pycom01g10720

Abscisic acid receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0012791
Physical Location & Seq
Reverse (-)
11529610 .. 11531888
2279 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g10720.3

Sequence Viewer

Length: 555 bp
ATGAGCATCGGCGGCGGCGACTCGGTGGAGGCGGAGTACATAAGGAGGCACCACAGGCACGAGCCCAGAGAGAACCAGTGCACTTCGGCTCTGGTCAGGCACATCAAAGCCCCTGTGCATCTCGTCTGGTCATTGGTGAGGAGATTTGATCAACCCCAGAAGTACAAGCCGTTTGTTAGTCGGTGCACCATGAAGGGGGACCTTGGCATTGGGAGCCTTAGAGAAGTGAATGTTAAATCTGGTCTTCCTGCAACGACAAGCACTGAGAGGCTGGAGCTTCTTGATGATGATGAGCACATTCTTGGCATCAGGATTGTTGGCGGTGATCATAGGCTAAGGAACTACGCTTCAATTATTACCGTCCACCGTGAGGTTATTGAAGGAAGACCAGGGACACTCGTTATTGAATCCTTTGTAGTGGATGTGCCTGATGGGAATACCAAGGATGAGACATGCTACTTTGTTGAGGCTCTGATCCGGTGCAACCTCAAGTCTTTGGCTGATGTCTCAGAGAGGATGGCTGTCCAGGACCGAACCGAACCTATCAATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010427 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023052 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045936 GO:0046983 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0090351 GO:0097305 GO:0097306 GO:0098772 GO:1901700 GO:1901701 GO:1905183
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

185

Amino Acids

20.8

Weight (kDa)

6.45

Isoelectric Point (pI)

52.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012791)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01360
fragaria_vesca FvH4_7g16220
malus_domestica MD01G1078900.v1.1 MD07G1147700.v1.1
prunus_persica Prupe.2G185800_v2.0.a1
pyrus_communis pycom01g10720 pycom07g14670
rosa_chinensis RchiOBHm_Chr1g0359251
rosa_laevigata RLG00000027891
rosa_multiflora Rmu_ssc0000135.1_g000028
rosa_roxburghii Rroxscaffold_4G00297200
rosa_rugosa Rorug01G0268700 Rorug01G0268700
rosa_samantha Rh1AG282700 Rh1BG248900 Rh1CG266800 Rh1DG277900
rosa_wichuraiana Rw1G025090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 48
AciI CCGC 4 cut(s) 12, 15, 32, 321
AclWI GGATC 1 cut(s) 469
AfaI GTAC 2 cut(s) 38, 164
AfiI CCNNNNNNNGG 2 cut(s) 195, 370
AgsI TTSAA 3 cut(s) 351, 380, 407
AjnI CCWGG 2 cut(s) 388, 525
AluBI AGCT 1 cut(s) 277
AluI AGCT 1 cut(s) 277
Alw21I GWGCWC 3 cut(s) 83, 188, 297
Alw26I GTCTC 2 cut(s) 443, 511
Alw44I GTGCAC 2 cut(s) 79, 184
AlwI GGATC 1 cut(s) 469
ApaLI GTGCAC 2 cut(s) 79, 184
AspS9I GGNCC 2 cut(s) 199, 529
AsuHPI GGTGA 2 cut(s) 148, 335
AvaII GGWCC 2 cut(s) 199, 529
BaeGI GKGCMC 2 cut(s) 83, 188
BanI GGYRCC 1 cut(s) 48
BanII GRGCYC 1 cut(s) 66
BauI CACGAG 1 cut(s) 59
BbsI GAAGAC 2 cut(s) 236, 391
Bbv12I GWGCWC 3 cut(s) 83, 188, 297
BccI CCATC 2 cut(s) 425, 511
BceAI ACGGC 1 cut(s) 154
BciT130I CCWGG 2 cut(s) 390, 527
BclI TGATCA 2 cut(s) 148, 325
BcoDI GTCTC 2 cut(s) 443, 511
BisI GCNGC 2 cut(s) 13, 16
BlsI GCNGC 2 cut(s) 14, 17
Bme1390I CCNGG 2 cut(s) 390, 527
Bme18I GGWCC 2 cut(s) 199, 529
BmgT120I GGNCC 2 cut(s) 199, 529
BmiI GGNNCC 3 cut(s) 50, 200, 215
BmrFI CCNGG 2 cut(s) 390, 527
BmsI GCATC 3 cut(s) 15, 127, 315
BpiI GAAGAC 2 cut(s) 236, 391
BpmI CTGGAG 1 cut(s) 293
Bpu10I CCTNAGC 1 cut(s) 335
BpuEI CTTGAG 1 cut(s) 473
BsaJI CCNNGG 3 cut(s) 202, 389, 441
BsaWI WCCGGW 1 cut(s) 477
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bsc4I CCNNNNNNNGG 2 cut(s) 195, 370
Bse1I ACTGG 1 cut(s) 76
BseBI CCWGG 2 cut(s) 390, 527
BseDI CCNNGG 3 cut(s) 202, 389, 441
BseGI GGATG 3 cut(s) 427, 451, 522
BseLI CCNNNNNNNGG 2 cut(s) 195, 370
BseMII CTCAG 2 cut(s) 255, 522
BseNI ACTGG 1 cut(s) 76
BseRI GAGGAG 1 cut(s) 154
BseSI GKGCMC 2 cut(s) 83, 188
BshNI GGYRCC 1 cut(s) 48
BsiHKAI GWGCWC 3 cut(s) 83, 188, 297
BsiSI CCGG 1 cut(s) 478
BslFI GGGAC 2 cut(s) 212, 406
BslI CCNNNNNNNGG 2 cut(s) 195, 370
BsmAI GTCTC 2 cut(s) 443, 511
BsmFI GGGAC 2 cut(s) 212, 406
Bsp1286I GDGCHC 4 cut(s) 66, 83, 188, 297
Bsp143I GATC 3 cut(s) 148, 325, 474
BspACI CCGC 4 cut(s) 12, 15, 32, 321
BspCNI CTCAG 2 cut(s) 256, 521
BspLI GGNNCC 3 cut(s) 50, 200, 215
BspPI GGATC 1 cut(s) 469
BspT107I GGYRCC 1 cut(s) 48
BsrI ACTGG 1 cut(s) 76
BssECI CCNNGG 3 cut(s) 202, 389, 441
BssMI GATC 3 cut(s) 148, 325, 474
BssSI CACGAG 1 cut(s) 59
BssT1I CCWWGG 2 cut(s) 202, 441
Bst2BI CACGAG 1 cut(s) 59
Bst2UI CCWGG 2 cut(s) 390, 527
Bst4CI ACNGT 2 cut(s) 361, 368
BstDEI CTNAG 4 cut(s) 218, 264, 335, 508
BstF5I GGATG 3 cut(s) 427, 451, 522
BstKTI GATC 3 cut(s) 151, 328, 477
BstMAI GTCTC 2 cut(s) 443, 511
BstMBI GATC 3 cut(s) 148, 325, 474
BstMWI GCNNNNNNNGC 3 cut(s) 12, 55, 213
BstNI CCWGG 2 cut(s) 390, 527
BstNSI RCATGY 1 cut(s) 456
BstSCI CCNGG 2 cut(s) 388, 525
BstSLI GKGCMC 2 cut(s) 83, 188
BstV2I GAAGAC 2 cut(s) 236, 391
BtsCI GGATG 3 cut(s) 427, 451, 522
BtsIMutI CAGTG 2 cut(s) 83, 261
Cfr13I GGNCC 2 cut(s) 199, 529
Csp6I GTAC 2 cut(s) 37, 163
CviAII CATG 2 cut(s) 190, 453
CviQI GTAC 2 cut(s) 37, 163
DdeI CTNAG 4 cut(s) 218, 264, 335, 508
DpnI GATC 3 cut(s) 150, 327, 476
DpnII GATC 3 cut(s) 148, 325, 474
EciI GGCGGA 1 cut(s) 47
Eco130I CCWWGG 2 cut(s) 202, 441
Eco24I GRGCYC 1 cut(s) 66
Eco47I GGWCC 2 cut(s) 199, 529
EcoO109I RGGNCCY 1 cut(s) 199
EcoRII CCWGG 2 cut(s) 388, 525
EcoT14I CCWWGG 2 cut(s) 202, 441
EcoT38I GRGCYC 1 cut(s) 66
ErhI CCWWGG 2 cut(s) 202, 441
FaeI CATG 2 cut(s) 193, 456
FaiI YATR 4 cut(s) 41, 191, 330, 454
FaqI GGGAC 2 cut(s) 212, 406
FatI CATG 2 cut(s) 189, 452
FbaI TGATCA 2 cut(s) 148, 325
Fnu4HI GCNGC 2 cut(s) 13, 16
FokI GGATG 3 cut(s) 434, 458, 529
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 2 cut(s) 13, 16
GluI GCNGC 2 cut(s) 13, 16
GsuI CTGGAG 1 cut(s) 293
HapII CCGG 1 cut(s) 478
Hin1II CATG 2 cut(s) 193, 456
HinfI GANTC 2 cut(s) 20, 407
HpaII CCGG 1 cut(s) 478
HphI GGTGA 2 cut(s) 148, 335
Hpy166II GTNNAC 3 cut(s) 81, 186, 364
Hpy188I TCNGA 2 cut(s) 474, 511
Hpy188III TCNNGA 2 cut(s) 281, 310
Hpy8I GTNNAC 3 cut(s) 81, 186, 364
HpyAV CCTTC 2 cut(s) 187, 374
HpyCH4III ACNGT 2 cut(s) 361, 368
HpyCH4V TGCA 5 cut(s) 81, 118, 186, 251, 483
HpyF10VI GCNNNNNNNGC 3 cut(s) 12, 55, 213
HpyF3I CTNAG 4 cut(s) 218, 264, 335, 508
Hsp92II CATG 2 cut(s) 193, 456
Ksp22I TGATCA 2 cut(s) 148, 325
Kzo9I GATC 3 cut(s) 148, 325, 474
LmnI GCTCC 2 cut(s) 213, 274
LweI GCATC 3 cut(s) 15, 127, 315
MalI GATC 3 cut(s) 150, 327, 476
MboI GATC 3 cut(s) 148, 325, 474
MboII GAAGA 2 cut(s) 236, 396
MhlI GDGCHC 4 cut(s) 66, 83, 188, 297
MluCI AATT 1 cut(s) 351
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 8 cut(s) 22, 39, 132, 261, 364, 460, 497, 507
MseI TTAA 1 cut(s) 234
MspI CCGG 1 cut(s) 478
MspR9I CCNGG 2 cut(s) 390, 527
MvaI CCWGG 2 cut(s) 390, 527
MwoI GCNNNNNNNGC 3 cut(s) 12, 55, 213
NdeII GATC 3 cut(s) 148, 325, 474
NlaIII CATG 2 cut(s) 193, 456
NlaIV GGNNCC 3 cut(s) 50, 200, 215
NspI RCATGY 1 cut(s) 456
PcsI WCGNNNNNNNCGW 1 cut(s) 15
PfeI GAWTC 1 cut(s) 407
PfoI TCCNGGA 1 cut(s) 525
PkrI GCNGC 2 cut(s) 14, 17
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
PpuMI RGGWCCY 1 cut(s) 199
Psp5II RGGWCCY 1 cut(s) 199
Psp6I CCWGG 2 cut(s) 388, 525
PspGI CCWGG 2 cut(s) 388, 525
PspN4I GGNNCC 3 cut(s) 50, 200, 215
PspPI GGNCC 2 cut(s) 199, 529
PspPPI RGGWCCY 1 cut(s) 199
RsaI GTAC 2 cut(s) 38, 164
RsaNI GTAC 2 cut(s) 37, 163
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 2 cut(s) 13, 16
Sau3AI GATC 3 cut(s) 148, 325, 474
Sau96I GGNCC 2 cut(s) 199, 529
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 2 cut(s) 390, 527
SduI GDGCHC 4 cut(s) 66, 83, 188, 297
SetI ASST 5 cut(s) 204, 279, 375, 489, 544
SfaNI GCATC 3 cut(s) 15, 127, 315
SinI GGWCC 2 cut(s) 199, 529
SmlI CTYRAG 1 cut(s) 488
SmoI CTYRAG 1 cut(s) 488
Sse9I AATT 1 cut(s) 351
SsiI CCGC 4 cut(s) 12, 15, 32, 321
StyD4I CCNGG 2 cut(s) 388, 525
StyI CCWWGG 2 cut(s) 202, 441
TaaI ACNGT 2 cut(s) 361, 368
TaqII GACCGA 1 cut(s) 546
TasI AATT 1 cut(s) 351
TatI WGTACW 2 cut(s) 36, 162
TauI GCSGC 2 cut(s) 15, 18
TfiI GAWTC 1 cut(s) 407
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TscAI CASTG 2 cut(s) 83, 268
TspDTI ATGAA 1 cut(s) 206
TspRI CASTG 2 cut(s) 83, 268
VneI GTGCAC 2 cut(s) 79, 184
VpaK11BI GGWCC 2 cut(s) 199, 529
XceI RCATGY 1 cut(s) 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.