RLG00000027891

Abscisic acid receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0012791
Physical Location & Seq
Forward (+)
16393385 .. 16395615
2231 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027891

Sequence Viewer

Length: 555 bp
ATGAGCAGCGTTGGAGGTGATTCAATGGAGGCCCAATATATAAGGAGGCATCACAGACACGAACCCAGAGAGAACCAGTGCACTTCTGCTCTGGTTAGGCATGTTAAAGCCCCTGTGCATCTGGTATGGTCATTAGTCAGGAGATTTGATCAACCCCAGAAGTACAAGCCCTTTGTTAGCAGGTGCATCATGAAGGGGGACCTTGGCATTGGGAGTCTTAGAGAAGTGAATGTTAAATCTGGGCTTCCAGCAACAACCAGTACTGAGAGGCTGGAGCTTCTCGATGACGACGAGCACATTCTTGGTATCAGGATCGTTGGTGGTGATCATAGGCTCAGGAATTACTCTTCAATTATTACCGTCCATCCTGAGGTTATAGATGGGAGACCAGGGACACTAGTTATCGAATCCTTTGTGGTGGATGTGCCTGATGGAAATACCAAGGATGAGACATGCTACTTTGTTGAGGCCCTGATCAGGTGCAACCTCAAGTCTTTGGCTGATGTCTCGGAGAGGATGGCTGTCCAGGATCGAACAGAACCTATCAATCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010427 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023052 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045936 GO:0046983 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0090351 GO:0097305 GO:0097306 GO:0098772 GO:1901700 GO:1901701 GO:1905183
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

185

Amino Acids

20.79

Weight (kDa)

6.5

Isoelectric Point (pI)

46.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 31 - 171 3.3e-20 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012791)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01360
fragaria_vesca FvH4_7g16220
malus_domestica MD01G1078900.v1.1 MD07G1147700.v1.1
prunus_persica Prupe.2G185800_v2.0.a1
pyrus_communis pycom01g10720 pycom07g14670
rosa_chinensis RchiOBHm_Chr1g0359251
rosa_laevigata RLG00000027891
rosa_multiflora Rmu_ssc0000135.1_g000028
rosa_roxburghii Rroxscaffold_4G00297200
rosa_rugosa Rorug01G0268700 Rorug01G0268700
rosa_samantha Rh1AG282700 Rh1BG248900 Rh1CG266800 Rh1DG277900
rosa_wichuraiana Rw1G025090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 171
Acc36I ACCTGC 1 cut(s) 171
AclWI GGATC 2 cut(s) 320, 537
AfaI GTAC 2 cut(s) 164, 262
AfiI CCNNNNNNNGG 2 cut(s) 370, 477
AgsI TTSAA 2 cut(s) 24, 351
AhlI ACTAGT 1 cut(s) 397
AjnI CCWGG 2 cut(s) 388, 525
AluBI AGCT 1 cut(s) 277
AluI AGCT 1 cut(s) 277
Alw21I GWGCWC 2 cut(s) 83, 297
Alw26I GTCTC 3 cut(s) 379, 443, 511
Alw44I GTGCAC 1 cut(s) 79
AlwI GGATC 2 cut(s) 320, 537
AoxI GGCC 2 cut(s) 30, 468
ApaLI GTGCAC 1 cut(s) 79
ApeKI GCWGC 1 cut(s) 6
AspS9I GGNCC 3 cut(s) 31, 199, 469
AsuHPI GGTGA 2 cut(s) 29, 335
AvaII GGWCC 1 cut(s) 199
AxyI CCTNAGG 1 cut(s) 369
BaeGI GKGCMC 1 cut(s) 83
Bbv12I GWGCWC 2 cut(s) 83, 297
BbvI GCAGC 1 cut(s) 18
BccI CCATC 4 cut(s) 372, 374, 425, 511
BciT130I CCWGG 2 cut(s) 390, 527
BclI TGATCA 3 cut(s) 148, 325, 474
BcoDI GTCTC 3 cut(s) 379, 443, 511
BcuI ACTAGT 1 cut(s) 397
BfaI CTAG 1 cut(s) 398
BfuAI ACCTGC 1 cut(s) 171
BisI GCNGC 1 cut(s) 7
BlsI GCNGC 1 cut(s) 8
BmcAI AGTACT 1 cut(s) 262
Bme1390I CCNGG 2 cut(s) 390, 527
Bme18I GGWCC 1 cut(s) 199
BmgT120I GGNCC 3 cut(s) 31, 199, 469
BmiI GGNNCC 1 cut(s) 200
BmrFI CCNGG 2 cut(s) 390, 527
BmsI GCATC 3 cut(s) 58, 127, 195
BpmI CTGGAG 1 cut(s) 293
Bpu10I CCTNAGC 1 cut(s) 335
BpuEI CTTGAG 1 cut(s) 473
BsaI GGTCTC 1 cut(s) 379
BsaJI CCNNGG 3 cut(s) 202, 389, 441
Bsc4I CCNNNNNNNGG 2 cut(s) 370, 477
Bse1I ACTGG 2 cut(s) 76, 258
Bse21I CCTNAGG 1 cut(s) 369
BseBI CCWGG 2 cut(s) 390, 527
BseDI CCNNGG 3 cut(s) 202, 389, 441
BseGI GGATG 4 cut(s) 364, 427, 451, 522
BseLI CCNNNNNNNGG 2 cut(s) 370, 477
BseMII CTCAG 3 cut(s) 255, 349, 360
BseNI ACTGG 2 cut(s) 76, 258
BseSI GKGCMC 1 cut(s) 83
BseXI GCAGC 1 cut(s) 18
BshFI GGCC 2 cut(s) 32, 470
BsiHKAI GWGCWC 2 cut(s) 83, 297
BslFI GGGAC 2 cut(s) 212, 406
BslI CCNNNNNNNGG 2 cut(s) 370, 477
BsmAI GTCTC 3 cut(s) 379, 443, 511
BsmFI GGGAC 2 cut(s) 212, 406
BsnI GGCC 2 cut(s) 32, 470
Bso31I GGTCTC 1 cut(s) 379
Bsp1286I GDGCHC 2 cut(s) 83, 297
Bsp143I GATC 5 cut(s) 148, 312, 325, 474, 529
BspANI GGCC 2 cut(s) 32, 470
BspCNI CTCAG 3 cut(s) 256, 348, 361
BspHI TCATGA 1 cut(s) 189
BspLI GGNNCC 1 cut(s) 200
BspMI ACCTGC 1 cut(s) 171
BspPI GGATC 2 cut(s) 320, 537
BspTNI GGTCTC 1 cut(s) 379
BsrI ACTGG 2 cut(s) 76, 258
BssECI CCNNGG 3 cut(s) 202, 389, 441
BssMI GATC 5 cut(s) 148, 312, 325, 474, 529
BssT1I CCWWGG 2 cut(s) 202, 441
Bst2UI CCWGG 2 cut(s) 390, 527
Bst4CI ACNGT 1 cut(s) 361
Bst6I CTCTTC 1 cut(s) 352
BstDEI CTNAG 4 cut(s) 218, 264, 335, 369
BstF5I GGATG 4 cut(s) 364, 427, 451, 522
BstKTI GATC 5 cut(s) 151, 315, 328, 477, 532
BstMAI GTCTC 3 cut(s) 379, 443, 511
BstMBI GATC 5 cut(s) 148, 312, 325, 474, 529
BstNI CCWGG 2 cut(s) 390, 527
BstNSI RCATGY 2 cut(s) 104, 456
BstSCI CCNGG 2 cut(s) 388, 525
BstSLI GKGCMC 1 cut(s) 83
BstV1I GCAGC 1 cut(s) 18
Bsu36I CCTNAGG 1 cut(s) 369
BsuRI GGCC 2 cut(s) 32, 470
BtsCI GGATG 4 cut(s) 364, 427, 451, 522
BtsIMutI CAGTG 1 cut(s) 83
BveI ACCTGC 1 cut(s) 171
CciI TCATGA 1 cut(s) 189
Cfr13I GGNCC 3 cut(s) 31, 199, 469
Csp6I GTAC 2 cut(s) 163, 261
CviAII CATG 3 cut(s) 101, 190, 453
CviQI GTAC 2 cut(s) 163, 261
DdeI CTNAG 4 cut(s) 218, 264, 335, 369
DpnI GATC 5 cut(s) 150, 314, 327, 476, 531
DpnII GATC 5 cut(s) 148, 312, 325, 474, 529
Eam1104I CTCTTC 1 cut(s) 352
EarI CTCTTC 1 cut(s) 352
Eco130I CCWWGG 2 cut(s) 202, 441
Eco31I GGTCTC 1 cut(s) 379
Eco47I GGWCC 1 cut(s) 199
Eco81I CCTNAGG 1 cut(s) 369
EcoO109I RGGNCCY 2 cut(s) 199, 469
EcoRII CCWGG 2 cut(s) 388, 525
EcoT14I CCWWGG 2 cut(s) 202, 441
ErhI CCWWGG 2 cut(s) 202, 441
FaeI CATG 3 cut(s) 104, 193, 456
FaiI YATR 8 cut(s) 39, 41, 102, 127, 191, 330, 377, 454
FaqI GGGAC 2 cut(s) 212, 406
FatI CATG 3 cut(s) 100, 189, 452
FbaI TGATCA 3 cut(s) 148, 325, 474
Fnu4HI GCNGC 1 cut(s) 7
FokI GGATG 4 cut(s) 351, 434, 458, 529
Fsp4HI GCNGC 1 cut(s) 7
FspBI CTAG 1 cut(s) 398
GluI GCNGC 1 cut(s) 7
GsuI CTGGAG 1 cut(s) 293
HaeIII GGCC 2 cut(s) 32, 470
Hin1II CATG 3 cut(s) 104, 193, 456
HinfI GANTC 3 cut(s) 20, 214, 407
HphI GGTGA 2 cut(s) 29, 335
Hpy166II GTNNAC 1 cut(s) 81
Hpy188I TCNGA 1 cut(s) 511
Hpy188III TCNNGA 6 cut(s) 139, 190, 281, 310, 337, 368
Hpy8I GTNNAC 1 cut(s) 81
Hpy99I CGWCG 1 cut(s) 293
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 1 cut(s) 361
HpyCH4V TGCA 4 cut(s) 81, 118, 186, 483
HpyF3I CTNAG 4 cut(s) 218, 264, 335, 369
Hsp92II CATG 3 cut(s) 104, 193, 456
Ksp22I TGATCA 3 cut(s) 148, 325, 474
Kzo9I GATC 5 cut(s) 148, 312, 325, 474, 529
LmnI GCTCC 1 cut(s) 274
Lsp1109I GCAGC 1 cut(s) 18
LweI GCATC 3 cut(s) 58, 127, 195
MaeI CTAG 1 cut(s) 398
MalI GATC 5 cut(s) 150, 314, 327, 476, 531
MboI GATC 5 cut(s) 148, 312, 325, 474, 529
MboII GAAGA 1 cut(s) 339
MhlI GDGCHC 2 cut(s) 83, 297
MluCI AATT 2 cut(s) 340, 351
MlyI GAGTC 1 cut(s) 223
MnlI CCTC 8 cut(s) 8, 22, 39, 261, 364, 460, 497, 507
MseI TTAA 2 cut(s) 105, 234
MspR9I CCNGG 2 cut(s) 390, 527
MvaI CCWGG 2 cut(s) 390, 527
NdeII GATC 5 cut(s) 148, 312, 325, 474, 529
NlaIII CATG 3 cut(s) 104, 193, 456
NlaIV GGNNCC 1 cut(s) 200
NspI RCATGY 2 cut(s) 104, 456
PagI TCATGA 1 cut(s) 189
PaqCI CACCTGC 1 cut(s) 171
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PfeI GAWTC 2 cut(s) 20, 407
PfoI TCCNGGA 1 cut(s) 525
PkrI GCNGC 1 cut(s) 8
PleI GAGTC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 222
PpuMI RGGWCCY 1 cut(s) 199
Psp5II RGGWCCY 1 cut(s) 199
Psp6I CCWGG 2 cut(s) 388, 525
PspGI CCWGG 2 cut(s) 388, 525
PspN4I GGNNCC 1 cut(s) 200
PspPI GGNCC 3 cut(s) 31, 199, 469
PspPPI RGGWCCY 1 cut(s) 199
RsaI GTAC 2 cut(s) 164, 262
RsaNI GTAC 2 cut(s) 163, 261
SaqAI TTAA 2 cut(s) 105, 234
SatI GCNGC 1 cut(s) 7
Sau3AI GATC 5 cut(s) 148, 312, 325, 474, 529
Sau96I GGNCC 3 cut(s) 31, 199, 469
ScaI AGTACT 1 cut(s) 262
SchI GAGTC 1 cut(s) 223
ScrFI CCNGG 2 cut(s) 390, 527
SduI GDGCHC 2 cut(s) 83, 297
SetI ASST 8 cut(s) 19, 185, 204, 279, 375, 482, 489, 544
SfaNI GCATC 3 cut(s) 58, 127, 195
SinI GGWCC 1 cut(s) 199
SmlI CTYRAG 1 cut(s) 488
SmoI CTYRAG 1 cut(s) 488
SpeI ACTAGT 1 cut(s) 397
Sse9I AATT 2 cut(s) 340, 351
SspMI CTAG 1 cut(s) 398
StyD4I CCNGG 2 cut(s) 388, 525
StyI CCWWGG 2 cut(s) 202, 441
TaaI ACNGT 1 cut(s) 361
TaqI TCGA 3 cut(s) 282, 405, 532
TasI AATT 2 cut(s) 340, 351
TatI WGTACW 2 cut(s) 162, 260
TfiI GAWTC 2 cut(s) 20, 407
Tru1I TTAA 2 cut(s) 105, 234
Tru9I TTAA 2 cut(s) 105, 234
TscAI CASTG 1 cut(s) 83
TseI GCWGC 1 cut(s) 6
TspDTI ATGAA 1 cut(s) 206
TspRI CASTG 1 cut(s) 83
VneI GTGCAC 1 cut(s) 79
VpaK11BI GGWCC 1 cut(s) 199
XceI RCATGY 2 cut(s) 104, 456
XspI CTAG 1 cut(s) 398
ZrmI AGTACT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.