Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0009583

Physical Location & Seq

Genomic Coordinates Forward (+)

53980589 .. 53983892

Gene Structure 3304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G027490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2079 bp

ATGGCGAGTAGTGGTGGTGGCGGCGACGAAGACGCCGATGCGGTGCTCAGCGACGTAGAGGGCGACGATCCGGTGCCGATCGTGATTAAGAATTCGTCGCCGGAACAAATCTCCGCCGACCGGTTCCGCGAGCTCCTCGCCGAGCTAGATCGCGAGCGGCAGGCGCGGGAGGCGGTGGAGAATTCGAAATCGGACCTGCAAGTCCAGTTCGGGAGATTAAAGGCTCTGGCCCACGAGGCGATTAGGAAGCGAGACGAGTGGGGGAGGCAGAGAGACGAGGCCTTGCGTGAGAAGGAAGAACTGTCCAGAACGAACGAGAAGGTCTCAGCGGAATTGGCAGAAGCTAATAGAGCTAGAGACGAGGCTTTGCAGCAGAAGGATGAGATTGCGAAGCAGTTAGACGACGTCGTTAGGGAGAAGGATGGAATGAGGGCTGAGATTGGGAATTCCACGCATATGCTCATGTCTGGGATTGATAAGATTTCAGGTAAAGTTAGTAATTTCAAGAATTTCGCGGCGGGGGGATTGCCGAGGTCGAATAAGTACACCACCGGATTGCCGGCGGTGGCTTACGGGGTTATAAAGAGGACGAATGAGATTGTGGAAGAGCTTGTTAGACAAACTGAGGCCACTGCCAAGTCTAGGAACGAAACTAGGGAGCAGATGGATCAGAGGAATTATGAGATTGCCATTGAGATTTCGCAGCTGGAGGCCACCATTGGTGGTTTGAGAGAAGAGGTTGCGAAGAAGACGTCTGTGGTTGAGAGTTTGGAGATAAGTGTTGCAGAGAGGAGTGGGAAAATGTCGGAGATTGAGAGGGAGATGGAGGATAAATTGAGAAGGGCGGAGAGTGAGGCTGCCGAGTTGAGGCAGTTAGCTAGAGAGTATGATGATAAGTTGACGAATTTGGACTCGAAAATGGAAGAGCAGAGGCCTTTGCTCGTTGATCAGTTGAATTTGGTGTCGAAAATTCATGACCGGCTATATCATGTTATGAAAATAGTTGATGCCAACAATTTGGATCAGTCAGATTATTCGGAATCCCTGTTTCTCCCTCAAGAAACAGACATGGAGGAGAACCTGCGTGCATCTTTGGCTGGGATGGAATCTATTTATGAATTAACGAGGATTGTTATGGAAAAAGCAAGGGATTTGGTTGAGGAGAAGAATCATGAAATCAAGAGTTTGGATGAAACAGCGACTCGGTTAGTTAAAGAAAAGGAACAAATTGGATCCTTACTTAGGAGCGCTTTGTCAAATAGGATGACATCAAATCCATCTTCTAAGACAAGGGAATTGTTTCAAGTTGCAGAGAATGGTTTGAGGGAGGCTGGGATAGATTTTAAATTTAATAAGCATATGGGGGATCGGAAAGTGGATGCACTTGAGGCCGAGGAGGATGAAGTATACACATTAGCTGGTGCTTTGGAGAATATCGTTAAGGCATCTCAGCTGGAGATTATAGAGCTGCAGCATTCTGTGGAAGAACTAAGGGCAGAGCTGAGTTTACTTAAACAGCATGTAGAGGCCCAAGCTAAGGAGCTCGACCATAGAATGCATAAAATTGAGGAACTTGAAGAGAAGGAGAGACTAGCGAATGAAAGTATTGAAGGGCTAATGATGGACATTGCTGCTGCTGAAGAAGAAATTACAAGATGGAAAGTCGCAGCAGAGCAAGAAGCTGCTGCAGGCACAGGTGTAGAACAAGAGTTCGTGGCACAGTTATTGGCACTTAAGCAGGAACTTGAAGAGGCAAAGCAGGCAATTGTGGAGTCAGAGAAGAAGCTCAAGTTCAAAGAAGAGACAGCAGATGCTGCCATGGCAGCTAGAGATGCTGCGGAGAAATCCTTAAGATTGGCAGACTCGAGGGCATCCAGGCTCCGAGATAGAGTAGAGGAGCTTACCCGTCAACTTGAAGAATTTGAAAATCGGGAGGACTTAAGGAGAGGCCTGGGTGGACCTAGATATATATGTTGGCCCTGGCAGTGGCTTGGGCTGGACTTTGTAGGGTTCAGTCGCTCTGATACAGAACAACAGAGTAGTTCAAATGAAATGGAGCTTGCTGAACCTCTTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

692

Amino Acids

78.44

Weight (kDa)

4.82

Isoelectric Point (pI)

50.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24560
fragaria_vesca	FvH4_4g25380 FvH4_4g25380 FvH4_4g25380 FvH4_4g25380
malus_domestica	MD13G1104300.v1.1 MD16G1104400.v1.1
prunus_persica	Prupe.1G242200_v2.0.a1 Prupe.1G242200_v2.0.a1
pyrus_communis	pycom13g09050 pycom16g08870
rosa_chinensis	RchiOBHm_Chr4g0432671
rosa_laevigata	RLG00000006824
rosa_multiflora	Rmu_sc0009481.1_g000004
rosa_roxburghii	Rroxscaffold_5G00374130
rosa_rugosa	Rorug04G0261400 Rorug04G0261500
rosa_samantha	Rh4AG316000 Rh4BG324000 Rh4CG339000 Rh4DG319400
rosa_wichuraiana	Rw4G027490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	581
AasI	GACNNNNNNGTC	1 cut(s)	200
AatII	GACGTC	2 cut(s)	408, 755
Acc36I	ACCTGC	2 cut(s)	204, 1089
AccB1I	GGYRCC	1 cut(s)	73
AccBSI	CCGCTC	1 cut(s)	157
AccI	GTMKAC	1 cut(s)	1407
AccII	CGCG	4 cut(s)	129, 153, 166, 515
AclWI	GGATC	6 cut(s)	62, 675, 1029, 1227, 1240, 1374
AcsI	RAATTY	9 cut(s)	91, 181, 445, 508, 904, 955, 969, 1346, 1919
AcuI	CTGAAG	1 cut(s)	1659
AcyI	GRCGYC	3 cut(s)	33, 405, 752
AfaI	GTAC	1 cut(s)	545
AfeI	AGCGCT	1 cut(s)	1249
AfiI	CCNNNNNNNGG	6 cut(s)	120, 642, 867, 1242, 1537, 1986
AflII	CTTAAG	3 cut(s)	1733, 1849, 1939
AgeI	ACCGGT	1 cut(s)	120
AjnI	CCWGG	3 cut(s)	1874, 1950, 1979
Alw21I	GWGCWC	3 cut(s)	48, 135, 1545
Alw26I	GTCTC	6 cut(s)	246, 267, 328, 351, 1582, 1796
AlwI	GGATC	6 cut(s)	62, 675, 1029, 1227, 1240, 1374
AlwNI	CAGNNNCTG	1 cut(s)	1814
Ama87I	CYCGRG	1 cut(s)	1864
Aor51HI	AGCGCT	1 cut(s)	1249
AoxI	GGCC	9 cut(s)	228, 279, 627, 711, 932, 1389, 1527, 1948, 1976
ApoI	RAATTY	9 cut(s)	91, 181, 445, 508, 904, 955, 969, 1346, 1919
ArsI	GACNNNNNNTTYG	2 cut(s)	737, 769
AsiGI	ACCGGT	1 cut(s)	120
Asp700I	GAANNNNTTC	1 cut(s)	1299
AspLEI	GCGC	2 cut(s)	166, 1250
AspS9I	GGNCC	5 cut(s)	193, 229, 1528, 1958, 1977
AsuII	TTCGAA	1 cut(s)	185
AvaI	CYCGRG	1 cut(s)	1864
AvaII	GGWCC	2 cut(s)	193, 1958
BamHI	GGATCC	1 cut(s)	1232
BanI	GGYRCC	1 cut(s)	73
BanII	GRGCYC	2 cut(s)	135, 1545
BauI	CACGAG	1 cut(s)	233
BbsI	GAAGAC	2 cut(s)	36, 755
Bbv12I	GWGCWC	3 cut(s)	48, 135, 1545
BccI	CCATC	7 cut(s)	416, 658, 817, 1096, 1285, 1615, 1650
BciT130I	CCWGG	3 cut(s)	1876, 1952, 1981
BclI	TGATCA	1 cut(s)	946
BcoDI	GTCTC	6 cut(s)	246, 267, 328, 351, 1582, 1796
BfaI	CTAG	8 cut(s)	146, 354, 642, 654, 879, 1592, 1827, 1962
BfmI	CTRYAG	2 cut(s)	1469, 1686
BfoI	RGCGCY	1 cut(s)	1251
BfrI	CTTAAG	3 cut(s)	1733, 1849, 1939
BfuAI	ACCTGC	2 cut(s)	204, 1089
BglI	GCCNNNNNGGC	1 cut(s)	236
BlpI	GCTNAGC	1 cut(s)	47
Bme1390I	CCNGG	3 cut(s)	1876, 1952, 1981
Bme18I	GGWCC	2 cut(s)	193, 1958
BmeT110I	CYCGRG	1 cut(s)	1864
BmgT120I	GGNCC	5 cut(s)	193, 229, 1528, 1958, 1977
BmiI	GGNNCC	4 cut(s)	75, 125, 1234, 1880
BmrFI	CCNGG	3 cut(s)	1876, 1952, 1981
BmsI	GCATC	8 cut(s)	28, 997, 1097, 1369, 1454, 1801, 1822, 1880
BpiI	GAAGAC	2 cut(s)	36, 755
BplI	GAGNNNNNCTC	2 cut(s)	308, 340
BpmI	CTGGAG	2 cut(s)	728, 1475
Bpu10I	CCTNAGC	1 cut(s)	1536
Bpu1102I	GCTNAGC	1 cut(s)	47
Bpu14I	TTCGAA	1 cut(s)	185
BpuEI	CTTGAG	3 cut(s)	1041, 1406, 1772
BsaHI	GRCGYC	3 cut(s)	33, 405, 752
BsaI	GGTCTC	1 cut(s)	328
BsaJI	CCNNGG	5 cut(s)	530, 1392, 1818, 1951, 1979
BsaWI	WCCGGW	3 cut(s)	70, 120, 551
Bsc4I	CCNNNNNNNGG	6 cut(s)	120, 642, 867, 1242, 1537, 1986
Bse118I	RCCGGY	3 cut(s)	120, 559, 978
Bse1I	ACTGG	1 cut(s)	205
Bse3DI	GCAATG	1 cut(s)	1626
BseBI	CCWGG	3 cut(s)	1876, 1952, 1981
BseDI	CCNNGG	5 cut(s)	530, 1392, 1818, 1951, 1979
BseGI	GGATG	8 cut(s)	385, 427, 1107, 1195, 1269, 1384, 1405, 1871
BseLI	CCNNNNNNNGG	6 cut(s)	120, 642, 867, 1242, 1537, 1986
BseMI	GCAATG	1 cut(s)	1626
BseMII	CTCAG	6 cut(s)	61, 339, 426, 615, 1463, 1493
BseNI	ACTGG	1 cut(s)	205
BseRI	GAGGAG	6 cut(s)	125, 805, 1088, 1175, 1409, 1910
BseYI	CCCAGC	2 cut(s)	1097, 1331
Bsh1236I	CGCG	4 cut(s)	129, 153, 166, 515
Bsh1285I	CGRYCG	2 cut(s)	81, 121
BshFI	GGCC	9 cut(s)	230, 281, 629, 713, 934, 1391, 1529, 1950, 1978
BshNI	GGYRCC	1 cut(s)	73
BshTI	ACCGGT	1 cut(s)	120
BsiEI	CGRYCG	2 cut(s)	81, 121
BsiHKAI	GWGCWC	3 cut(s)	48, 135, 1545
BsiHKCI	CYCGRG	1 cut(s)	1864
BsiSI	CCGG	6 cut(s)	71, 101, 121, 552, 560, 979
BslI	CCNNNNNNNGG	6 cut(s)	120, 642, 867, 1242, 1537, 1986
BsmAI	GTCTC	6 cut(s)	246, 267, 328, 351, 1582, 1796
BsmBI	CGTCTC	3 cut(s)	246, 267, 351
BsmI	GAATGC	2 cut(s)	1474, 1560
BsnI	GGCC	9 cut(s)	230, 281, 629, 713, 934, 1391, 1529, 1950, 1978
Bso31I	GGTCTC	1 cut(s)	328
BsoBI	CYCGRG	1 cut(s)	1864
Bsp119I	TTCGAA	1 cut(s)	185
Bsp1286I	GDGCHC	3 cut(s)	48, 135, 1545
Bsp143I	GATC	8 cut(s)	67, 78, 148, 667, 946, 1021, 1232, 1366
Bsp1720I	GCTNAGC	1 cut(s)	47
Bsp19I	CCATGG	1 cut(s)	1818
Bsp68I	TCGCGA	1 cut(s)	153
BspANI	GGCC	9 cut(s)	230, 281, 629, 713, 934, 1391, 1529, 1950, 1978
BspCNI	CTCAG	6 cut(s)	60, 338, 427, 616, 1462, 1494
BspFNI	CGCG	4 cut(s)	129, 153, 166, 515
BspHI	TCATGA	2 cut(s)	973, 1171
BspLI	GGNNCC	4 cut(s)	75, 125, 1234, 1880
BspMAI	CTGCAG	2 cut(s)	1473, 1690
BspMI	ACCTGC	2 cut(s)	204, 1089
BspPI	GGATC	6 cut(s)	62, 675, 1029, 1227, 1240, 1374
BspQI	GCTCTTC	2 cut(s)	600, 918
BspT104I	TTCGAA	1 cut(s)	185
BspT107I	GGYRCC	1 cut(s)	73
BspTI	CTTAAG	3 cut(s)	1733, 1849, 1939
BspTNI	GGTCTC	1 cut(s)	328
BsrBI	CCGCTC	1 cut(s)	157
BsrDI	GCAATG	1 cut(s)	1626
BsrFI	RCCGGY	3 cut(s)	120, 559, 978
BsrI	ACTGG	1 cut(s)	205
BssAI	RCCGGY	3 cut(s)	120, 559, 978
BssECI	CCNNGG	5 cut(s)	530, 1392, 1818, 1951, 1979
BssMI	GATC	8 cut(s)	67, 78, 148, 667, 946, 1021, 1232, 1366
BssNAI	GTATAC	1 cut(s)	1408
BssNI	GRCGYC	3 cut(s)	33, 405, 752
BssSI	CACGAG	1 cut(s)	233
BssT1I	CCWWGG	1 cut(s)	1818
Bst1107I	GTATAC	1 cut(s)	1408
Bst2BI	CACGAG	1 cut(s)	233
Bst2UI	CCWGG	3 cut(s)	1876, 1952, 1981
Bst4CI	ACNGT	2 cut(s)	303, 1722
Bst6I	CTCTTC	6 cut(s)	600, 729, 918, 1572, 1743, 1794
BstACI	GRCGYC	3 cut(s)	33, 405, 752
BstAFI	CTTAAG	3 cut(s)	1733, 1849, 1939
BstAPI	GCANNNNNTGC	1 cut(s)	1814
BstBI	TTCGAA	1 cut(s)	185
BstC8I	GCNNGC	8 cut(s)	131, 155, 162, 561, 1086, 1690, 1761, 2061
BstDSI	CCRYGG	1 cut(s)	1818
BstENI	CCTNNNNNAGG	1 cut(s)	1240
BstF5I	GGATG	8 cut(s)	385, 427, 1107, 1195, 1269, 1384, 1405, 1871
BstFNI	CGCG	4 cut(s)	129, 153, 166, 515
BstH2I	RGCGCY	1 cut(s)	1251
BstHHI	GCGC	2 cut(s)	166, 1250
BstKTI	GATC	8 cut(s)	70, 81, 151, 670, 949, 1024, 1235, 1369
BstMAI	GTCTC	6 cut(s)	246, 267, 328, 351, 1582, 1796
BstMBI	GATC	8 cut(s)	67, 78, 148, 667, 946, 1021, 1232, 1366
BstMCI	CGRYCG	2 cut(s)	81, 121
BstNI	CCWGG	3 cut(s)	1876, 1952, 1981
BstNSI	RCATGY	1 cut(s)	1523
BstSCI	CCNGG	3 cut(s)	1874, 1950, 1979
BstSFI	CTRYAG	2 cut(s)	1469, 1686
BstUI	CGCG	4 cut(s)	129, 153, 166, 515
BstV2I	GAAGAC	2 cut(s)	36, 755
BstX2I	RGATCY	1 cut(s)	1232
BstXI	CCANNNNNNTGG	1 cut(s)	1018
BstYI	RGATCY	1 cut(s)	1232
BstZ17I	GTATAC	1 cut(s)	1408
BsuRI	GGCC	9 cut(s)	230, 281, 629, 713, 934, 1391, 1529, 1950, 1978
BtgI	CCRYGG	1 cut(s)	1818
BtsCI	GGATG	8 cut(s)	385, 427, 1107, 1195, 1269, 1384, 1405, 1871
BtsI	GCAGTG	2 cut(s)	630, 1991
BtsIMutI	CAGTG	2 cut(s)	630, 1991
BtuMI	TCGCGA	1 cut(s)	153
BveI	ACCTGC	2 cut(s)	204, 1089
Cac8I	GCNNGC	8 cut(s)	131, 155, 162, 561, 1086, 1690, 1761, 2061
CaiI	CAGNNNCTG	1 cut(s)	1814
CciI	TCATGA	2 cut(s)	973, 1171
CfoI	GCGC	2 cut(s)	166, 1250
Cfr10I	RCCGGY	3 cut(s)	120, 559, 978
Cfr13I	GGNCC	5 cut(s)	193, 229, 1528, 1958, 1977
CseI	GACGC	1 cut(s)	41
Csp6I	GTAC	1 cut(s)	544
CspAI	ACCGGT	1 cut(s)	120
CviAII	CATG	7 cut(s)	463, 974, 989, 1069, 1172, 1520, 1819
CviQI	GTAC	1 cut(s)	544
DpnI	GATC	8 cut(s)	69, 80, 150, 669, 948, 1023, 1234, 1368
DpnII	GATC	8 cut(s)	67, 78, 148, 667, 946, 1021, 1232, 1366
DraI	TTTAAA	1 cut(s)	1345
DrdI	GACNNNNNNGTC	1 cut(s)	200
DseDI	GACNNNNNNGTC	1 cut(s)	200
Eam1104I	CTCTTC	6 cut(s)	600, 729, 918, 1572, 1743, 1794
EarI	CTCTTC	6 cut(s)	600, 729, 918, 1572, 1743, 1794
EciI	GGCGGA	2 cut(s)	103, 860
Ecl136II	GAGCTC	2 cut(s)	133, 1543
Eco130I	CCWWGG	1 cut(s)	1818
Eco147I	AGGCCT	3 cut(s)	281, 934, 1950
Eco24I	GRGCYC	2 cut(s)	135, 1545
Eco31I	GGTCTC	1 cut(s)	328
Eco47I	GGWCC	2 cut(s)	193, 1958
Eco47III	AGCGCT	1 cut(s)	1249
Eco53kI	GAGCTC	2 cut(s)	133, 1543
Eco57I	CTGAAG	1 cut(s)	1659
Eco88I	CYCGRG	1 cut(s)	1864
EcoICRI	GAGCTC	2 cut(s)	133, 1543
EcoNI	CCTNNNNNAGG	1 cut(s)	1240
EcoRI	GAATTC	3 cut(s)	91, 181, 445
EcoRII	CCWGG	3 cut(s)	1874, 1950, 1979
EcoT14I	CCWWGG	1 cut(s)	1818
EcoT22I	ATGCAT	1 cut(s)	1560
EcoT38I	GRGCYC	2 cut(s)	135, 1545
ErhI	CCWWGG	1 cut(s)	1818
Esp3I	CGTCTC	3 cut(s)	246, 267, 351
FaeI	CATG	7 cut(s)	466, 977, 992, 1072, 1175, 1523, 1822
FatI	CATG	7 cut(s)	462, 973, 988, 1068, 1171, 1519, 1818
FauI	CCCGC	2 cut(s)	159, 511
FauNDI	CATATG	2 cut(s)	456, 1359
FbaI	TGATCA	1 cut(s)	946
FblI	GTMKAC	1 cut(s)	1407
FokI	GGATG	8 cut(s)	392, 434, 1114, 1202, 1276, 1391, 1412, 1858
FriOI	GRGCYC	2 cut(s)	135, 1545
FspBI	CTAG	8 cut(s)	146, 354, 642, 654, 879, 1592, 1827, 1962
GlaI	GCGC	2 cut(s)	165, 1249
GsaI	CCCAGC	2 cut(s)	1101, 1335
GsuI	CTGGAG	2 cut(s)	728, 1475
HaeII	RGCGCY	1 cut(s)	1251
HaeIII	GGCC	9 cut(s)	230, 281, 629, 713, 934, 1391, 1529, 1950, 1978
HapII	CCGG	6 cut(s)	71, 101, 121, 552, 560, 979
HgaI	GACGC	1 cut(s)	41
HhaI	GCGC	2 cut(s)	166, 1250
Hin1I	GRCGYC	3 cut(s)	33, 405, 752
Hin1II	CATG	7 cut(s)	466, 977, 992, 1072, 1175, 1523, 1822
Hin6I	GCGC	2 cut(s)	164, 1248
HinP1I	GCGC	2 cut(s)	164, 1248
HincII	GTYRAC	2 cut(s)	900, 1910
HindII	GTYRAC	2 cut(s)	900, 1910
HinfI	GANTC	7 cut(s)	911, 1040, 1106, 1168, 1201, 1772, 1862
HpaII	CCGG	6 cut(s)	71, 101, 121, 552, 560, 979
Hpy166II	GTNNAC	6 cut(s)	546, 900, 1408, 1508, 1910, 1958
Hpy188I	TCNGA	9 cut(s)	193, 672, 808, 1030, 1039, 1371, 1777, 1883, 2023
Hpy8I	GTNNAC	6 cut(s)	546, 900, 1408, 1508, 1910, 1958
Hpy99I	CGWCG	6 cut(s)	29, 56, 68, 100, 407, 410
HpyAV	CCTTC	7 cut(s)	286, 313, 370, 412, 834, 1576, 1604
HpyCH4III	ACNGT	2 cut(s)	303, 1722
HpyCH4IV	ACGT	3 cut(s)	54, 405, 752
HpyCH4V	TGCA	9 cut(s)	199, 370, 785, 1088, 1310, 1382, 1471, 1558, 1688
HpySE526I	ACGT	3 cut(s)	54, 405, 752
Hsp92I	GRCGYC	3 cut(s)	33, 405, 752
Hsp92II	CATG	7 cut(s)	466, 977, 992, 1072, 1175, 1523, 1822
HspAI	GCGC	2 cut(s)	164, 1248
KroI	GCCGGC	1 cut(s)	559
KroNI	GCCGGC	1 cut(s)	561
Ksp22I	TGATCA	1 cut(s)	946
Kzo9I	GATC	8 cut(s)	67, 78, 148, 667, 946, 1021, 1232, 1366
LguI	GCTCTTC	2 cut(s)	600, 918
LmnI	GCTCC	7 cut(s)	138, 658, 1245, 1540, 1884, 1897, 2056
LweI	GCATC	8 cut(s)	28, 997, 1097, 1369, 1454, 1801, 1822, 1880
MaeI	CTAG	8 cut(s)	146, 354, 642, 654, 879, 1592, 1827, 1962
MaeII	ACGT	3 cut(s)	54, 405, 752
MalI	GATC	8 cut(s)	69, 80, 150, 669, 948, 1023, 1234, 1368
MbiI	CCGCTC	1 cut(s)	157
MboI	GATC	8 cut(s)	67, 78, 148, 667, 946, 1021, 1232, 1366
MfeI	CAATTG	1 cut(s)	1764
MflI	RGATCY	1 cut(s)	1232
MhlI	GDGCHC	3 cut(s)	48, 135, 1545
MlyI	GAGTC	4 cut(s)	905, 1195, 1781, 1856
MmeI	TCCRAC	1 cut(s)	786
Mph1103I	ATGCAT	1 cut(s)	1560
MroNI	GCCGGC	1 cut(s)	559
MroXI	GAANNNNTTC	1 cut(s)	1299
MslI	CAYNNNNRTG	1 cut(s)	455
MspA1I	CMGCKG	3 cut(s)	329, 706, 1453
MspCI	CTTAAG	3 cut(s)	1733, 1849, 1939
MspI	CCGG	6 cut(s)	71, 101, 121, 552, 560, 979
MspR9I	CCNGG	3 cut(s)	1876, 1952, 1981
MunI	CAATTG	1 cut(s)	1764
Mva1269I	GAATGC	2 cut(s)	1474, 1560
MvaI	CCWGG	3 cut(s)	1876, 1952, 1981
MvnI	CGCG	4 cut(s)	129, 153, 166, 515
NaeI	GCCGGC	1 cut(s)	561
NcoI	CCATGG	1 cut(s)	1818
NdeI	CATATG	2 cut(s)	456, 1359
NdeII	GATC	8 cut(s)	67, 78, 148, 667, 946, 1021, 1232, 1366
NgoMIV	GCCGGC	1 cut(s)	559
NlaIII	CATG	7 cut(s)	466, 977, 992, 1072, 1175, 1523, 1822
NlaIV	GGNNCC	4 cut(s)	75, 125, 1234, 1880
NmeAIII	GCCGAG	4 cut(s)	166, 555, 886, 1417
NruI	TCGCGA	1 cut(s)	153
NsiI	ATGCAT	1 cut(s)	1560
NspI	RCATGY	1 cut(s)	1523
NspV	TTCGAA	1 cut(s)	185
PaeR7I	CTCGAG	1 cut(s)	1864
PagI	TCATGA	2 cut(s)	973, 1171
PceI	AGGCCT	3 cut(s)	281, 934, 1950
PciSI	GCTCTTC	2 cut(s)	600, 918
PcsI	WCGNNNNNNNCGW	2 cut(s)	33, 60
PctI	GAATGC	2 cut(s)	1474, 1560
PdiI	GCCGGC	1 cut(s)	561
PdmI	GAANNNNTTC	1 cut(s)	1299
PfeI	GAWTC	3 cut(s)	1040, 1106, 1168
PflFI	GACNNNGTC	1 cut(s)	404
PinAI	ACCGGT	1 cut(s)	120
Ple19I	CGATCG	1 cut(s)	81
PleI	GAGTC	4 cut(s)	905, 1195, 1780, 1856
PpsI	GAGTC	4 cut(s)	905, 1195, 1780, 1856
PsiI	TTATAA	1 cut(s)	581
Psp124BI	GAGCTC	2 cut(s)	135, 1545
Psp6I	CCWGG	3 cut(s)	1874, 1950, 1979
PspFI	CCCAGC	2 cut(s)	1097, 1331
PspGI	CCWGG	3 cut(s)	1874, 1950, 1979
PspN4I	GGNNCC	4 cut(s)	75, 125, 1234, 1880
PspPI	GGNCC	5 cut(s)	193, 229, 1528, 1958, 1977
PspXI	VCTCGAGB	1 cut(s)	1864
PstI	CTGCAG	2 cut(s)	1473, 1690
PstNI	CAGNNNCTG	1 cut(s)	1814
PsuI	RGATCY	1 cut(s)	1232
PsyI	GACNNNGTC	1 cut(s)	404
PvuI	CGATCG	1 cut(s)	81
PvuII	CAGCTG	2 cut(s)	706, 1453
RruI	TCGCGA	1 cut(s)	153
RsaI	GTAC	1 cut(s)	545
RsaNI	GTAC	1 cut(s)	544
RseI	CAYNNNNRTG	1 cut(s)	455
SacI	GAGCTC	2 cut(s)	135, 1545
SapI	GCTCTTC	2 cut(s)	600, 918
Sau3AI	GATC	8 cut(s)	67, 78, 148, 667, 946, 1021, 1232, 1366
Sau96I	GGNCC	5 cut(s)	193, 229, 1528, 1958, 1977
SchI	GAGTC	4 cut(s)	905, 1195, 1781, 1856
ScrFI	CCNGG	3 cut(s)	1876, 1952, 1981
SduI	GDGCHC	3 cut(s)	48, 135, 1545
SfaNI	GCATC	8 cut(s)	28, 997, 1097, 1369, 1454, 1801, 1822, 1880
SfcI	CTRYAG	2 cut(s)	1469, 1686
Sfr274I	CTCGAG	1 cut(s)	1864
SfuI	TTCGAA	1 cut(s)	185
SinI	GGWCC	2 cut(s)	193, 1958
SlaI	CTCGAG	1 cut(s)	1864
SmiMI	CAYNNNNRTG	1 cut(s)	455
SmlI	CTYRAG	7 cut(s)	1056, 1385, 1733, 1787, 1849, 1864, 1939
SmoI	CTYRAG	7 cut(s)	1056, 1385, 1733, 1787, 1849, 1864, 1939
SseBI	AGGCCT	3 cut(s)	281, 934, 1950
SspMI	CTAG	8 cut(s)	146, 354, 642, 654, 879, 1592, 1827, 1962
SstI	GAGCTC	2 cut(s)	135, 1545
StuI	AGGCCT	3 cut(s)	281, 934, 1950
StyD4I	CCNGG	3 cut(s)	1874, 1950, 1979
StyI	CCWWGG	1 cut(s)	1818
TaaI	ACNGT	2 cut(s)	303, 1722
TaiI	ACGT	3 cut(s)	57, 408, 755
TaqI	TCGA	6 cut(s)	185, 536, 914, 965, 1545, 1865
TatI	WGTACW	1 cut(s)	543
TauI	GCSGC	3 cut(s)	24, 160, 518
TfiI	GAWTC	3 cut(s)	1040, 1106, 1168
TscAI	CASTG	2 cut(s)	637, 1991
TspDTI	ATGAA	8 cut(s)	962, 1010, 1131, 1188, 1206, 1416, 1614, 2064
TspRI	CASTG	2 cut(s)	637, 1991
Tth111I	GACNNNGTC	1 cut(s)	404
Vha464I	CTTAAG	3 cut(s)	1733, 1849, 1939
VpaK11BI	GGWCC	2 cut(s)	193, 1958
XagI	CCTNNNNNAGG	1 cut(s)	1240
XapI	RAATTY	9 cut(s)	91, 181, 445, 508, 904, 955, 969, 1346, 1919
XceI	RCATGY	1 cut(s)	1523
XhoI	CTCGAG	1 cut(s)	1864
XmiI	GTMKAC	1 cut(s)	1407
XmnI	GAANNNNTTC	1 cut(s)	1299
XspI	CTAG	8 cut(s)	146, 354, 642, 654, 879, 1592, 1827, 1962
ZraI	GACGTC	2 cut(s)	406, 753
Zsp2I	ATGCAT	1 cut(s)	1560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.