Rw2G009470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0017217
Physical Location & Seq
Forward (+)
9567303 .. 9568046
744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G009470.1

Sequence Viewer

Length: 414 bp
ATGCCTCATTTAGGAGTCAAAAGCCTTCTTCTTGATTCAGGTCCTGCTGAGGCAAACAAGCTTGCTGGCTCTGCAACCATTTACAACCAGCCTCTTTGCCCTAAGCCTCGCAGAGTTGGCTCTGCCATACCTGAATTCCTCAAGCCTTTAAGATGTAACAAGCACAGCCAACAAAACTCAGATGAAAGAAGTGGAATTCTGAACATGATCAGTGAAAAGGATCTAATATTTGATGGAAGAGAACCTTTATGCGCCAAGTGTTCACCAACATGTTACTCAGGCTCTCCACCAGGAAGAACACCCAACCCTTTGGTTCATGATGTGCAGTTCATTCACCAAATGGAGCTTCTTTCACCATTTACCAGAACAAAGCTTTCGGATAAATTTGGATTCACATCTGCTTCTCCAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

14.98

Weight (kDa)

8.9

Isoelectric Point (pI)

51.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017217)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11180
malus_domestica MD02G1124300.v1.1 MD15G1238300.v1.1
prunus_persica Prupe.7G174100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0098471
rosa_laevigata RLG00000016802
rosa_roxburghii Rroxscaffold_2G00143930
rosa_rugosa Rorug02G0073500
rosa_samantha Rh2AG120800 Rh2BG123600 Rh2CG125200 Rh2DG125800
rosa_wichuraiana Rw2G009470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 228
AcsI RAATTY 3 cut(s) 134, 195, 383
AfiI CCNNNNNNNGG 1 cut(s) 11
AflIII ACRYGT 1 cut(s) 269
AjnI CCWGG 1 cut(s) 289
AjuI GAANNNNNNNTTGG 2 cut(s) 330, 362
AluBI AGCT 3 cut(s) 61, 346, 373
AluI AGCT 3 cut(s) 61, 346, 373
AlwI GGATC 1 cut(s) 228
AlwNI CAGNNNCTG 1 cut(s) 44
ApoI RAATTY 3 cut(s) 134, 195, 383
AspLEI GCGC 1 cut(s) 254
AspS9I GGNCC 1 cut(s) 41
AsuHPI GGTGA 3 cut(s) 255, 326, 345
AvaII GGWCC 1 cut(s) 41
BbvCI CCTCAGC 1 cut(s) 48
BccI CCATC 1 cut(s) 227
BciT130I CCWGG 1 cut(s) 291
BclI TGATCA 1 cut(s) 207
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 41
BmgT120I GGNCC 1 cut(s) 41
BmrFI CCNGG 1 cut(s) 291
BpmI CTGGAG 1 cut(s) 390
Bpu10I CCTNAGC 2 cut(s) 48, 102
BpuEI CTTGAG 1 cut(s) 125
BsaBI GATNNNNATC 1 cut(s) 394
Bsc4I CCNNNNNNNGG 1 cut(s) 11
Bse1I ACTGG 1 cut(s) 407
Bse8I GATNNNNATC 1 cut(s) 394
BseBI CCWGG 1 cut(s) 291
BseJI GATNNNNATC 1 cut(s) 394
BseLI CCNNNNNNNGG 1 cut(s) 11
BseMII CTCAG 3 cut(s) 39, 192, 291
BseNI ACTGG 1 cut(s) 407
BsgI GTGCAG 1 cut(s) 344
BslI CCNNNNNNNGG 1 cut(s) 11
Bsp143I GATC 2 cut(s) 207, 220
BspCNI CTCAG 3 cut(s) 40, 191, 290
BspHI TCATGA 1 cut(s) 316
BspPI GGATC 1 cut(s) 228
BsrI ACTGG 1 cut(s) 407
BssMI GATC 2 cut(s) 207, 220
Bst2UI CCWGG 1 cut(s) 291
Bst6I CTCTTC 1 cut(s) 232
BstC8I GCNNGC 2 cut(s) 63, 67
BstDEI CTNAG 4 cut(s) 48, 102, 178, 277
BstENI CCTNNNNNAGG 1 cut(s) 9
BstHHI GCGC 1 cut(s) 254
BstKTI GATC 2 cut(s) 210, 223
BstMBI GATC 2 cut(s) 207, 220
BstMWI GCNNNNNNNGC 2 cut(s) 71, 117
BstNI CCWGG 1 cut(s) 291
BstNSI RCATGY 1 cut(s) 273
BstSCI CCNGG 1 cut(s) 289
BstX2I RGATCY 1 cut(s) 220
BstXI CCANNNNNNTGG 1 cut(s) 310
BstYI RGATCY 1 cut(s) 220
BtsIMutI CAGTG 1 cut(s) 217
Cac8I GCNNGC 2 cut(s) 63, 67
CaiI CAGNNNCTG 1 cut(s) 44
CciI TCATGA 1 cut(s) 316
CfoI GCGC 1 cut(s) 254
Cfr13I GGNCC 1 cut(s) 41
CviAII CATG 3 cut(s) 205, 270, 317
DdeI CTNAG 4 cut(s) 48, 102, 178, 277
DpnI GATC 2 cut(s) 209, 222
DpnII GATC 2 cut(s) 207, 220
Eam1104I CTCTTC 1 cut(s) 232
EarI CTCTTC 1 cut(s) 232
Eco47I GGWCC 1 cut(s) 41
EcoNI CCTNNNNNAGG 1 cut(s) 9
EcoO109I RGGNCCY 1 cut(s) 41
EcoRI GAATTC 2 cut(s) 134, 195
EcoRII CCWGG 1 cut(s) 289
FaeI CATG 3 cut(s) 208, 273, 320
FaiI YATR 6 cut(s) 128, 206, 250, 271, 318, 412
FalI AAGNNNNNCTT 2 cut(s) 229, 261
FatI CATG 3 cut(s) 204, 269, 316
FbaI TGATCA 1 cut(s) 207
GlaI GCGC 1 cut(s) 253
GsuI CTGGAG 1 cut(s) 390
HhaI GCGC 1 cut(s) 254
Hin1II CATG 3 cut(s) 208, 273, 320
Hin6I GCGC 1 cut(s) 252
HinP1I GCGC 1 cut(s) 252
HindIII AAGCTT 2 cut(s) 59, 371
HinfI GANTC 3 cut(s) 15, 35, 390
HphI GGTGA 3 cut(s) 255, 326, 345
Hpy166II GTNNAC 1 cut(s) 263
Hpy188I TCNGA 3 cut(s) 181, 201, 379
Hpy188III TCNNGA 2 cut(s) 32, 317
Hpy8I GTNNAC 1 cut(s) 263
HpyAV CCTTC 1 cut(s) 35
HpyCH4V TGCA 2 cut(s) 74, 325
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 117
HpyF3I CTNAG 4 cut(s) 48, 102, 178, 277
Hsp92II CATG 3 cut(s) 208, 273, 320
HspAI GCGC 1 cut(s) 252
Ksp22I TGATCA 1 cut(s) 207
Kzo9I GATC 2 cut(s) 207, 220
LmnI GCTCC 1 cut(s) 343
LpnPI CCDG 9 cut(s) 24, 51, 57, 101, 144, 264, 276, 303, 376
MaeIII GTNAC 2 cut(s) 155, 272
MalI GATC 2 cut(s) 209, 222
MboI GATC 2 cut(s) 207, 220
MboII GAAGA 3 cut(s) 20, 249, 306
MflI RGATCY 1 cut(s) 220
MluCI AATT 3 cut(s) 134, 195, 383
MlyI GAGTC 1 cut(s) 24
MnlI CCTC 5 cut(s) 15, 43, 102, 117, 149
MseI TTAA 1 cut(s) 149
MslI CAYNNNNRTG 1 cut(s) 268
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 2 cut(s) 71, 117
NdeII GATC 2 cut(s) 207, 220
NlaIII CATG 3 cut(s) 208, 273, 320
NspI RCATGY 1 cut(s) 273
PagI TCATGA 1 cut(s) 316
PciI ACATGT 1 cut(s) 269
PfeI GAWTC 2 cut(s) 35, 390
PleI GAGTC 1 cut(s) 23
PpsI GAGTC 1 cut(s) 23
PpuMI RGGWCCY 1 cut(s) 41
PscI ACATGT 1 cut(s) 269
Psp5II RGGWCCY 1 cut(s) 41
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspPI GGNCC 1 cut(s) 41
PspPPI RGGWCCY 1 cut(s) 41
PstNI CAGNNNCTG 1 cut(s) 44
PsuI RGATCY 1 cut(s) 220
RseI CAYNNNNRTG 1 cut(s) 268
SaqAI TTAA 1 cut(s) 149
Sau3AI GATC 2 cut(s) 207, 220
Sau96I GGNCC 1 cut(s) 41
SchI GAGTC 1 cut(s) 24
ScrFI CCNGG 1 cut(s) 291
SetI ASST 6 cut(s) 43, 63, 133, 247, 348, 375
SinI GGWCC 1 cut(s) 41
SmiMI CAYNNNNRTG 1 cut(s) 268
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 3 cut(s) 134, 195, 383
SspI AATATT 1 cut(s) 228
StyD4I CCNGG 1 cut(s) 289
TasI AATT 3 cut(s) 134, 195, 383
TfiI GAWTC 2 cut(s) 35, 390
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TscAI CASTG 1 cut(s) 217
TspDTI ATGAA 4 cut(s) 17, 198, 305, 319
TspRI CASTG 1 cut(s) 217
VpaK11BI GGWCC 1 cut(s) 41
XagI CCTNNNNNAGG 1 cut(s) 9
XapI RAATTY 3 cut(s) 134, 195, 383
XceI RCATGY 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.