Rw0G006050

Villin headpiece domain

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00235
Physical Location & Seq
Reverse (-)
47948 .. 52373
4426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G006050.1

Sequence Viewer

Length: 1905 bp
ATGTCTATCTATGCTAAAGATACAGATCCAGCATTCCAGGCTGCAGGAGCAAAGCTTGGCTTGGAAATTTGGTGTGTTGAGAACCAAAAATTGGTTTCTGTCCCGACACCTTCACATGGGAGATTCTATTCTGGGAGTGCATATCTAGTCCTGAGTACATTTCTGCCAAAAAGTGGCCTTCCTCAGCATGACATACACTATTGGACTGGAAAGAATGCAAATAAGGTGGACTCAGCGTTGGCATCAGATAAAGCACTTGAACTAGATGCAGCCCTTGGGTCCTGCACTGTGCAGTATATGGAAATTCAAGGCCAGGAAACTCGAAAGTTTTTGTCATATTTCAAACCCTGTATTATACCCATTGAAGGAGTATATGCATCACAGCAAGACCACATAAAAAGAGAAACATATAAAGTCACCTTGTTAGCTTGCAAAGGGGACCATGTTGTTCATGTTAAAGAAGTGCCTTTTTCTCGTTCATCGTTGAACCACAATGATGTATTCATACTTGATACTGCCTCAAAAATTTTCCTCTTTAGTGGGTGCAACTCTAGCATACAAGAAAGAGCAAAAGCTTTGGAGGTTGTCCAGTACATCAATGAGAATAAACATTGTGGAAACTGTGAGGTGGCAACTGTAGAGGATGGAAAATTGGTTGGCGATCCTGATGTGGGTGAATTCTGGAGCTTATTTGGTGGTTATGCTCCCATTCCCCAGGATTCACCTTCTCCTGTTCAGAAACAATCTGAAGCACCCTTTGTGAAACTTTCATGGATAATGACTCAGGGTAAATTAGGTCCATGCCAAACTGATTCATTAAGTAAAGAAATGCTTGAGACGGACAAATGCTATATGCTGGACTGTGATTCAGAAATTTTTGTTTGGATGGGAAGGCATACCTCAGTTACAGAAAGGAAAACATCAATCTCAGCTACAGAAGGATTCCTCAGAAACCAAGGCAGGTCAGCTGGTACTCATGTGACTTCCATAACTGAAGGGTTAGAAACTGCCAAGTTTAGGTCATATTTTGATAATTGGCCTCAAACAGTGGAGCTCAAGCTGTATGAAGAAGGTCGAGATAAAGTAGCAGCAATGTTCAAGCACCAAGGTTATGAAGTGAAAGAGCTTCCTGATGAAGAAGATATCCAGCCATTTATAGATTGCAGAGGCACATTGAAAGTTTGGTGGGTAGATGGTGATAGACTGTCCTTTGTTCCAGCCTCAGAACAAAGAAAGCTTTTCAGTGGGGATTGCTACATTCTGCAATATACATATCTCGGCAACGAAAGGGATGAGAATCTATTTTATGCATGGCTTGGTGGTGGGAGTGTAATGGAGGATAGAACAGATACTATCTGTCATATGAATGCCATAGTTGAGTCAAGCAGGGGGAATCCTGTTGTGGCTCAGATTAAGGAGAACAAGGAACCATCTCAATTTTTTTCAATTTTACAGACAGTAATTGTTTTTAAGGGAGGTAGGAGTCAACGATACAAGAAGTTTGTGGCAGAAAAGGGTATTGCAGATGAAACTTATGATGAAAGCAAGACAGCTCTTTTTCGTATTCAAGGGACAAGTCCTAACAACATGCAGGCCATCCAAGTTGATACAGTTTCGGGCTCTTTGAACTCTTCCTATTGTTACATCCTGCAAACTGGTACATCTGTTGTCACTTGGATTGGGAATCTCTCATCGAGCAGAGATCATGATCTTCTTGACAGAATGCTGGAGCTAATAAATCCAACATGGCAAGCCATATCAGTCAGGGAAGGGAGTGAATCTGATGTTTTCTGGAGTGCACTTGGTGATAAGACAGAGTATGCAAGAGGAAAAGAAATAAAAGGATACATAGATGATCCACATTTATTTATGTTGAGCGGAATTGAAGGTAACAAAAATTTCTAG

Protein Analysis

634

Amino Acids

71.09

Weight (kDa)

5.31

Isoelectric Point (pI)

39.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gelsolin PF00626 29 - 111 4.9e-10 Gelsolin repeat
Gelsolin PF00626 149 - 217 3.9e-12 Gelsolin repeat
Gelsolin PF00626 271 - 339 6e-08 Gelsolin repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 951
AccB7I CCANNNNNTGG 2 cut(s) 91, 173
AccBSI CCGCTC 1 cut(s) 1878
AciI CCGC 1 cut(s) 1878
AclWI GGATC 3 cut(s) 20, 656, 1850
AcsI RAATTY 6 cut(s) 66, 303, 525, 677, 873, 1897
AcuI CTGAAG 2 cut(s) 768, 1014
AdeI CACNNNGTG 1 cut(s) 1805
AfaI GTAC 4 cut(s) 157, 593, 973, 1660
AfiI CCNNNNNNNGG 6 cut(s) 91, 116, 173, 365, 671, 1017
AjnI CCWGG 3 cut(s) 36, 312, 714
AjuI GAANNNNNNNTTGG 2 cut(s) 74, 106
Alw21I GWGCWC 2 cut(s) 1056, 1801
Alw26I GTCTC 1 cut(s) 830
Alw44I GTGCAC 1 cut(s) 1797
AlwI GGATC 3 cut(s) 20, 656, 1850
AoxI GGCC 4 cut(s) 175, 310, 1037, 1593
ApaLI GTGCAC 1 cut(s) 1797
ApeKI GCWGC 3 cut(s) 41, 269, 1088
ApoI RAATTY 6 cut(s) 66, 303, 525, 677, 873, 1897
AspS9I GGNCC 3 cut(s) 279, 439, 797
AsuHPI GGTGA 5 cut(s) 409, 686, 714, 1208, 1817
AvaII GGWCC 3 cut(s) 279, 439, 797
BaeGI GKGCMC 1 cut(s) 1801
BaeI ACNNNNGTAYC 4 cut(s) 963, 996, 1650, 1683
BanII GRGCYC 2 cut(s) 1056, 1622
Bbv12I GWGCWC 2 cut(s) 1056, 1801
BbvCI CCTCAGC 1 cut(s) 183
BbvI GCAGC 3 cut(s) 28, 281, 1100
BccI CCATC 5 cut(s) 638, 880, 1187, 1438, 1604
BciT130I CCWGG 3 cut(s) 38, 314, 716
BciVI GTATCC 1 cut(s) 1838
BcoDI GTCTC 1 cut(s) 830
BfaI CTAG 4 cut(s) 146, 263, 552, 1903
BfmI CTRYAG 3 cut(s) 42, 636, 933
BfuAI ACCTGC 1 cut(s) 951
BfuI GTATCC 1 cut(s) 1838
BisI GCNGC 3 cut(s) 42, 270, 1089
BlsI GCNGC 3 cut(s) 43, 271, 1090
Bme1390I CCNGG 3 cut(s) 38, 314, 716
Bme18I GGWCC 3 cut(s) 279, 439, 797
BmgT120I GGNCC 3 cut(s) 279, 439, 797
BmiI GGNNCC 3 cut(s) 280, 440, 1428
BmrFI CCNGG 3 cut(s) 38, 314, 716
BmsI GCATC 3 cut(s) 251, 256, 386
BpmI CTGGAG 3 cut(s) 703, 1748, 1813
Bpu10I CCTNAGC 1 cut(s) 183
BpuEI CTTGAG 2 cut(s) 854, 1040
BsaBI GATNNNNATC 3 cut(s) 24, 1296, 1707
BsaJI CCNNGG 4 cut(s) 274, 714, 955, 1105
Bsc4I CCNNNNNNNGG 6 cut(s) 91, 116, 173, 365, 671, 1017
Bse1I ACTGG 3 cut(s) 211, 589, 1660
Bse3DI GCAATG 1 cut(s) 1098
Bse8I GATNNNNATC 3 cut(s) 24, 1296, 1707
BseBI CCWGG 3 cut(s) 38, 314, 716
BseDI CCNNGG 4 cut(s) 274, 714, 955, 1105
BseGI GGATG 5 cut(s) 649, 891, 1297, 1596, 1644
BseJI GATNNNNATC 3 cut(s) 24, 1296, 1707
BseLI CCNNNNNNNGG 6 cut(s) 91, 116, 173, 365, 671, 1017
BseMI GCAATG 1 cut(s) 1098
BseMII CTCAG 9 cut(s) 143, 197, 246, 797, 915, 942, 961, 1236, 1421
BseNI ACTGG 3 cut(s) 211, 589, 1660
BseSI GKGCMC 1 cut(s) 1801
BseXI GCAGC 3 cut(s) 28, 281, 1100
BsgI GTGCAG 2 cut(s) 268, 311
BshFI GGCC 4 cut(s) 177, 312, 1039, 1595
BsiHKAI GWGCWC 2 cut(s) 1056, 1801
BslFI GGGAC 3 cut(s) 86, 452, 1585
BslI CCNNNNNNNGG 6 cut(s) 91, 116, 173, 365, 671, 1017
BsmAI GTCTC 1 cut(s) 830
BsmBI CGTCTC 1 cut(s) 830
BsmFI GGGAC 3 cut(s) 86, 452, 1585
BsmI GAATGC 4 cut(s) 32, 220, 1372, 1728
BsnI GGCC 4 cut(s) 177, 312, 1039, 1595
Bsp1286I GDGCHC 3 cut(s) 1056, 1622, 1801
Bsp143I GATC 5 cut(s) 25, 661, 1702, 1708, 1855
BspACI CCGC 1 cut(s) 1878
BspANI GGCC 4 cut(s) 177, 312, 1039, 1595
BspCNI CTCAG 9 cut(s) 144, 196, 245, 796, 914, 941, 960, 1235, 1420
BspHI TCATGA 1 cut(s) 1705
BspLI GGNNCC 3 cut(s) 280, 440, 1428
BspMAI CTGCAG 1 cut(s) 46
BspMI ACCTGC 1 cut(s) 951
BspPI GGATC 3 cut(s) 20, 656, 1850
BsrBI CCGCTC 1 cut(s) 1878
BsrDI GCAATG 1 cut(s) 1098
BsrI ACTGG 3 cut(s) 211, 589, 1660
BssECI CCNNGG 4 cut(s) 274, 714, 955, 1105
BssMI GATC 5 cut(s) 25, 661, 1702, 1708, 1855
BssT1I CCWWGG 3 cut(s) 274, 955, 1105
Bst2UI CCWGG 3 cut(s) 38, 314, 716
Bst4CI ACNGT 8 cut(s) 289, 623, 637, 863, 1048, 1206, 1459, 1612
Bst6I CTCTTC 1 cut(s) 1636
BstC8I GCNNGC 3 cut(s) 430, 1593, 1752
BstDEI CTNAG 9 cut(s) 152, 183, 232, 783, 901, 928, 947, 1222, 1407
BstF5I GGATG 5 cut(s) 649, 891, 1297, 1596, 1644
BstKTI GATC 5 cut(s) 28, 664, 1705, 1711, 1858
BstMAI GTCTC 1 cut(s) 830
BstMBI GATC 5 cut(s) 25, 661, 1702, 1708, 1855
BstMWI GCNNNNNNNGC 3 cut(s) 38, 47, 552
BstNI CCWGG 3 cut(s) 38, 314, 716
BstNSI RCATGY 1 cut(s) 1591
BstSCI CCNGG 3 cut(s) 36, 312, 714
BstSFI CTRYAG 3 cut(s) 42, 636, 933
BstSLI GKGCMC 1 cut(s) 1801
BstV1I GCAGC 3 cut(s) 28, 281, 1100
BstX2I RGATCY 1 cut(s) 25
BstYI RGATCY 1 cut(s) 25
BsuI GTATCC 1 cut(s) 1838
BsuRI GGCC 4 cut(s) 177, 312, 1039, 1595
BtsCI GGATG 5 cut(s) 649, 891, 1297, 1596, 1644
BtsIMutI CAGTG 3 cut(s) 285, 1053, 1249
BveI ACCTGC 1 cut(s) 951
Cac8I GCNNGC 3 cut(s) 430, 1593, 1752
CciI TCATGA 1 cut(s) 1705
Cfr13I GGNCC 3 cut(s) 279, 439, 797
Csp6I GTAC 4 cut(s) 156, 592, 972, 1659
CspCI CAANNNNNGTGG 2 cut(s) 207, 242
CviQI GTAC 4 cut(s) 156, 592, 972, 1659
DdeI CTNAG 9 cut(s) 152, 183, 232, 783, 901, 928, 947, 1222, 1407
DpnI GATC 5 cut(s) 27, 663, 1704, 1710, 1857
DpnII GATC 5 cut(s) 25, 661, 1702, 1708, 1855
DraIII CACNNNGTG 1 cut(s) 1805
Eam1104I CTCTTC 1 cut(s) 1636
EarI CTCTTC 1 cut(s) 1636
Ecl136II GAGCTC 1 cut(s) 1054
Eco130I CCWWGG 3 cut(s) 274, 955, 1105
Eco24I GRGCYC 2 cut(s) 1056, 1622
Eco32I GATATC 1 cut(s) 1144
Eco47I GGWCC 3 cut(s) 279, 439, 797
Eco53kI GAGCTC 1 cut(s) 1054
Eco57I CTGAAG 2 cut(s) 768, 1014
EcoICRI GAGCTC 1 cut(s) 1054
EcoO109I RGGNCCY 1 cut(s) 279
EcoRI GAATTC 1 cut(s) 677
EcoRII CCWGG 3 cut(s) 36, 312, 714
EcoRV GATATC 1 cut(s) 1144
EcoT14I CCWWGG 3 cut(s) 274, 955, 1105
EcoT22I ATGCAT 2 cut(s) 379, 1312
EcoT38I GRGCYC 2 cut(s) 1056, 1622
ErhI CCWWGG 3 cut(s) 274, 955, 1105
Esp3I CGTCTC 1 cut(s) 830
FalI AAGNNNNNCTT 4 cut(s) 44, 76, 816, 848
FaqI GGGAC 3 cut(s) 86, 452, 1585
FauNDI CATATG 1 cut(s) 1362
Fnu4HI GCNGC 3 cut(s) 42, 270, 1089
FokI GGATG 5 cut(s) 656, 898, 1304, 1583, 1631
FriOI GRGCYC 2 cut(s) 1056, 1622
Fsp4HI GCNGC 3 cut(s) 42, 270, 1089
FspBI CTAG 4 cut(s) 146, 263, 552, 1903
GluI GCNGC 3 cut(s) 42, 270, 1089
GsuI CTGGAG 3 cut(s) 703, 1748, 1813
HaeIII GGCC 4 cut(s) 177, 312, 1039, 1595
HincII GTYRAC 1 cut(s) 1487
HindII GTYRAC 1 cut(s) 1487
HindIII AAGCTT 3 cut(s) 53, 573, 1235
HphI GGTGA 5 cut(s) 409, 686, 714, 1208, 1817
Hpy166II GTNNAC 3 cut(s) 229, 1487, 1799
Hpy188I TCNGA 8 cut(s) 247, 738, 748, 871, 950, 1225, 1410, 1783
Hpy188III TCNNGA 9 cut(s) 103, 151, 665, 682, 1076, 1130, 1706, 1715, 1792
Hpy8I GTNNAC 3 cut(s) 229, 1487, 1799
HpyCH4III ACNGT 8 cut(s) 289, 623, 637, 863, 1048, 1206, 1459, 1612
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 47, 552
HpyF3I CTNAG 9 cut(s) 152, 183, 232, 783, 901, 928, 947, 1222, 1407
Kzo9I GATC 5 cut(s) 25, 661, 1702, 1708, 1855
LmnI GCTCC 5 cut(s) 47, 684, 709, 1051, 1729
Lsp1109I GCAGC 3 cut(s) 28, 281, 1100
LweI GCATC 3 cut(s) 251, 256, 386
MaeI CTAG 4 cut(s) 146, 263, 552, 1903
MaeIII GTNAC 6 cut(s) 415, 904, 979, 1640, 1669, 1889
MalI GATC 5 cut(s) 27, 663, 1704, 1710, 1857
MbiI CCGCTC 1 cut(s) 1878
MboI GATC 5 cut(s) 25, 661, 1702, 1708, 1855
MboII GAAGA 5 cut(s) 1079, 1148, 1151, 1623, 1703
MflI RGATCY 1 cut(s) 25
MhlI GDGCHC 3 cut(s) 1056, 1622, 1801
MlyI GAGTC 4 cut(s) 224, 775, 1388, 1492
MmeI TCCRAC 1 cut(s) 1766
Mph1103I ATGCAT 2 cut(s) 379, 1312
MseI TTAA 4 cut(s) 456, 818, 1413, 1470
MslI CAYNNNNRTG 2 cut(s) 495, 1365
MspA1I CMGCKG 1 cut(s) 968
MspR9I CCNGG 3 cut(s) 38, 314, 716
Mva1269I GAATGC 4 cut(s) 32, 220, 1372, 1728
MvaI CCWGG 3 cut(s) 38, 314, 716
MwoI GCNNNNNNNGC 3 cut(s) 38, 47, 552
NdeI CATATG 1 cut(s) 1362
NdeII GATC 5 cut(s) 25, 661, 1702, 1708, 1855
NlaIV GGNNCC 3 cut(s) 280, 440, 1428
NmeAIII GCCGAG 1 cut(s) 1257
NmuCI GTSAC 3 cut(s) 415, 979, 1669
NsiI ATGCAT 2 cut(s) 379, 1312
NspI RCATGY 1 cut(s) 1591
PagI TCATGA 1 cut(s) 1705
PctI GAATGC 4 cut(s) 32, 220, 1372, 1728
PfeI GAWTC 9 cut(s) 123, 719, 812, 866, 942, 1297, 1393, 1684, 1778
PflMI CCANNNNNTGG 2 cut(s) 91, 173
PkrI GCNGC 3 cut(s) 43, 271, 1090
PleI GAGTC 4 cut(s) 224, 775, 1387, 1491
PpsI GAGTC 4 cut(s) 224, 775, 1387, 1491
PpuMI RGGWCCY 1 cut(s) 279
Psp124BI GAGCTC 1 cut(s) 1056
Psp5II RGGWCCY 1 cut(s) 279
Psp6I CCWGG 3 cut(s) 36, 312, 714
PspGI CCWGG 3 cut(s) 36, 312, 714
PspN4I GGNNCC 3 cut(s) 280, 440, 1428
PspPI GGNCC 3 cut(s) 279, 439, 797
PspPPI RGGWCCY 1 cut(s) 279
PstI CTGCAG 1 cut(s) 46
PsuI RGATCY 1 cut(s) 25
PvuII CAGCTG 1 cut(s) 968
RsaI GTAC 4 cut(s) 157, 593, 973, 1660
RsaNI GTAC 4 cut(s) 156, 592, 972, 1659
RseI CAYNNNNRTG 2 cut(s) 495, 1365
SacI GAGCTC 1 cut(s) 1056
SaqAI TTAA 4 cut(s) 456, 818, 1413, 1470
SatI GCNGC 3 cut(s) 42, 270, 1089
Sau3AI GATC 5 cut(s) 25, 661, 1702, 1708, 1855
Sau96I GGNCC 3 cut(s) 279, 439, 797
SchI GAGTC 4 cut(s) 224, 775, 1388, 1492
ScrFI CCNGG 3 cut(s) 38, 314, 716
SduI GDGCHC 3 cut(s) 1056, 1622, 1801
SfaNI GCATC 3 cut(s) 251, 256, 386
SfcI CTRYAG 3 cut(s) 42, 636, 933
SinI GGWCC 3 cut(s) 279, 439, 797
SmiMI CAYNNNNRTG 2 cut(s) 495, 1365
SmlI CTYRAG 2 cut(s) 833, 1055
SmoI CTYRAG 2 cut(s) 833, 1055
SsiI CCGC 1 cut(s) 1878
SspMI CTAG 4 cut(s) 146, 263, 552, 1903
SstI GAGCTC 1 cut(s) 1056
StyD4I CCNGG 3 cut(s) 36, 312, 714
StyI CCWWGG 3 cut(s) 274, 955, 1105
TaaI ACNGT 8 cut(s) 289, 623, 637, 863, 1048, 1206, 1459, 1612
TaqI TCGA 3 cut(s) 322, 1075, 1694
TatI WGTACW 2 cut(s) 155, 591
TfiI GAWTC 9 cut(s) 123, 719, 812, 866, 942, 1297, 1393, 1684, 1778
Tru1I TTAA 4 cut(s) 456, 818, 1413, 1470
Tru9I TTAA 4 cut(s) 456, 818, 1413, 1470
TscAI CASTG 3 cut(s) 292, 1053, 1249
TseFI GTSAC 3 cut(s) 415, 979, 1669
TseI GCWGC 3 cut(s) 41, 269, 1088
Tsp45I GTSAC 3 cut(s) 415, 979, 1669
TspGWI ACGGA 1 cut(s) 854
TspRI CASTG 3 cut(s) 292, 1053, 1249
Van91I CCANNNNNTGG 2 cut(s) 91, 173
VneI GTGCAC 1 cut(s) 1797
VpaK11BI GGWCC 3 cut(s) 279, 439, 797
XapI RAATTY 6 cut(s) 66, 303, 525, 677, 873, 1897
XceI RCATGY 1 cut(s) 1591
XspI CTAG 4 cut(s) 146, 263, 552, 1903
Zsp2I ATGCAT 2 cut(s) 379, 1312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.