Rw1G025090

Abscisic acid receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0012791
Physical Location & Seq
Reverse (-)
51716132 .. 51719320
3189 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G025090.1

Sequence Viewer

Length: 366 bp
ATGAAGGGGGACCTTGGCATTGGGAGTCTTAGAGAAGTGAATGTTAAATCTGGGCTTCCAGCAACAACCAGCACTGAGAGGCTGGAGCTTCTCGATGACGACGAGCACATTCTTGGCATCAGGATCGTTGGTGGTGATCATAGGCTCAGGAATTACTCTTCAATTATTACCGTCCATCCTGAGGTTATAGATGGGAGACCAGGGACACTAGTTATCGAATCCTTTGTGGTGGATGTGCCTGATGGAAATACCAAGGATGAGACATGCTACTTTGTTGAGGCCCTGATCAGGTGCAACCTCAAGTCTTTGGCTGATGTCTCGGAGAGGATGGCTGTCCAGGATCGAACAGAACCTATCAATCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010427 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023052 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045936 GO:0046983 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0090351 GO:0097305 GO:0097306 GO:0098772 GO:1901700 GO:1901701 GO:1905183
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

121

Amino Acids

13.35

Weight (kDa)

4.86

Isoelectric Point (pI)

33.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 10 - 108 2.3e-10 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012791)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01360
fragaria_vesca FvH4_7g16220
malus_domestica MD01G1078900.v1.1 MD07G1147700.v1.1
prunus_persica Prupe.2G185800_v2.0.a1
pyrus_communis pycom01g10720 pycom07g14670
rosa_chinensis RchiOBHm_Chr1g0359251
rosa_laevigata RLG00000027891
rosa_multiflora Rmu_ssc0000135.1_g000028
rosa_roxburghii Rroxscaffold_4G00297200
rosa_rugosa Rorug01G0268700 Rorug01G0268700
rosa_samantha Rh1AG282700 Rh1BG248900 Rh1CG266800 Rh1DG277900
rosa_wichuraiana Rw1G025090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 131, 348
AfiI CCNNNNNNNGG 2 cut(s) 181, 288
AgsI TTSAA 1 cut(s) 162
AhlI ACTAGT 1 cut(s) 208
AjnI CCWGG 2 cut(s) 199, 336
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
Alw21I GWGCWC 1 cut(s) 108
Alw26I GTCTC 3 cut(s) 190, 254, 322
AlwI GGATC 2 cut(s) 131, 348
AoxI GGCC 1 cut(s) 279
AspS9I GGNCC 2 cut(s) 10, 280
AsuHPI GGTGA 1 cut(s) 146
AvaII GGWCC 1 cut(s) 10
AxyI CCTNAGG 1 cut(s) 180
Bbv12I GWGCWC 1 cut(s) 108
BccI CCATC 4 cut(s) 183, 185, 236, 322
BcgI CGANNNNNNTGC 2 cut(s) 106, 140
BciT130I CCWGG 2 cut(s) 201, 338
BclI TGATCA 2 cut(s) 136, 285
BcoDI GTCTC 3 cut(s) 190, 254, 322
BcuI ACTAGT 1 cut(s) 208
BfaI CTAG 1 cut(s) 209
Bme1390I CCNGG 2 cut(s) 201, 338
Bme18I GGWCC 1 cut(s) 10
BmgT120I GGNCC 2 cut(s) 10, 280
BmiI GGNNCC 1 cut(s) 11
BmrFI CCNGG 2 cut(s) 201, 338
BmsI GCATC 1 cut(s) 126
BpmI CTGGAG 1 cut(s) 104
Bpu10I CCTNAGC 1 cut(s) 146
BpuEI CTTGAG 1 cut(s) 284
BsaI GGTCTC 1 cut(s) 190
BsaJI CCNNGG 3 cut(s) 13, 200, 252
Bsc4I CCNNNNNNNGG 2 cut(s) 181, 288
Bse21I CCTNAGG 1 cut(s) 180
BseBI CCWGG 2 cut(s) 201, 338
BseDI CCNNGG 3 cut(s) 13, 200, 252
BseGI GGATG 4 cut(s) 175, 238, 262, 333
BseLI CCNNNNNNNGG 2 cut(s) 181, 288
BseMII CTCAG 3 cut(s) 66, 160, 171
BshFI GGCC 1 cut(s) 281
BsiHKAI GWGCWC 1 cut(s) 108
BslFI GGGAC 2 cut(s) 23, 217
BslI CCNNNNNNNGG 2 cut(s) 181, 288
BsmAI GTCTC 3 cut(s) 190, 254, 322
BsmFI GGGAC 2 cut(s) 23, 217
BsnI GGCC 1 cut(s) 281
Bso31I GGTCTC 1 cut(s) 190
Bsp1286I GDGCHC 1 cut(s) 108
Bsp143I GATC 4 cut(s) 123, 136, 285, 340
BspANI GGCC 1 cut(s) 281
BspCNI CTCAG 3 cut(s) 67, 159, 172
BspLI GGNNCC 1 cut(s) 11
BspPI GGATC 2 cut(s) 131, 348
BspTNI GGTCTC 1 cut(s) 190
BssECI CCNNGG 3 cut(s) 13, 200, 252
BssMI GATC 4 cut(s) 123, 136, 285, 340
BssT1I CCWWGG 2 cut(s) 13, 252
Bst2UI CCWGG 2 cut(s) 201, 338
Bst4CI ACNGT 1 cut(s) 172
Bst6I CTCTTC 1 cut(s) 163
BstDEI CTNAG 4 cut(s) 29, 75, 146, 180
BstF5I GGATG 4 cut(s) 175, 238, 262, 333
BstKTI GATC 4 cut(s) 126, 139, 288, 343
BstMAI GTCTC 3 cut(s) 190, 254, 322
BstMBI GATC 4 cut(s) 123, 136, 285, 340
BstNI CCWGG 2 cut(s) 201, 338
BstNSI RCATGY 1 cut(s) 267
BstSCI CCNGG 2 cut(s) 199, 336
Bsu36I CCTNAGG 1 cut(s) 180
BsuRI GGCC 1 cut(s) 281
BtsCI GGATG 4 cut(s) 175, 238, 262, 333
BtsIMutI CAGTG 1 cut(s) 72
Cfr13I GGNCC 2 cut(s) 10, 280
CviAII CATG 1 cut(s) 264
CviJI RGCY 7 cut(s) 55, 82, 88, 145, 281, 311, 332
CviKI_1 RGCY 7 cut(s) 55, 82, 88, 145, 281, 311, 332
DdeI CTNAG 4 cut(s) 29, 75, 146, 180
DpnI GATC 4 cut(s) 125, 138, 287, 342
DpnII GATC 4 cut(s) 123, 136, 285, 340
Eam1104I CTCTTC 1 cut(s) 163
EarI CTCTTC 1 cut(s) 163
Eco130I CCWWGG 2 cut(s) 13, 252
Eco31I GGTCTC 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 10
Eco81I CCTNAGG 1 cut(s) 180
EcoO109I RGGNCCY 2 cut(s) 10, 280
EcoRII CCWGG 2 cut(s) 199, 336
EcoT14I CCWWGG 2 cut(s) 13, 252
ErhI CCWWGG 2 cut(s) 13, 252
FaeI CATG 1 cut(s) 267
FaiI YATR 3 cut(s) 141, 188, 265
FaqI GGGAC 2 cut(s) 23, 217
FatI CATG 1 cut(s) 263
FbaI TGATCA 2 cut(s) 136, 285
FokI GGATG 4 cut(s) 162, 245, 269, 340
FspBI CTAG 1 cut(s) 209
GsuI CTGGAG 1 cut(s) 104
HaeIII GGCC 1 cut(s) 281
Hin1II CATG 1 cut(s) 267
HinfI GANTC 2 cut(s) 25, 218
HphI GGTGA 1 cut(s) 146
Hpy188I TCNGA 1 cut(s) 322
Hpy188III TCNNGA 4 cut(s) 92, 121, 148, 179
Hpy99I CGWCG 1 cut(s) 104
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4V TGCA 1 cut(s) 294
HpyF3I CTNAG 4 cut(s) 29, 75, 146, 180
Hsp92II CATG 1 cut(s) 267
Ksp22I TGATCA 2 cut(s) 136, 285
Kzo9I GATC 4 cut(s) 123, 136, 285, 340
LmnI GCTCC 1 cut(s) 85
LweI GCATC 1 cut(s) 126
MaeI CTAG 1 cut(s) 209
MalI GATC 4 cut(s) 125, 138, 287, 342
MboI GATC 4 cut(s) 123, 136, 285, 340
MboII GAAGA 1 cut(s) 150
MhlI GDGCHC 1 cut(s) 108
MluCI AATT 2 cut(s) 151, 162
MlyI GAGTC 1 cut(s) 34
MnlI CCTC 5 cut(s) 72, 175, 271, 308, 318
MseI TTAA 1 cut(s) 45
MspR9I CCNGG 2 cut(s) 201, 338
MvaI CCWGG 2 cut(s) 201, 338
NdeII GATC 4 cut(s) 123, 136, 285, 340
NlaIII CATG 1 cut(s) 267
NlaIV GGNNCC 1 cut(s) 11
NspI RCATGY 1 cut(s) 267
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PfeI GAWTC 1 cut(s) 218
PfoI TCCNGGA 1 cut(s) 336
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
PpuMI RGGWCCY 1 cut(s) 10
Psp5II RGGWCCY 1 cut(s) 10
Psp6I CCWGG 2 cut(s) 199, 336
PspGI CCWGG 2 cut(s) 199, 336
PspN4I GGNNCC 1 cut(s) 11
PspPI GGNCC 2 cut(s) 10, 280
PspPPI RGGWCCY 1 cut(s) 10
SaqAI TTAA 1 cut(s) 45
Sau3AI GATC 4 cut(s) 123, 136, 285, 340
Sau96I GGNCC 2 cut(s) 10, 280
SchI GAGTC 1 cut(s) 34
ScrFI CCNGG 2 cut(s) 201, 338
SduI GDGCHC 1 cut(s) 108
SetI ASST 6 cut(s) 15, 90, 186, 293, 300, 355
SfaNI GCATC 1 cut(s) 126
SinI GGWCC 1 cut(s) 10
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
SpeI ACTAGT 1 cut(s) 208
Sse9I AATT 2 cut(s) 151, 162
SspMI CTAG 1 cut(s) 209
StyD4I CCNGG 2 cut(s) 199, 336
StyI CCWWGG 2 cut(s) 13, 252
TaaI ACNGT 1 cut(s) 172
TaqI TCGA 3 cut(s) 93, 216, 343
TasI AATT 2 cut(s) 151, 162
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 1 cut(s) 79
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 79
VpaK11BI GGWCC 1 cut(s) 10
XceI RCATGY 1 cut(s) 267
XspI CTAG 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.