Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0020412

Physical Location & Seq

Genomic Coordinates Forward (+)

21084990 .. 21105260

Gene Structure 20271 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G016610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGAGCAAGCTTTCAAAGATGAAGTTTTTGTGGGTTGGCATTGTTGTAGTGCTAGTTTTCACCAAATGGGCTAATGGGTTTGAGGAGCATAGTTTTAATGAAACAGAGCTGTCCTGGTTGGAGGGCTATGGAGAATCCAAGGCTGCTGTAACTGGGGTGATGGTAGGACTAACCCTTATTCCAGGAGCTGGTGCCAAAGGAGCAGTCTGCCTCGATGGAACCTTACCCAGGTATCATTTGCATCGTGGGTACGGGTCAGGGGCAAATAGCTGGCTTATTCAATTGGAGACTAACGGAAATGGTGCAGGAAGGAATGATGGCGGGGACTTTGATGATGCTTTTGACAAATTAGTGGATGGATCGTTCTGTATTCGACCCATCGAGCTCAAATTTGTGCTGGGTTTATCGAATTTCTCCCTTCTTGCTCAAATTCAAAGTTCAAAATTGGGTCTTTGCGGTTTCGATAGAAAACCGCTGAAATGGCAATTAAGTCCCTCATCTTCTTCTCTCTTTCAATCTGAACCAACATCGCAATGTCCAATTGTGGCGGTTCAACCGGTGACCACGGTGGCGGAGGCCACAGCTGAGGCCAAGGAAGAGGAAACCCCAGCGGTCAGGCCAGAGGCGCAGGCTACACTCCGGCGCCCCCACCTGCTCCGGCGTATGCTCCAGCGTATACTCCAGCGCCTGCTCCGGCATATTCTCCGGCGCCGGCTGTGGCCTTATCGAGCACGGTTGGCAGTGCCCGGAGGCTTGACGATAAGGAACAGAGTGTTGGCGGAGCCCGGAAACTTGACGGCGGGAGGAAACGTGGTCGCTTCGACCTGGATTCCGCCTTGGTCTGAGGGCAGCGGCGATTCGTGGTTGGGATATGTTTCTCTTGATGTCAAGGCAGGAGGCGGCGGTGCAGTGGCAGTGCTCAGCCAGAAGAAACTGTTGCAAGATGGCAATGATGCCTTGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0030312 GO:0044464 GO:0045229 GO:0052689 GO:0052793 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

PAE

Protein Analysis

321

Amino Acids

34.78

Weight (kDa)

9.17

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAE	PF03283	52 - 99	8.2e-15	Pectinacetylesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020412)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G303100_v2.0.a1
pyrus_communis	pycom04g16370
rosa_chinensis	RchiOBHm_Chr1g0328041
rosa_roxburghii	Rroxscaffold_4G00289790
rosa_samantha	Rh5AG130300
rosa_wichuraiana	Rw5G016610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	660
Acc36I	ACCTGC	1 cut(s)	660
AccB1I	GGYRCC	3 cut(s)	191, 642, 708
AccB7I	CCANNNNNTGG	1 cut(s)	188
AccI	GTMKAC	1 cut(s)	676
AclWI	GGATC	1 cut(s)	367
AcsI	RAATTY	3 cut(s)	389, 409, 429
AcyI	GRCGYC	2 cut(s)	643, 709
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	2 cut(s)	188, 228
AgeI	ACCGGT	1 cut(s)	556
AgsI	TTSAA	6 cut(s)	15, 281, 434, 441, 515, 554
AjnI	CCWGG	4 cut(s)	113, 181, 227, 824
AjuI	GAANNNNNNNTTGG	2 cut(s)	758, 790
AloI	GAACNNNNNNTCC	2 cut(s)	347, 379
AluBI	AGCT	6 cut(s)	10, 109, 188, 270, 385, 584
AluI	AGCT	6 cut(s)	10, 109, 188, 270, 385, 584
Alw21I	GWGCWC	3 cut(s)	387, 733, 921
Alw26I	GTCTC	1 cut(s)	281
AlwI	GGATC	1 cut(s)	367
AlwNI	CAGNNNCTG	2 cut(s)	188, 688
AoxI	GGCC	4 cut(s)	576, 588, 617, 719
ApeKI	GCWGC	2 cut(s)	143, 849
ApoI	RAATTY	3 cut(s)	389, 409, 429
ArsI	GACNNNNNNTTYG	2 cut(s)	189, 221
AsiGI	ACCGGT	1 cut(s)	556
AspLEI	GCGC	4 cut(s)	628, 645, 687, 711
AsuC2I	CCSGG	2 cut(s)	747, 786
AsuHPI	GGTGA	3 cut(s)	52, 169, 571
BaeGI	GKGCMC	1 cut(s)	747
BaeI	ACNNNNGTAYC	2 cut(s)	215, 248
BanI	GGYRCC	3 cut(s)	191, 642, 708
BanII	GRGCYC	2 cut(s)	387, 786
Bbv12I	GWGCWC	3 cut(s)	387, 733, 921
BbvCI	CCTCAGC	1 cut(s)	585
BbvI	GCAGC	2 cut(s)	130, 861
BccI	CCATC	6 cut(s)	154, 209, 311, 350, 386, 938
BceAI	ACGGC	1 cut(s)	813
BciT130I	CCWGG	4 cut(s)	115, 183, 229, 826
BcnI	CCSGG	2 cut(s)	747, 786
BcoDI	GTCTC	1 cut(s)	281
BfaI	CTAG	1 cut(s)	53
BfoI	RGCGCY	3 cut(s)	646, 688, 712
BfuAI	ACCTGC	1 cut(s)	660
BisI	GCNGC	4 cut(s)	144, 850, 853, 901
BlpI	GCTNAGC	1 cut(s)	920
BlsI	GCNGC	4 cut(s)	145, 851, 854, 902
Bme1390I	CCNGG	6 cut(s)	115, 183, 229, 747, 786, 826
BmiI	GGNNCC	5 cut(s)	193, 220, 644, 710, 783
BmrFI	CCNGG	6 cut(s)	115, 183, 229, 747, 786, 826
BmrI	ACTGGG	1 cut(s)	162
BmsI	GCATC	3 cut(s)	250, 325, 943
BmuI	ACTGGG	1 cut(s)	162
BpmI	CTGGAG	2 cut(s)	653, 665
Bpu10I	CCTNAGC	1 cut(s)	585
Bpu1102I	GCTNAGC	1 cut(s)	920
BpuMI	CCSGG	2 cut(s)	747, 786
BsaHI	GRCGYC	2 cut(s)	643, 709
BsaJI	CCNNGG	6 cut(s)	138, 227, 564, 591, 836, 957
BsaWI	WCCGGW	1 cut(s)	556
BsaXI	ACNNNNNCTCC	2 cut(s)	795, 825
Bsc4I	CCNNNNNNNGG	2 cut(s)	188, 228
Bse118I	RCCGGY	2 cut(s)	556, 711
Bse1I	ACTGG	1 cut(s)	157
Bse3DI	GCAATG	2 cut(s)	539, 955
BseBI	CCWGG	4 cut(s)	115, 183, 229, 826
BseDI	CCNNGG	6 cut(s)	138, 227, 564, 591, 836, 957
BseGI	GGATG	1 cut(s)	361
BseLI	CCNNNNNNNGG	2 cut(s)	188, 228
BseMI	GCAATG	2 cut(s)	539, 955
BseMII	CTCAG	3 cut(s)	576, 834, 934
BseNI	ACTGG	1 cut(s)	157
BseRI	GAGGAG	1 cut(s)	98
BseSI	GKGCMC	1 cut(s)	747
BseXI	GCAGC	2 cut(s)	130, 861
BseYI	CCCAGC	2 cut(s)	397, 607
BsgI	GTGCAG	2 cut(s)	324, 927
BshFI	GGCC	4 cut(s)	578, 590, 619, 721
BshNI	GGYRCC	3 cut(s)	191, 642, 708
BshTI	ACCGGT	1 cut(s)	556
BsiHKAI	GWGCWC	3 cut(s)	387, 733, 921
BsiSI	CCGG	8 cut(s)	557, 640, 658, 694, 706, 712, 747, 786
BslFI	GGGAC	2 cut(s)	338, 477
BslI	CCNNNNNNNGG	2 cut(s)	188, 228
BsmAI	GTCTC	1 cut(s)	281
BsmFI	GGGAC	2 cut(s)	338, 477
BsnI	GGCC	4 cut(s)	578, 590, 619, 721
Bsp1286I	GDGCHC	5 cut(s)	387, 733, 747, 786, 921
Bsp143I	GATC	1 cut(s)	359
Bsp1720I	GCTNAGC	1 cut(s)	920
BspANI	GGCC	4 cut(s)	578, 590, 619, 721
BspCNI	CTCAG	3 cut(s)	577, 835, 933
BspLI	GGNNCC	5 cut(s)	193, 220, 644, 710, 783
BspMI	ACCTGC	1 cut(s)	660
BspPI	GGATC	1 cut(s)	367
BspT107I	GGYRCC	3 cut(s)	191, 642, 708
BsrDI	GCAATG	2 cut(s)	539, 955
BsrFI	RCCGGY	2 cut(s)	556, 711
BsrI	ACTGG	1 cut(s)	157
BssAI	RCCGGY	2 cut(s)	556, 711
BssECI	CCNNGG	6 cut(s)	138, 227, 564, 591, 836, 957
BssMI	GATC	1 cut(s)	359
BssNAI	GTATAC	1 cut(s)	677
BssNI	GRCGYC	2 cut(s)	643, 709
BssT1I	CCWWGG	4 cut(s)	138, 591, 836, 957
Bst1107I	GTATAC	1 cut(s)	677
Bst2UI	CCWGG	4 cut(s)	115, 183, 229, 826
Bst4CI	ACNGT	3 cut(s)	568, 735, 936
Bst6I	CTCTTC	1 cut(s)	591
BstACI	GRCGYC	2 cut(s)	643, 709
BstC8I	GCNNGC	5 cut(s)	8, 272, 630, 689, 713
BstDEI	CTNAG	3 cut(s)	585, 843, 920
BstDSI	CCRYGG	1 cut(s)	564
BstEII	GGTNACC	1 cut(s)	559
BstENI	CCTNNNNNAGG	1 cut(s)	226
BstF5I	GGATG	1 cut(s)	361
BstH2I	RGCGCY	3 cut(s)	646, 688, 712
BstHHI	GCGC	4 cut(s)	628, 645, 687, 711
BstKTI	GATC	1 cut(s)	362
BstMAI	GTCTC	1 cut(s)	281
BstMBI	GATC	1 cut(s)	359
BstMWI	GCNNNNNNNGC	4 cut(s)	200, 481, 625, 737
BstNI	CCWGG	4 cut(s)	115, 183, 229, 826
BstPI	GGTNACC	1 cut(s)	559
BstSCI	CCNGG	6 cut(s)	113, 181, 227, 745, 784, 824
BstSLI	GKGCMC	1 cut(s)	747
BstV1I	GCAGC	2 cut(s)	130, 861
BstZ17I	GTATAC	1 cut(s)	677
BsuRI	GGCC	4 cut(s)	578, 590, 619, 721
BtgI	CCRYGG	1 cut(s)	564
BtgZI	GCGATG	1 cut(s)	513
BtsCI	GGATG	1 cut(s)	361
BtsI	GCAGTG	3 cut(s)	747, 915, 921
BtsIMutI	CAGTG	3 cut(s)	747, 915, 921
BveI	ACCTGC	1 cut(s)	660
Cac8I	GCNNGC	5 cut(s)	8, 272, 630, 689, 713
CaiI	CAGNNNCTG	2 cut(s)	188, 688
CfoI	GCGC	4 cut(s)	628, 645, 687, 711
Cfr10I	RCCGGY	2 cut(s)	556, 711
Csp6I	GTAC	1 cut(s)	250
CspAI	ACCGGT	1 cut(s)	556
CviAII	CATG	1 cut(s)	963
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	3 cut(s)	585, 843, 920
DinI	GGCGCC	2 cut(s)	644, 710
DpnI	GATC	1 cut(s)	361
DpnII	GATC	1 cut(s)	359
Eam1104I	CTCTTC	1 cut(s)	591
EarI	CTCTTC	1 cut(s)	591
EciI	GGCGGA	3 cut(s)	587, 794, 822
Ecl136II	GAGCTC	1 cut(s)	385
Eco130I	CCWWGG	4 cut(s)	138, 591, 836, 957
Eco24I	GRGCYC	2 cut(s)	387, 786
Eco53kI	GAGCTC	1 cut(s)	385
Eco91I	GGTNACC	1 cut(s)	559
EcoICRI	GAGCTC	1 cut(s)	385
EcoNI	CCTNNNNNAGG	1 cut(s)	226
EcoO65I	GGTNACC	1 cut(s)	559
EcoRII	CCWGG	4 cut(s)	113, 181, 227, 824
EcoT14I	CCWWGG	4 cut(s)	138, 591, 836, 957
EcoT38I	GRGCYC	2 cut(s)	387, 786
EgeI	GGCGCC	2 cut(s)	644, 710
EheI	GGCGCC	2 cut(s)	644, 710
ErhI	CCWWGG	4 cut(s)	138, 591, 836, 957
FaeI	CATG	1 cut(s)	966
FaiI	YATR	7 cut(s)	90, 129, 665, 677, 699, 873, 964
FaqI	GGGAC	2 cut(s)	338, 477
FatI	CATG	1 cut(s)	962
FauI	CCCGC	2 cut(s)	314, 793
FblI	GTMKAC	1 cut(s)	676
Fnu4HI	GCNGC	4 cut(s)	144, 850, 853, 901
FokI	GGATG	1 cut(s)	368
FriOI	GRGCYC	2 cut(s)	387, 786
Fsp4HI	GCNGC	4 cut(s)	144, 850, 853, 901
FspBI	CTAG	1 cut(s)	53
GlaI	GCGC	4 cut(s)	627, 644, 686, 710
GluI	GCNGC	4 cut(s)	144, 850, 853, 901
GsaI	CCCAGC	2 cut(s)	401, 611
GsuI	CTGGAG	2 cut(s)	653, 665
HaeII	RGCGCY	3 cut(s)	646, 688, 712
HaeIII	GGCC	4 cut(s)	578, 590, 619, 721
HapII	CCGG	8 cut(s)	557, 640, 658, 694, 706, 712, 747, 786
HhaI	GCGC	4 cut(s)	628, 645, 687, 711
Hin1I	GRCGYC	2 cut(s)	643, 709
Hin1II	CATG	1 cut(s)	966
Hin6I	GCGC	4 cut(s)	626, 643, 685, 709
HinP1I	GCGC	4 cut(s)	626, 643, 685, 709
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	3 cut(s)	134, 829, 857
HpaII	CCGG	8 cut(s)	557, 640, 658, 694, 706, 712, 747, 786
HphI	GGTGA	3 cut(s)	52, 169, 571
Hpy166II	GTNNAC	1 cut(s)	677
Hpy188I	TCNGA	2 cut(s)	520, 844
Hpy188III	TCNNGA	1 cut(s)	881
Hpy8I	GTNNAC	1 cut(s)	677
HpyAV	CCTTC	2 cut(s)	303, 428
HpyCH4III	ACNGT	3 cut(s)	568, 735, 936
HpyCH4IV	ACGT	1 cut(s)	810
HpyCH4V	TGCA	4 cut(s)	241, 305, 908, 940
HpyF10VI	GCNNNNNNNGC	4 cut(s)	200, 481, 625, 737
HpyF3I	CTNAG	3 cut(s)	585, 843, 920
HpySE526I	ACGT	1 cut(s)	810
Hsp92I	GRCGYC	2 cut(s)	643, 709
Hsp92II	CATG	1 cut(s)	966
HspAI	GCGC	4 cut(s)	626, 643, 685, 709
KasI	GGCGCC	2 cut(s)	642, 708
KroI	GCCGGC	1 cut(s)	711
KroNI	GCCGGC	1 cut(s)	713
Kzo9I	GATC	1 cut(s)	359
LmnI	GCTCC	7 cut(s)	85, 185, 200, 660, 672, 696, 781
Lsp1109I	GCAGC	2 cut(s)	130, 861
LweI	GCATC	3 cut(s)	250, 325, 943
MaeI	CTAG	1 cut(s)	53
MaeII	ACGT	1 cut(s)	810
MaeIII	GTNAC	2 cut(s)	148, 559
MalI	GATC	1 cut(s)	361
MboI	GATC	1 cut(s)	359
MboII	GAAGA	4 cut(s)	492, 495, 608, 940
MfeI	CAATTG	2 cut(s)	281, 540
MhlI	GDGCHC	5 cut(s)	387, 733, 747, 786, 921
MluCI	AATT	8 cut(s)	281, 347, 389, 409, 429, 443, 485, 540
Mly113I	GGCGCC	2 cut(s)	643, 709
MmeI	TCCRAC	1 cut(s)	99
MroNI	GCCGGC	1 cut(s)	711
MseI	TTAA	2 cut(s)	96, 488
MslI	CAYNNNNRTG	1 cut(s)	532
MspA1I	CMGCKG	4 cut(s)	475, 584, 611, 852
MspI	CCGG	8 cut(s)	557, 640, 658, 694, 706, 712, 747, 786
MspR9I	CCNGG	6 cut(s)	115, 183, 229, 747, 786, 826
MunI	CAATTG	2 cut(s)	281, 540
MvaI	CCWGG	4 cut(s)	115, 183, 229, 826
MwoI	GCNNNNNNNGC	4 cut(s)	200, 481, 625, 737
NaeI	GCCGGC	1 cut(s)	713
NarI	GGCGCC	2 cut(s)	643, 709
NciI	CCSGG	2 cut(s)	747, 786
NdeII	GATC	1 cut(s)	359
NgoMIV	GCCGGC	1 cut(s)	711
NlaIII	CATG	1 cut(s)	966
NlaIV	GGNNCC	5 cut(s)	193, 220, 644, 710, 783
NmuCI	GTSAC	1 cut(s)	559
PaqCI	CACCTGC	1 cut(s)	660
PdiI	GCCGGC	1 cut(s)	713
PfeI	GAWTC	3 cut(s)	134, 829, 857
PflMI	CCANNNNNTGG	1 cut(s)	188
PfoI	TCCNGGA	1 cut(s)	181
PinAI	ACCGGT	1 cut(s)	556
PkrI	GCNGC	4 cut(s)	145, 851, 854, 902
PluTI	GGCGCC	2 cut(s)	646, 712
Psp124BI	GAGCTC	1 cut(s)	387
Psp6I	CCWGG	4 cut(s)	113, 181, 227, 824
PspEI	GGTNACC	1 cut(s)	559
PspFI	CCCAGC	2 cut(s)	397, 607
PspGI	CCWGG	4 cut(s)	113, 181, 227, 824
PspN4I	GGNNCC	5 cut(s)	193, 220, 644, 710, 783
PstNI	CAGNNNCTG	2 cut(s)	188, 688
PvuII	CAGCTG	1 cut(s)	584
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
RseI	CAYNNNNRTG	1 cut(s)	532
SacI	GAGCTC	1 cut(s)	387
SaqAI	TTAA	2 cut(s)	96, 488
SatI	GCNGC	4 cut(s)	144, 850, 853, 901
Sau3AI	GATC	1 cut(s)	359
ScrFI	CCNGG	6 cut(s)	115, 183, 229, 747, 786, 826
SduI	GDGCHC	5 cut(s)	387, 733, 747, 786, 921
SfaNI	GCATC	3 cut(s)	250, 325, 943
SfoI	GGCGCC	2 cut(s)	644, 710
SmiMI	CAYNNNNRTG	1 cut(s)	532
Sse9I	AATT	8 cut(s)	281, 347, 389, 409, 429, 443, 485, 540
SspDI	GGCGCC	2 cut(s)	642, 708
SspMI	CTAG	1 cut(s)	53
SstI	GAGCTC	1 cut(s)	387
StyD4I	CCNGG	6 cut(s)	113, 181, 227, 745, 784, 824
StyI	CCWWGG	4 cut(s)	138, 591, 836, 957
TaaI	ACNGT	3 cut(s)	568, 735, 936
TaiI	ACGT	1 cut(s)	813
TaqI	TCGA	7 cut(s)	213, 373, 381, 407, 462, 727, 821
TasI	AATT	8 cut(s)	281, 347, 389, 409, 429, 443, 485, 540
TauI	GCSGC	2 cut(s)	855, 903
TfiI	GAWTC	3 cut(s)	134, 829, 857
Tru1I	TTAA	2 cut(s)	96, 488
Tru9I	TTAA	2 cut(s)	96, 488
TscAI	CASTG	3 cut(s)	747, 915, 921
TseFI	GTSAC	1 cut(s)	559
TseI	GCWGC	2 cut(s)	143, 849
Tsp45I	GTSAC	1 cut(s)	559
TspDTI	ATGAA	2 cut(s)	35, 114
TspGWI	ACGGA	1 cut(s)	309
TspRI	CASTG	3 cut(s)	747, 915, 921
Van91I	CCANNNNNTGG	1 cut(s)	188
XagI	CCTNNNNNAGG	1 cut(s)	226
XapI	RAATTY	3 cut(s)	389, 409, 429
XmiI	GTMKAC	1 cut(s)	676
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.