AT1G01360

Polyketide cyclase / dehydrase and lipid transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012791
Physical Location & Seq
Forward (+)
141870 .. 143261
1392 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G01360.1

Sequence Viewer

Length: 564 bp
ATGATGGACGGCGTTGAAGGCGGCACGGCGATGTACGGTGGTCTCGAGACGGTGCAATACGTACGGACGCATCATCAACATCTGTGCAGAGAAAACCAGTGTACCTCTGCTCTTGTCAAACACATCAAAGCTCCTCTTCATCTCGTTTGGTCACTTGTACGGAGATTTGATCAGCCGCAGAAATACAAACCGTTTGTGAGCAGATGTACAGTAATCGGTGATCCTGAAATCGGCAGTCTTAGAGAAGTCAATGTTAAATCTGGTCTTCCTGCAACAACATCTACTGAGAGATTAGAACTTCTTGATGATGAAGAACACATCCTCGGTATCAAAATCATCGGTGGTGATCACAGACTTAAGAATTACTCGTCGATTTTGACGGTTCATCCGGAGATAATCGAGGGAAGAGCAGGAACGATGGTGATTGAATCGTTTGTAGTTGATGTTCCTCAAGGTAACACAAAGGATGAGACTTGCTACTTTGTTGAAGCACTTATCAGATGTAATCTCAAGTCACTAGCAGATGTTTCTGAAAGATTGGCTTCTCAGGACATTACTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010427 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023052 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045936 GO:0046983 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0090351 GO:0097305 GO:0097306 GO:0098772 GO:1901700 GO:1901701 GO:1905183
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

187

Amino Acids

20.9

Weight (kDa)

5.89

Isoelectric Point (pI)

44.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 39 - 178 2.3e-20 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012791)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01360
fragaria_vesca FvH4_7g16220
malus_domestica MD01G1078900.v1.1 MD07G1147700.v1.1
prunus_persica Prupe.2G185800_v2.0.a1
pyrus_communis pycom01g10720 pycom07g14670
rosa_chinensis RchiOBHm_Chr1g0359251
rosa_laevigata RLG00000027891
rosa_multiflora Rmu_ssc0000135.1_g000028
rosa_roxburghii Rroxscaffold_4G00297200
rosa_rugosa Rorug01G0268700 Rorug01G0268700
rosa_samantha Rh1AG282700 Rh1BG248900 Rh1CG266800 Rh1DG277900
rosa_wichuraiana Rw1G025090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 388
AciI CCGC 2 cut(s) 21, 176
AclWI GGATC 1 cut(s) 215
AfaI GTAC 5 cut(s) 35, 63, 103, 159, 208
AfiI CCNNNNNNNGG 1 cut(s) 230
AflII CTTAAG 1 cut(s) 356
AgsI TTSAA 3 cut(s) 17, 428, 488
AluBI AGCT 1 cut(s) 131
AluI AGCT 1 cut(s) 131
Alw26I GTCTC 3 cut(s) 41, 47, 464
AlwI GGATC 1 cut(s) 215
Ama87I CYCGRG 1 cut(s) 44
Aor13HI TCCGGA 1 cut(s) 388
AsuHPI GGTGA 3 cut(s) 230, 356, 433
AvaI CYCGRG 1 cut(s) 44
BaeI ACNNNNGTAYC 2 cut(s) 85, 118
BbsI GAAGAC 1 cut(s) 257
BccI CCATC 1 cut(s) 412
BceAI ACGGC 2 cut(s) 25, 42
BclI TGATCA 2 cut(s) 169, 346
BcoDI GTCTC 3 cut(s) 41, 47, 464
BfaI CTAG 1 cut(s) 518
BfrI CTTAAG 1 cut(s) 356
BisI GCNGC 2 cut(s) 22, 176
BlsI GCNGC 2 cut(s) 23, 177
BmeT110I CYCGRG 1 cut(s) 44
BmsI GCATC 1 cut(s) 79
BpiI GAAGAC 1 cut(s) 257
BpuEI CTTGAG 2 cut(s) 435, 494
BsaAI YACGTR 1 cut(s) 61
BsaI GGTCTC 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 322
BsaWI WCCGGW 1 cut(s) 388
Bsc4I CCNNNNNNNGG 1 cut(s) 230
Bse1I ACTGG 1 cut(s) 97
BseAI TCCGGA 1 cut(s) 388
BseDI CCNNGG 1 cut(s) 322
BseGI GGATG 3 cut(s) 318, 385, 472
BseLI CCNNNNNNNGG 1 cut(s) 230
BseMII CTCAG 2 cut(s) 276, 560
BseNI ACTGG 1 cut(s) 97
BseRI GAGGAG 1 cut(s) 123
BsgI GTGCAG 1 cut(s) 106
BsiHKCI CYCGRG 1 cut(s) 44
BsiSI CCGG 1 cut(s) 389
BsiWI CGTACG 1 cut(s) 61
BslI CCNNNNNNNGG 1 cut(s) 230
BsmAI GTCTC 3 cut(s) 41, 47, 464
BsmBI CGTCTC 1 cut(s) 41
Bso31I GGTCTC 1 cut(s) 47
BsoBI CYCGRG 1 cut(s) 44
Bsp13I TCCGGA 1 cut(s) 388
Bsp1407I TGTACA 1 cut(s) 206
Bsp143I GATC 3 cut(s) 169, 220, 346
BspACI CCGC 2 cut(s) 21, 176
BspCNI CTCAG 2 cut(s) 277, 559
BspEI TCCGGA 1 cut(s) 388
BspPI GGATC 1 cut(s) 215
BspQI GCTCTTC 1 cut(s) 400
BspTI CTTAAG 1 cut(s) 356
BspTNI GGTCTC 1 cut(s) 47
BsrGI TGTACA 1 cut(s) 206
BsrI ACTGG 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 322
BssMI GATC 3 cut(s) 169, 220, 346
Bst4CI ACNGT 5 cut(s) 38, 52, 192, 211, 382
Bst6I CTCTTC 2 cut(s) 141, 400
BstAFI CTTAAG 1 cut(s) 356
BstAUI TGTACA 1 cut(s) 206
BstBAI YACGTR 1 cut(s) 61
BstDEI CTNAG 4 cut(s) 239, 285, 546, 558
BstF5I GGATG 3 cut(s) 318, 385, 472
BstKTI GATC 3 cut(s) 172, 223, 349
BstMAI GTCTC 3 cut(s) 41, 47, 464
BstMBI GATC 3 cut(s) 169, 220, 346
BstMWI GCNNNNNNNGC 1 cut(s) 18
BstSNI TACGTA 1 cut(s) 61
BstV2I GAAGAC 1 cut(s) 257
BtgZI GCGATG 1 cut(s) 44
BtsCI GGATG 3 cut(s) 318, 385, 472
BtsIMutI CAGTG 1 cut(s) 104
CseI GACGC 1 cut(s) 76
Csp6I GTAC 5 cut(s) 34, 62, 102, 158, 207
CviJI RGCY 3 cut(s) 131, 175, 542
CviKI_1 RGCY 3 cut(s) 131, 175, 542
CviQI GTAC 5 cut(s) 34, 62, 102, 158, 207
DdeI CTNAG 4 cut(s) 239, 285, 546, 558
DpnI GATC 3 cut(s) 171, 222, 348
DpnII GATC 3 cut(s) 169, 220, 346
Eam1104I CTCTTC 2 cut(s) 141, 400
EarI CTCTTC 2 cut(s) 141, 400
Eco105I TACGTA 1 cut(s) 61
Eco31I GGTCTC 1 cut(s) 47
Eco88I CYCGRG 1 cut(s) 44
Esp3I CGTCTC 1 cut(s) 41
FalI AAGNNNNNCTT 4 cut(s) 120, 152, 526, 558
FbaI TGATCA 2 cut(s) 169, 346
Fnu4HI GCNGC 2 cut(s) 22, 176
FokI GGATG 3 cut(s) 305, 372, 479
Fsp4HI GCNGC 2 cut(s) 22, 176
FspBI CTAG 1 cut(s) 518
GluI GCNGC 2 cut(s) 22, 176
HapII CCGG 1 cut(s) 389
HgaI GACGC 1 cut(s) 76
HinfI GANTC 1 cut(s) 428
HpaII CCGG 1 cut(s) 389
HphI GGTGA 3 cut(s) 230, 356, 433
Hpy166II GTNNAC 1 cut(s) 102
Hpy188I TCNGA 2 cut(s) 500, 532
Hpy188III TCNNGA 6 cut(s) 44, 46, 224, 302, 389, 548
Hpy8I GTNNAC 1 cut(s) 102
Hpy99I CGWCG 1 cut(s) 373
HpyAV CCTTC 1 cut(s) 11
HpyCH4III ACNGT 5 cut(s) 38, 52, 192, 211, 382
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 3 cut(s) 55, 87, 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 18
HpyF3I CTNAG 4 cut(s) 239, 285, 546, 558
HpySE526I ACGT 1 cut(s) 60
Kpn2I TCCGGA 1 cut(s) 388
Ksp22I TGATCA 2 cut(s) 169, 346
Kzo9I GATC 3 cut(s) 169, 220, 346
LguI GCTCTTC 1 cut(s) 400
LmnI GCTCC 1 cut(s) 136
LpnPI CCDG 7 cut(s) 110, 237, 246, 282, 396, 402, 533
LweI GCATC 1 cut(s) 79
MaeI CTAG 1 cut(s) 518
MaeII ACGT 1 cut(s) 60
MaeIII GTNAC 3 cut(s) 150, 455, 513
MalI GATC 3 cut(s) 171, 222, 348
MboI GATC 3 cut(s) 169, 220, 346
MboII GAAGA 4 cut(s) 128, 257, 323, 417
MluCI AATT 1 cut(s) 361
MnlI CCTC 5 cut(s) 115, 144, 332, 394, 459
MroI TCCGGA 1 cut(s) 388
MseI TTAA 2 cut(s) 255, 357
MslI CAYNNNNRTG 1 cut(s) 29
MspCI CTTAAG 1 cut(s) 356
MspI CCGG 1 cut(s) 389
MwoI GCNNNNNNNGC 1 cut(s) 18
NdeII GATC 3 cut(s) 169, 220, 346
NmuCI GTSAC 2 cut(s) 150, 513
PaeR7I CTCGAG 1 cut(s) 44
PciSI GCTCTTC 1 cut(s) 400
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PfeI GAWTC 1 cut(s) 428
Pfl23II CGTACG 1 cut(s) 61
PkrI GCNGC 2 cut(s) 23, 177
Ppu21I YACGTR 1 cut(s) 61
PspLI CGTACG 1 cut(s) 61
PsrI GAACNNNNNNTAC 2 cut(s) 429, 461
RsaI GTAC 5 cut(s) 35, 63, 103, 159, 208
RsaNI GTAC 5 cut(s) 34, 62, 102, 158, 207
RseI CAYNNNNRTG 1 cut(s) 29
SapI GCTCTTC 1 cut(s) 400
SaqAI TTAA 2 cut(s) 255, 357
SatI GCNGC 2 cut(s) 22, 176
Sau3AI GATC 3 cut(s) 169, 220, 346
SetI ASST 4 cut(s) 63, 107, 133, 457
SfaNI GCATC 1 cut(s) 79
Sfr274I CTCGAG 1 cut(s) 44
SlaI CTCGAG 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 29
SmlI CTYRAG 4 cut(s) 44, 356, 450, 509
SmoI CTYRAG 4 cut(s) 44, 356, 450, 509
SnaBI TACGTA 1 cut(s) 61
Sse9I AATT 1 cut(s) 361
SsiI CCGC 2 cut(s) 21, 176
SspMI CTAG 1 cut(s) 518
TaaI ACNGT 5 cut(s) 38, 52, 192, 211, 382
TaiI ACGT 1 cut(s) 63
TaqI TCGA 3 cut(s) 45, 371, 399
TasI AATT 1 cut(s) 361
TatI WGTACW 1 cut(s) 206
TauI GCSGC 2 cut(s) 24, 178
TfiI GAWTC 1 cut(s) 428
Tru1I TTAA 2 cut(s) 255, 357
Tru9I TTAA 2 cut(s) 255, 357
TscAI CASTG 1 cut(s) 104
TseFI GTSAC 2 cut(s) 150, 513
Tsp45I GTSAC 2 cut(s) 150, 513
TspDTI ATGAA 3 cut(s) 128, 324, 374
TspGWI ACGGA 2 cut(s) 79, 175
TspRI CASTG 1 cut(s) 104
Vha464I CTTAAG 1 cut(s) 356
XhoI CTCGAG 1 cut(s) 44
XspI CTAG 1 cut(s) 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.