Rw6G009780

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0021454
Physical Location & Seq
Reverse (-)
16486482 .. 16487381
900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G009780.1

Sequence Viewer

Length: 576 bp
ATGGTGTTAAGGTGGAGAGCAGCTCTTTCAGAAGCAGCAAATTTATCTGGGTGGCATTTCTCGGGCGGATATGAATATGAATTTATTGGTAAAATTGTTGAAGAGATTTCTGCACAAGTAAAAGAACCTATCTATTTGGATATGCCAAAGTGCCAAGTTGGGCTAGACTCTCGGGTAAAACATATACTTAAAATGTTAGATGTTGAAGGAAGTGATGTACGCATGGTAGGAATATGGGGAATTGGCGGAATAGGCAAAACAACAATTGCCAAAGCTGTTTACAATACAATTGCCCATAAGTTTGATGGTAGCTGCTTTTTGGCAAATGTTAGAGAATATTCAGACCAACATGGAGGTTTAGTCAACCTACAAAATACTCTTCTCTCTACCATTGTGCGGCAGAAAGAATTGAAAATAAACAATATTCATGAAGGAAACACTTTGTTGCGGAACTGGATGATCACGAAGGTTGTGAGCTCTTCAGGTTATATGCCTTCAAGAAAAAGAAAAATCATGATGATGATGAGAAACTTTGGATTAGCACTATTGTTAGATATGCTCATGGCCTTCCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

191

Amino Acids

21.59

Weight (kDa)

9.49

Isoelectric Point (pI)

39.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 58 - 156 1.3e-08 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021454)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0262671 RchiOBHm_Chr6g0262841
rosa_multiflora Rmu_sc0005237.1_g000020
rosa_roxburghii Rroxscaffold_7G00207680
rosa_wichuraiana Rw6G009780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 66, 246, 397, 448
AcsI RAATTY 2 cut(s) 40, 80
AcuI CTGAAG 1 cut(s) 465
AfaI GTAC 1 cut(s) 219
AfiI CCNNNNNNNGG 1 cut(s) 396
AgsI TTSAA 4 cut(s) 101, 206, 412, 498
AluBI AGCT 4 cut(s) 23, 275, 312, 477
AluI AGCT 4 cut(s) 23, 275, 312, 477
Alw21I GWGCWC 1 cut(s) 479
Ama87I CYCGRG 2 cut(s) 61, 171
AoxI GGCC 1 cut(s) 564
ApeKI GCWGC 3 cut(s) 20, 35, 312
ApoI RAATTY 2 cut(s) 40, 80
AvaI CYCGRG 2 cut(s) 61, 171
BanII GRGCYC 1 cut(s) 479
Bbv12I GWGCWC 1 cut(s) 479
BbvI GCAGC 3 cut(s) 32, 47, 299
BccI CCATC 1 cut(s) 299
BclI TGATCA 1 cut(s) 459
BfaI CTAG 1 cut(s) 164
BisI GCNGC 4 cut(s) 21, 36, 313, 398
BlsI GCNGC 4 cut(s) 22, 37, 314, 399
BmeT110I CYCGRG 2 cut(s) 61, 171
BplI GAGNNNNNCTC 2 cut(s) 7, 39
BsaXI ACNNNNNCTCC 2 cut(s) 345, 375
Bsc4I CCNNNNNNNGG 1 cut(s) 396
Bse1I ACTGG 1 cut(s) 458
BseGI GGATG 1 cut(s) 462
BseLI CCNNNNNNNGG 1 cut(s) 396
BseNI ACTGG 1 cut(s) 458
BseXI GCAGC 3 cut(s) 32, 47, 299
BsgI GTGCAG 1 cut(s) 96
BshFI GGCC 1 cut(s) 566
BsiHKAI GWGCWC 1 cut(s) 479
BsiHKCI CYCGRG 2 cut(s) 61, 171
BslI CCNNNNNNNGG 1 cut(s) 396
BsnI GGCC 1 cut(s) 566
BsoBI CYCGRG 2 cut(s) 61, 171
Bsp1286I GDGCHC 1 cut(s) 479
Bsp143I GATC 1 cut(s) 459
BspACI CCGC 4 cut(s) 66, 246, 397, 448
BspANI GGCC 1 cut(s) 566
BspHI TCATGA 2 cut(s) 427, 513
BspQI GCTCTTC 1 cut(s) 484
BsrI ACTGG 1 cut(s) 458
BssMI GATC 1 cut(s) 459
Bst6I CTCTTC 3 cut(s) 96, 384, 484
BstF5I GGATG 1 cut(s) 462
BstKTI GATC 1 cut(s) 462
BstMBI GATC 1 cut(s) 459
BstMWI GCNNNNNNNGC 1 cut(s) 252
BstV1I GCAGC 3 cut(s) 32, 47, 299
BsuRI GGCC 1 cut(s) 566
BtsCI GGATG 1 cut(s) 462
CciI TCATGA 2 cut(s) 427, 513
Csp6I GTAC 1 cut(s) 218
CviAII CATG 5 cut(s) 223, 350, 428, 514, 562
CviJI RGCY 6 cut(s) 23, 163, 275, 312, 477, 566
CviKI_1 RGCY 6 cut(s) 23, 163, 275, 312, 477, 566
CviQI GTAC 1 cut(s) 218
DpnI GATC 1 cut(s) 461
DpnII GATC 1 cut(s) 459
Eam1104I CTCTTC 3 cut(s) 96, 384, 484
EarI CTCTTC 3 cut(s) 96, 384, 484
EciI GGCGGA 2 cut(s) 81, 261
Ecl136II GAGCTC 1 cut(s) 477
Eco24I GRGCYC 1 cut(s) 479
Eco53kI GAGCTC 1 cut(s) 477
Eco57I CTGAAG 1 cut(s) 465
Eco88I CYCGRG 2 cut(s) 61, 171
EcoICRI GAGCTC 1 cut(s) 477
EcoT38I GRGCYC 1 cut(s) 479
FaeI CATG 5 cut(s) 226, 353, 431, 517, 565
FatI CATG 5 cut(s) 222, 349, 427, 513, 561
FbaI TGATCA 1 cut(s) 459
Fnu4HI GCNGC 4 cut(s) 21, 36, 313, 398
FokI GGATG 1 cut(s) 469
FriOI GRGCYC 1 cut(s) 479
Fsp4HI GCNGC 4 cut(s) 21, 36, 313, 398
FspBI CTAG 1 cut(s) 164
GluI GCNGC 4 cut(s) 21, 36, 313, 398
HaeIII GGCC 1 cut(s) 566
Hin1II CATG 5 cut(s) 226, 353, 431, 517, 565
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HinfI GANTC 1 cut(s) 167
Hpy166II GTNNAC 2 cut(s) 280, 364
Hpy188I TCNGA 2 cut(s) 31, 343
Hpy188III TCNNGA 4 cut(s) 428, 463, 498, 514
Hpy8I GTNNAC 2 cut(s) 280, 364
HpyAV CCTTC 4 cut(s) 200, 425, 460, 504
HpyCH4V TGCA 1 cut(s) 113
HpyF10VI GCNNNNNNNGC 1 cut(s) 252
Hsp92II CATG 5 cut(s) 226, 353, 431, 517, 565
Ksp22I TGATCA 1 cut(s) 459
Kzo9I GATC 1 cut(s) 459
LguI GCTCTTC 1 cut(s) 484
LpnPI CCDG 3 cut(s) 33, 439, 468
Lsp1109I GCAGC 3 cut(s) 32, 47, 299
MaeI CTAG 1 cut(s) 164
MalI GATC 1 cut(s) 461
MboI GATC 1 cut(s) 459
MboII GAAGA 3 cut(s) 113, 371, 471
MfeI CAATTG 2 cut(s) 264, 288
MhlI GDGCHC 1 cut(s) 479
MluCI AATT 7 cut(s) 40, 80, 93, 240, 264, 288, 407
MlyI GAGTC 1 cut(s) 161
MnlI CCTC 1 cut(s) 347
MseI TTAA 2 cut(s) 8, 189
MslI CAYNNNNRTG 1 cut(s) 518
MunI CAATTG 2 cut(s) 264, 288
MwoI GCNNNNNNNGC 1 cut(s) 252
NdeII GATC 1 cut(s) 459
NlaIII CATG 5 cut(s) 226, 353, 431, 517, 565
PagI TCATGA 2 cut(s) 427, 513
PciSI GCTCTTC 1 cut(s) 484
PkrI GCNGC 4 cut(s) 22, 37, 314, 399
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
Psp124BI GAGCTC 1 cut(s) 479
RsaI GTAC 1 cut(s) 219
RsaNI GTAC 1 cut(s) 218
RseI CAYNNNNRTG 1 cut(s) 518
SacI GAGCTC 1 cut(s) 479
SapI GCTCTTC 1 cut(s) 484
SaqAI TTAA 2 cut(s) 8, 189
SatI GCNGC 4 cut(s) 21, 36, 313, 398
Sau3AI GATC 1 cut(s) 459
SchI GAGTC 1 cut(s) 161
SduI GDGCHC 1 cut(s) 479
SmiMI CAYNNNNRTG 1 cut(s) 518
Sse9I AATT 7 cut(s) 40, 80, 93, 240, 264, 288, 407
SsiI CCGC 4 cut(s) 66, 246, 397, 448
SspI AATATT 2 cut(s) 338, 424
SspMI CTAG 1 cut(s) 164
SstI GAGCTC 1 cut(s) 479
TasI AATT 7 cut(s) 40, 80, 93, 240, 264, 288, 407
TauI GCSGC 1 cut(s) 400
Tru1I TTAA 2 cut(s) 8, 189
Tru9I TTAA 2 cut(s) 8, 189
TseI GCWGC 3 cut(s) 20, 35, 312
TspDTI ATGAA 4 cut(s) 87, 93, 416, 444
TspGWI ACGGA 1 cut(s) 560
XapI RAATTY 2 cut(s) 40, 80
XcmI CCANNNNNNNNNTGG 1 cut(s) 302
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.