pycom07g14670

Abscisic acid receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0012791
Physical Location & Seq
Reverse (-)
16680214 .. 16682250
2037 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g14670.1

Sequence Viewer

Length: 555 bp
ATGAGCAGCGGCGGCGGTGATTCGATGGAGGCGGAGTACATACGGAGGCACCACAGGCACGAGCCCAGAGAGAACCAGTGTACTTCGGCTCTGGTCAGGCACATCAAAGCCCCTGTGCATCTCGTGTGGTCATTGGTGAGGAGCTTCGATCAGCCCCAGAAGTACAAGCCGTTTGTTAGTCGGTGCACCATGAAGGGGGACCTTGGCATTGGGAGCGTTAGAGAGGTGAATGTTAAATCTGGGCTGCCCGCAACGACCAGCACTGAGAGGCTGGAGCTTCTTGATGATGATGAGCACATTCTTGGAATCAAGATTGTTGGCGGTGATCATAGGCTAAGGAACTACGCTTCAATTATTACTGTACACCCTGAGGTTATTGAAGGAAGACCGGGGACACTTGTTATTGAATCCTTTGTGGTGGATGTGCCTGAGGGGAATACCAATGATGAGACATGCTACTTTGTTGAGGCCCTGATCCGGTGCAACTTCAAGTCTTTGGCTGATGTCTCAGAGAGGATGGCTGTCCAGGACCGAACTGAACCTATCAATCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010427 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023052 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045936 GO:0046983 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0090351 GO:0097305 GO:0097306 GO:0098772 GO:1901700 GO:1901701 GO:1905183
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

185

Amino Acids

20.68

Weight (kDa)

5.98

Isoelectric Point (pI)

51.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 31 - 171 2.9e-20 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012791)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01360
fragaria_vesca FvH4_7g16220
malus_domestica MD01G1078900.v1.1 MD07G1147700.v1.1
prunus_persica Prupe.2G185800_v2.0.a1
pyrus_communis pycom01g10720 pycom07g14670
rosa_chinensis RchiOBHm_Chr1g0359251
rosa_laevigata RLG00000027891
rosa_multiflora Rmu_ssc0000135.1_g000028
rosa_roxburghii Rroxscaffold_4G00297200
rosa_rugosa Rorug01G0268700 Rorug01G0268700
rosa_samantha Rh1AG282700 Rh1BG248900 Rh1CG266800 Rh1DG277900
rosa_wichuraiana Rw1G025090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 48
AciI CCGC 6 cut(s) 9, 12, 15, 32, 249, 321
AclWI GGATC 1 cut(s) 469
AfaI GTAC 4 cut(s) 38, 82, 164, 363
AfiI CCNNNNNNNGG 2 cut(s) 195, 477
AgsI TTSAA 4 cut(s) 351, 380, 407, 490
AjnI CCWGG 1 cut(s) 525
AluBI AGCT 2 cut(s) 144, 277
AluI AGCT 2 cut(s) 144, 277
Alw21I GWGCWC 2 cut(s) 188, 297
Alw26I GTCTC 2 cut(s) 443, 511
Alw44I GTGCAC 1 cut(s) 184
AlwI GGATC 1 cut(s) 469
AoxI GGCC 1 cut(s) 468
ApaLI GTGCAC 1 cut(s) 184
ApeKI GCWGC 2 cut(s) 6, 244
AspS9I GGNCC 3 cut(s) 199, 469, 529
AsuC2I CCSGG 1 cut(s) 390
AsuHPI GGTGA 4 cut(s) 29, 148, 238, 335
AvaII GGWCC 2 cut(s) 199, 529
AxyI CCTNAGG 2 cut(s) 369, 429
BaeGI GKGCMC 1 cut(s) 188
BanI GGYRCC 1 cut(s) 48
BanII GRGCYC 1 cut(s) 66
BauI CACGAG 2 cut(s) 59, 122
BbsI GAAGAC 1 cut(s) 391
Bbv12I GWGCWC 2 cut(s) 188, 297
BbvI GCAGC 2 cut(s) 18, 231
BccI CCATC 2 cut(s) 19, 511
BceAI ACGGC 1 cut(s) 154
BciT130I CCWGG 1 cut(s) 527
BclI TGATCA 1 cut(s) 325
BcnI CCSGG 1 cut(s) 390
BcoDI GTCTC 2 cut(s) 443, 511
BisI GCNGC 4 cut(s) 7, 10, 13, 245
BlsI GCNGC 4 cut(s) 8, 11, 14, 246
Bme1390I CCNGG 2 cut(s) 390, 527
Bme18I GGWCC 2 cut(s) 199, 529
BmgT120I GGNCC 3 cut(s) 199, 469, 529
BmiI GGNNCC 2 cut(s) 50, 200
BmrFI CCNGG 2 cut(s) 390, 527
BmsI GCATC 1 cut(s) 127
BpiI GAAGAC 1 cut(s) 391
BpmI CTGGAG 1 cut(s) 293
Bpu10I CCTNAGC 1 cut(s) 335
BpuMI CCSGG 1 cut(s) 390
BsaJI CCNNGG 2 cut(s) 202, 389
BsaWI WCCGGW 1 cut(s) 477
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bsc4I CCNNNNNNNGG 2 cut(s) 195, 477
Bse1I ACTGG 1 cut(s) 76
Bse21I CCTNAGG 2 cut(s) 369, 429
BseBI CCWGG 1 cut(s) 527
BseDI CCNNGG 2 cut(s) 202, 389
BseGI GGATG 2 cut(s) 427, 522
BseLI CCNNNNNNNGG 2 cut(s) 195, 477
BseMII CTCAG 4 cut(s) 255, 360, 420, 522
BseNI ACTGG 1 cut(s) 76
BseRI GAGGAG 1 cut(s) 154
BseSI GKGCMC 1 cut(s) 188
BseXI GCAGC 2 cut(s) 18, 231
BshFI GGCC 1 cut(s) 470
BshNI GGYRCC 1 cut(s) 48
BsiHKAI GWGCWC 2 cut(s) 188, 297
BsiSI CCGG 2 cut(s) 389, 478
BslFI GGGAC 2 cut(s) 212, 406
BslI CCNNNNNNNGG 2 cut(s) 195, 477
BsmAI GTCTC 2 cut(s) 443, 511
BsmFI GGGAC 2 cut(s) 212, 406
BsnI GGCC 1 cut(s) 470
Bsp1286I GDGCHC 3 cut(s) 66, 188, 297
Bsp1407I TGTACA 1 cut(s) 361
Bsp143I GATC 3 cut(s) 148, 325, 474
BspACI CCGC 6 cut(s) 9, 12, 15, 32, 249, 321
BspANI GGCC 1 cut(s) 470
BspCNI CTCAG 4 cut(s) 256, 361, 421, 521
BspLI GGNNCC 2 cut(s) 50, 200
BspPI GGATC 1 cut(s) 469
BspT107I GGYRCC 1 cut(s) 48
BsrGI TGTACA 1 cut(s) 361
BsrI ACTGG 1 cut(s) 76
BssECI CCNNGG 2 cut(s) 202, 389
BssMI GATC 3 cut(s) 148, 325, 474
BssSI CACGAG 2 cut(s) 59, 122
BssT1I CCWWGG 1 cut(s) 202
Bst2BI CACGAG 2 cut(s) 59, 122
Bst2UI CCWGG 1 cut(s) 527
Bst4CI ACNGT 1 cut(s) 361
BstAUI TGTACA 1 cut(s) 361
BstC8I GCNNGC 1 cut(s) 249
BstDEI CTNAG 5 cut(s) 264, 335, 369, 429, 508
BstF5I GGATG 2 cut(s) 427, 522
BstKTI GATC 3 cut(s) 151, 328, 477
BstMAI GTCTC 2 cut(s) 443, 511
BstMBI GATC 3 cut(s) 148, 325, 474
BstMWI GCNNNNNNNGC 3 cut(s) 12, 55, 213
BstNI CCWGG 1 cut(s) 527
BstNSI RCATGY 1 cut(s) 456
BstSCI CCNGG 2 cut(s) 388, 525
BstSLI GKGCMC 1 cut(s) 188
BstV1I GCAGC 2 cut(s) 18, 231
BstV2I GAAGAC 1 cut(s) 391
Bsu36I CCTNAGG 2 cut(s) 369, 429
BsuRI GGCC 1 cut(s) 470
BtsCI GGATG 2 cut(s) 427, 522
BtsIMutI CAGTG 2 cut(s) 83, 261
Cac8I GCNNGC 1 cut(s) 249
Cfr13I GGNCC 3 cut(s) 199, 469, 529
Csp6I GTAC 4 cut(s) 37, 81, 163, 362
CviAII CATG 2 cut(s) 190, 453
CviQI GTAC 4 cut(s) 37, 81, 163, 362
DdeI CTNAG 5 cut(s) 264, 335, 369, 429, 508
DpnI GATC 3 cut(s) 150, 327, 476
DpnII GATC 3 cut(s) 148, 325, 474
EciI GGCGGA 1 cut(s) 47
Eco130I CCWWGG 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 66
Eco47I GGWCC 2 cut(s) 199, 529
Eco81I CCTNAGG 2 cut(s) 369, 429
EcoO109I RGGNCCY 2 cut(s) 199, 469
EcoRII CCWGG 1 cut(s) 525
EcoT14I CCWWGG 1 cut(s) 202
EcoT38I GRGCYC 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 202
FaeI CATG 2 cut(s) 193, 456
FaiI YATR 4 cut(s) 41, 191, 330, 454
FaqI GGGAC 2 cut(s) 212, 406
FatI CATG 2 cut(s) 189, 452
FauI CCCGC 1 cut(s) 256
FbaI TGATCA 1 cut(s) 325
Fnu4HI GCNGC 4 cut(s) 7, 10, 13, 245
FokI GGATG 2 cut(s) 434, 529
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 4 cut(s) 7, 10, 13, 245
GluI GCNGC 4 cut(s) 7, 10, 13, 245
GsuI CTGGAG 1 cut(s) 293
HaeIII GGCC 1 cut(s) 470
HapII CCGG 2 cut(s) 389, 478
Hin1II CATG 2 cut(s) 193, 456
HinfI GANTC 3 cut(s) 20, 306, 407
HpaII CCGG 2 cut(s) 389, 478
HphI GGTGA 4 cut(s) 29, 148, 238, 335
Hpy166II GTNNAC 3 cut(s) 81, 186, 364
Hpy188I TCNGA 1 cut(s) 511
Hpy188III TCNNGA 2 cut(s) 281, 310
Hpy8I GTNNAC 3 cut(s) 81, 186, 364
HpyAV CCTTC 2 cut(s) 187, 374
HpyCH4III ACNGT 1 cut(s) 361
HpyCH4V TGCA 3 cut(s) 118, 186, 483
HpyF10VI GCNNNNNNNGC 3 cut(s) 12, 55, 213
HpyF3I CTNAG 5 cut(s) 264, 335, 369, 429, 508
Hsp92II CATG 2 cut(s) 193, 456
Ksp22I TGATCA 1 cut(s) 325
Kzo9I GATC 3 cut(s) 148, 325, 474
LmnI GCTCC 3 cut(s) 141, 213, 274
Lsp1109I GCAGC 2 cut(s) 18, 231
LweI GCATC 1 cut(s) 127
MalI GATC 3 cut(s) 150, 327, 476
MboI GATC 3 cut(s) 148, 325, 474
MboII GAAGA 1 cut(s) 396
MhlI GDGCHC 3 cut(s) 66, 188, 297
MluCI AATT 1 cut(s) 351
MnlI CCTC 9 cut(s) 22, 39, 132, 217, 261, 364, 424, 460, 507
MseI TTAA 1 cut(s) 234
MspA1I CMGCKG 1 cut(s) 9
MspI CCGG 2 cut(s) 389, 478
MspR9I CCNGG 2 cut(s) 390, 527
MvaI CCWGG 1 cut(s) 527
MwoI GCNNNNNNNGC 3 cut(s) 12, 55, 213
NciI CCSGG 1 cut(s) 390
NdeII GATC 3 cut(s) 148, 325, 474
NlaIII CATG 2 cut(s) 193, 456
NlaIV GGNNCC 2 cut(s) 50, 200
NspI RCATGY 1 cut(s) 456
PfeI GAWTC 3 cut(s) 20, 306, 407
PfoI TCCNGGA 1 cut(s) 525
PkrI GCNGC 4 cut(s) 8, 11, 14, 246
PpuMI RGGWCCY 1 cut(s) 199
Psp5II RGGWCCY 1 cut(s) 199
Psp6I CCWGG 1 cut(s) 525
PspGI CCWGG 1 cut(s) 525
PspN4I GGNNCC 2 cut(s) 50, 200
PspPI GGNCC 3 cut(s) 199, 469, 529
PspPPI RGGWCCY 1 cut(s) 199
RsaI GTAC 4 cut(s) 38, 82, 164, 363
RsaNI GTAC 4 cut(s) 37, 81, 163, 362
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 4 cut(s) 7, 10, 13, 245
Sau3AI GATC 3 cut(s) 148, 325, 474
Sau96I GGNCC 3 cut(s) 199, 469, 529
ScrFI CCNGG 2 cut(s) 390, 527
SduI GDGCHC 3 cut(s) 66, 188, 297
SetI ASST 6 cut(s) 146, 204, 228, 279, 375, 544
SfaNI GCATC 1 cut(s) 127
SinI GGWCC 2 cut(s) 199, 529
Sse9I AATT 1 cut(s) 351
SsiI CCGC 6 cut(s) 9, 12, 15, 32, 249, 321
StyD4I CCNGG 2 cut(s) 388, 525
StyI CCWWGG 1 cut(s) 202
TaaI ACNGT 1 cut(s) 361
TaqI TCGA 2 cut(s) 23, 147
TaqII GACCGA 1 cut(s) 546
TasI AATT 1 cut(s) 351
TatI WGTACW 4 cut(s) 36, 80, 162, 361
TauI GCSGC 2 cut(s) 12, 15
TfiI GAWTC 3 cut(s) 20, 306, 407
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TscAI CASTG 2 cut(s) 83, 268
TseI GCWGC 2 cut(s) 6, 244
TspDTI ATGAA 1 cut(s) 206
TspGWI ACGGA 1 cut(s) 58
TspRI CASTG 2 cut(s) 83, 268
VneI GTGCAC 1 cut(s) 184
VpaK11BI GGWCC 2 cut(s) 199, 529
XceI RCATGY 1 cut(s) 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.