 cut(s)	1119
BspT104I	TTCGAA	1 cut(s)	1122
BspT107I	GGYRCC	1 cut(s)	1217
BspTI	CTTAAG	1 cut(s)	1568
BsrDI	GCAATG	1 cut(s)	2395
BsrFI	RCCGGY	1 cut(s)	1193
BsrGI	TGTACA	1 cut(s)	2803
BsrI	ACTGG	8 cut(s)	386, 681, 989, 1859, 2028, 2387, 2548, 2758
BssAI	RCCGGY	1 cut(s)	1193
BssNAI	GTATAC	1 cut(s)	352
BssNI	GRCGYC	2 cut(s)	1191, 1260
BssT1I	CCWWGG	4 cut(s)	750, 1323, 1374, 2446
Bst1107I	GTATAC	1 cut(s)	352
Bst2UI	CCWGG	6 cut(s)	26, 300, 1131, 1652, 2033, 2356
Bst4CI	ACNGT	6 cut(s)	8, 886, 1011, 1691, 1703, 2429
Bst6I	CTCTTC	5 cut(s)	1119, 1307, 1393, 1802, 2105
BstACI	GRCGYC	2 cut(s)	1191, 1260
BstAFI	CTTAAG	1 cut(s)	1568
BstAPI	GCANNNNNTGC	3 cut(s)	365, 1607, 2540
BstAUI	TGTACA	1 cut(s)	2803
BstBAI	YACGTR	1 cut(s)	2771
BstBI	TTCGAA	1 cut(s)	1122
BstC8I	GCNNGC	9 cut(s)	642, 852, 1074, 1137, 1141, 1195, 1722, 2240, 2545
BstDEI	CTNAG	7 cut(s)	527, 759, 1308, 1539, 1725, 2139, 2856
BstDSI	CCRYGG	4 cut(s)	1285, 1294, 1374, 1702
BstF5I	GGATG	3 cut(s)	309, 2605, 2725
BstFNI	CGCG	2 cut(s)	1287, 1521
BstH2I	RGCGCY	2 cut(s)	2347, 2837
BstHHI	GCGC	3 cut(s)	146, 2346, 2836
BstMAI	GTCTC	3 cut(s)	452, 1064, 2556
BstMCI	CGRYCG	1 cut(s)	1209
BstNI	CCWGG	6 cut(s)	26, 300, 1131, 1652, 2033, 2356
BstNSI	RCATGY	4 cut(s)	479, 797, 1724, 2875
BstPAI	GACNNNNGTC	1 cut(s)	1208
BstSCI	CCNGG	6 cut(s)	24, 298, 1129, 1650, 2031, 2354
BstSFI	CTRYAG	5 cut(s)	45, 782, 837, 885, 1074
BstSLI	GKGCMC	1 cut(s)	2476
BstUI	CGCG	2 cut(s)	1287, 1521
BstV2I	GAAGAC	1 cut(s)	1341
BstX2I	RGATCY	4 cut(s)	1654, 1792, 2263, 2614
BstYI	RGATCY	4 cut(s)	1654, 1792, 2263, 2614
BstZ17I	GTATAC	1 cut(s)	352
BstZI	CGGCCG	1 cut(s)	1206
BsuRI	GGCC	5 cut(s)	1135, 1200, 1208, 1299, 1425
BtgI	CCRYGG	4 cut(s)	1285, 1294, 1374, 1702
BtrI	CACGTC	2 cut(s)	55, 1354
BtsCI	GGATG	3 cut(s)	309, 2605, 2725
BtsI	GCAGTG	3 cut(s)	363, 701, 846
BtsIMutI	CAGTG	9 cut(s)	363, 701, 767, 846, 978, 1428, 2021, 2105, 2425
BveI	ACCTGC	3 cut(s)	1906, 2086, 2664
Cac8I	GCNNGC	9 cut(s)	642, 852, 1074, 1137, 1141, 1195, 1722, 2240, 2545
CaiI	CAGNNNCTG	1 cut(s)	2863
CfoI	GCGC	3 cut(s)	146, 2346, 2836
Cfr10I	RCCGGY	1 cut(s)	1193
Cfr13I	GGNCC	5 cut(s)	22, 1133, 2384, 2498, 2513
Cfr42I	CCGCGG	1 cut(s)	1288
CseI	GACGC	4 cut(s)	687, 1199, 1256, 1268
Csp6I	GTAC	9 cut(s)	244, 765, 904, 917, 997, 1502, 2748, 2789, 2804
CspCI	CAANNNNNGTGG	2 cut(s)	2491, 2526
CviQI	GTAC	9 cut(s)	244, 765, 904, 917, 997, 1502, 2748, 2789, 2804
DdeI	CTNAG	7 cut(s)	527, 759, 1308, 1539, 1725, 2139, 2856
DraIII	CACNNNGTG	1 cut(s)	1552
EaeI	YGGCCR	3 cut(s)	1198, 1206, 1423
EagI	CGGCCG	1 cut(s)	1206
Eam1104I	CTCTTC	5 cut(s)	1119, 1307, 1393, 1802, 2105
EarI	CTCTTC	5 cut(s)	1119, 1307, 1393, 1802, 2105
EclXI	CGGCCG	1 cut(s)	1206
Eco130I	CCWWGG	4 cut(s)	750, 1323, 1374, 2446
Eco24I	GRGCYC	1 cut(s)	2371
Eco32I	GATATC	1 cut(s)	127
Eco47I	GGWCC	4 cut(s)	22, 2384, 2498, 2513
Eco47III	AGCGCT	1 cut(s)	2345
Eco52I	CGGCCG	1 cut(s)	1206
Eco57I	CTGAAG	4 cut(s)	1353, 1452, 2129, 2253
Eco72I	CACGTG	1 cut(s)	2771
EcoO109I	RGGNCCY	1 cut(s)	22
EcoRI	GAATTC	1 cut(s)	178
EcoRII	CCWGG	6 cut(s)	24, 298, 1129, 1650, 2031, 2354
EcoRV	GATATC	1 cut(s)	127
EcoT14I	CCWWGG	4 cut(s)	750, 1323, 1374, 2446
EcoT22I	ATGCAT	1 cut(s)	2287
EcoT38I	GRGCYC	1 cut(s)	2371
ErhI	CCWWGG	4 cut(s)	750, 1323, 1374, 2446
FalI	AAGNNNNNCTT	8 cut(s)	703, 735, 1781, 1813, 1798, 1830, 2622, 2654
FaqI	GGGAC	2 cut(s)	398, 1364
FauNDI	CATATG	2 cut(s)	928, 1023
FbaI	TGATCA	1 cut(s)	2089
FblI	GTMKAC	1 cut(s)	351
FokI	GGATG	3 cut(s)	316, 2612, 2732
FriOI	GRGCYC	1 cut(s)	2371
FspBI	CTAG	4 cut(s)	551, 1140, 1574, 2049
GlaI	GCGC	3 cut(s)	145, 2345, 2835
GsaI	CCCAGC	3 cut(s)	897, 2085, 2178
GsuI	CTGGAG	1 cut(s)	1006
HaeII	RGCGCY	2 cut(s)	2347, 2837
HaeIII	GGCC	5 cut(s)	1135, 1200, 1208, 1299, 1425
HapII	CCGG	2 cut(s)	1164, 1194
HgaI	GACGC	4 cut(s)	687, 1199, 1256, 1268
HhaI	GCGC	3 cut(s)	146, 2346, 2836
Hin1I	GRCGYC	2 cut(s)	1191, 1260
Hin6I	GCGC	3 cut(s)	144, 2344, 2834
HinP1I	GCGC	3 cut(s)	144, 2344, 2834
HincII	GTYRAC	1 cut(s)	2117
HindII	GTYRAC	1 cut(s)	2117
HindIII	AAGCTT	1 cut(s)	2039
HpaII	CCGG	2 cut(s)	1164, 1194
HphI	GGTGA	7 cut(s)	62, 343, 433, 735, 1262, 2084, 2744
Hpy166II	GTNNAC	7 cut(s)	352, 765, 2054, 2117, 2128, 2136, 2567
Hpy188III	TCNNGA	7 cut(s)	485, 1116, 1164, 1279, 1349, 2271, 2880
Hpy8I	GTNNAC	7 cut(s)	352, 765, 2054, 2117, 2128, 2136, 2567
Hpy99I	CGWCG	6 cut(s)	1190, 1193, 1214, 1250, 1262, 1268
HpyAV	CCTTC	3 cut(s)	267, 2277, 2432
HpyCH4III	ACNGT	6 cut(s)	8, 886, 1011, 1691, 1703, 2429
HpyCH4IV	ACGT	5 cut(s)	54, 1353, 2156, 2484, 2770
HpyF3I	CTNAG	7 cut(s)	527, 759, 1308, 1539, 1725, 2139, 2856
HpySE526I	ACGT	5 cut(s)	54, 1353, 2156, 2484, 2770
Hsp92I	GRCGYC	2 cut(s)	1191, 1260
HspAI	GCGC	3 cut(s)	144, 2344, 2834
Kpn2I	TCCGGA	1 cut(s)	1163
KroI	GCCGGC	1 cut(s)	1193
KroNI	GCCGGC	1 cut(s)	1195
Ksp22I	TGATCA	1 cut(s)	2089
KspI	CCGCGG	1 cut(s)	1288
LguI	GCTCTTC	1 cut(s)	1119
LmnI	GCTCC	8 cut(s)	121, 509, 649, 754, 868, 1187, 2366, 2690
LweI	GCATC	8 cut(s)	47, 1020, 1121, 1554, 2543, 2623, 2657, 2710
MaeI	CTAG	4 cut(s)	551, 1140, 1574, 2049
MaeII	ACGT	5 cut(s)	54, 1353, 2156, 2484, 2770
MfeI	CAATTG	2 cut(s)	2376, 2538
MflI	RGATCY	4 cut(s)	1654, 1792, 2263, 2614
MhlI	GDGCHC	3 cut(s)	1359, 2371, 2476
MlyI	GAGTC	4 cut(s)	100, 1066, 1739, 2122
MmeI	TCCRAC	4 cut(s)	1209, 1596, 1915, 2659
Mph1103I	ATGCAT	1 cut(s)	2287
MreI	CGCCGGCG	1 cut(s)	1193
MroI	TCCGGA	1 cut(s)	1163
MroNI	GCCGGC	1 cut(s)	1193
MroXI	GAANNNNTTC	2 cut(s)	1437, 2040
MslI	CAYNNNNRTG	2 cut(s)	2049, 2427
MspA1I	CMGCKG	2 cut(s)	392, 1287
MspCI	CTTAAG	1 cut(s)	1568
MspI	CCGG	2 cut(s)	1164, 1194
MspR9I	CCNGG	6 cut(s)	26, 300, 1131, 1652, 2033, 2356
MunI	CAATTG	2 cut(s)	2376, 2538
Mva1269I	GAATGC	3 cut(s)	64, 239, 1045
MvaI	CCWGG	6 cut(s)	26, 300, 1131, 1652, 2033, 2356
MvnI	CGCG	2 cut(s)	1287, 1521
NaeI	GCCGGC	1 cut(s)	1195
NcoI	CCATGG	1 cut(s)	1374
NdeI	CATATG	2 cut(s)	928, 1023
NgoMIV	GCCGGC	1 cut(s)	1193
NheI	GCTAGC	1 cut(s)	1139
NlaIV	GGNNCC	8 cut(s)	505, 756, 963, 1219, 2231, 2368, 2500, 2515
NmuCI	GTSAC	7 cut(s)	50, 699, 1011, 1480, 1808, 2608, 2732
NsiI	ATGCAT	1 cut(s)	2287
NspI	RCATGY	4 cut(s)	479, 797, 1724, 2875
NspV	TTCGAA	1 cut(s)	1122
PaeI	GCATGC	1 cut(s)	1724
PciI	ACATGT	1 cut(s)	793
PciSI	GCTCTTC	1 cut(s)	1119
PcsI	WCGNNNNNNNCGW	2 cut(s)	1254, 1263
PctI	GAATGC	3 cut(s)	64, 239, 1045
PdiI	GCCGGC	1 cut(s)	1195
PdmI	GAANNNNTTC	2 cut(s)	1437, 2040
PfeI	GAWTC	7 cut(s)	426, 616, 1119, 1673, 2246, 2333, 2442
PflFI	GACNNNGTC	1 cut(s)	1262
PflMI	CCANNNNNTGG	1 cut(s)	2381
PleI	GAGTC	4 cut(s)	99, 1065, 1738, 2121
PmaCI	CACGTG	1 cut(s)	2771
PmlI	CACGTG	1 cut(s)	2771
PpsI	GAGTC	4 cut(s)	99, 1065, 1738, 2121
Ppu21I	YACGTR	1 cut(s)	2771
PpuMI	RGGWCCY	1 cut(s)	22
PscI	ACATGT	1 cut(s)	793
PshAI	GACNNNNGTC	1 cut(s)	1208
PshBI	ATTAAT	1 cut(s)	831
Psp1406I	AACGTT	1 cut(s)	2484
Psp5II	RGGWCCY	1 cut(s)	22
Psp6I	CCWGG	6 cut(s)	24, 298, 1129, 1650, 2031, 2354
PspCI	CACGTG	1 cut(s)	2771
PspFI	CCCAGC	3 cut(s)	893, 2081, 2174
PspGI	CCWGG	6 cut(s)	24, 298, 1129, 1650, 2031, 2354
PspN4I	GGNNCC	8 cut(s)	505, 756, 963, 1219, 2231, 2368, 2500, 2515
PspPI	GGNCC	5 cut(s)	22, 1133, 2384, 2498, 2513
PspPPI	RGGWCCY	1 cut(s)	22
PstI	CTGCAG	3 cut(s)	786, 841, 1078
PstNI	CAGNNNCTG	1 cut(s)	2863
PsuI	RGATCY	4 cut(s)	1654, 1792, 2263, 2614
PsyI	GACNNNGTC	1 cut(s)	1262
PvuII	CAGCTG	1 cut(s)	392
RsaI	GTAC	9 cut(s)	245, 766, 905, 918, 998, 1503, 2749, 2790, 2805
RsaNI	GTAC	9 cut(s)	244, 765, 904, 917, 997, 1502, 2748, 2789, 2804
RseI	CAYNNNNRTG	2 cut(s)	2049, 2427
SacII	CCGCGG	1 cut(s)	1288
SapI	GCTCTTC	1 cut(s)	1119
Sau96I	GGNCC	5 cut(s)	22, 1133, 2384, 2498, 2513
SchI	GAGTC	4 cut(s)	100, 1066, 1739, 2122
ScrFI	CCNGG	6 cut(s)	26, 300, 1131, 1652, 2033, 2356
SduI	GDGCHC	3 cut(s)	1359, 2371, 2476
SfaNI	GCATC	8 cut(s)	47, 1020, 1121, 1554, 2543, 2623, 2657, 2710
SfcI	CTRYAG	5 cut(s)	45, 782, 837, 885, 1074
Sfr303I	CCGCGG	1 cut(s)	1288
SfuI	TTCGAA	1 cut(s)	1122
SgrAI	CRCCGGYG	1 cut(s)	1193
SgrBI	CCGCGG	1 cut(s)	1288
SinI	GGWCC	4 cut(s)	22, 2384, 2498, 2513
SmiMI	CAYNNNNRTG	2 cut(s)	2049, 2427
SmlI	CTYRAG	2 cut(s)	1277, 1568
SmoI	CTYRAG	2 cut(s)	1277, 1568
SpeI	ACTAGT	1 cut(s)	2048
SphI	GCATGC	1 cut(s)	1724
SsiI	CCGC	9 cut(s)	75, 1197, 1215, 1221, 1224, 1285, 1287, 1426, 1838
SspI	AATATT	2 cut(s)	1924, 2887
SspMI	CTAG	4 cut(s)	551, 1140, 1574, 2049
StyD4I	CCNGG	6 cut(s)	24, 298, 1129, 1650, 2031, 2354
StyI	CCWWGG	4 cut(s)	750, 1323, 1374, 2446
TaaI	ACNGT	6 cut(s)	8, 886, 1011, 1691, 1703, 2429
TaiI	ACGT	5 cut(s)	57, 1356, 2159, 2487, 2773
TaqI	TCGA	9 cut(s)	34, 484, 1115, 1122, 1266, 1314, 1533, 1676, 1829
TatI	WGTACW	3 cut(s)	764, 996, 2803
TauI	GCSGC	6 cut(s)	1200, 1218, 1226, 1287, 1290, 1428
TfiI	GAWTC	7 cut(s)	426, 616, 1119, 1673, 2246, 2333, 2442
TscAI	CASTG	9 cut(s)	370, 708, 767, 846, 985, 1435, 2028, 2112, 2432
TseFI	GTSAC	7 cut(s)	50, 699, 1011, 1480, 1808, 2608, 2732
Tsp45I	GTSAC	7 cut(s)	50, 699, 1011, 1480, 1808, 2608, 2732
TspDTI	ATGAA	8 cut(s)	17, 191, 320, 927, 945, 1437, 2033, 2185
TspGWI	ACGGA	2 cut(s)	2612, 2812
TspRI	CASTG	9 cut(s)	370, 708, 767, 846, 985, 1435, 2028, 2112, 2432
Tth111I	GACNNNGTC	1 cut(s)	1262
Van91I	CCANNNNNTGG	1 cut(s)	2381
Vha464I	CTTAAG	1 cut(s)	1568
VpaK11BI	GGWCC	4 cut(s)	22, 2384, 2498, 2513
VspI	ATTAAT	1 cut(s)	831
XapI	RAATTY	7 cut(s)	178, 512, 1444, 2065, 2191, 2817, 2896
XceI	RCATGY	4 cut(s)	479, 797, 1724, 2875
XmiI	GTMKAC	1 cut(s)	351
XmnI	GAANNNNTTC	2 cut(s)	1437, 2040
XspI	CTAG	4 cut(s)	551, 1140, 1574, 2049
Zsp2I	ATGCAT	1 cut(s)	2287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.