Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015116

Physical Location & Seq

Genomic Coordinates Forward (+)

195645 .. 198787

Gene Structure 3143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G01540.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGTCGGTGTACGACGCTGCTTTCCTTAATACAGAGCTTTCGAAACCGACATCGATTTTTGGTCTCCGGCTATGGGTCGTGATCGGAATCTTACTTGGATCTCTAATTGTCATCGCACTCTTTCTTCTCTCCCTCTGCTTAACTTCTCGCCGGAAAAATCGAAAGCCGAGAGCCGATTTCGCCTCCGCCGCCATCGCTACACCGCCGATTTCAAAGGAGATTAAAGAGATCGTTCCGGCGCAGAATCAGTCTGTTCCGGCGGAGATCCAGGTCGATATCGGGAAGATCGAGCATCGAGTGGTGTTTTCAGATCGAGTGTCGAGTGGTGAGAGTAGAGGAACAGCGAGTGCAAGTGAAACGGCGTCGTATTCCGGTAGCGGGAATTGTGGGCCGGAGGTGTCGCATCTTGGATGGGGCCGATGGTATACTCTGAGAGAGCTTGAAGCGGCCACGAATGGGCTTTGTGAAGAGAATGTAATCGGAGAAGGTGGTTACGGGATTGTGTATCGTGGCATTTTAACTGATGGAACCAAAGTCGCCGTCAAGAACTTGCTTAACAATAGGGGTCAAGCAGAGAAGGAATTCAAAGTAGAAGTGGAAGTCATTGGGCGAGTACGACACAAGAATCTTGTTAGGCTTTTAGGGTATTGCGTGGAAGGTGCATACAGGATGCTCGTGTATGACTTTGTCGACAATGGTAATTTGGAGCAATGGATTCACGGTGATGTTGGCGATGTCAGCCCGCTAACTTGGGATATACGTATGAATATTATACTGGGGATGGCCAAAGGATTGGCGTATCTACACGAGGGTCTTGAGCCAAAAGTTGTTCATCGGGATATTAAATCAAGCAATATCTTACTTGATCGCCAATGGAATGCTAAGGTTTCGGATTTTGGACTTGCTAAGCTCTTGGGGTCTGAGAGCAGTTATGTGACTACTCGTGTGATGGGAACTTTCGGTTATGTAGCACCAGAATACGCTTGCACCGGAATGTTAAACGAGAAGAGTGATATCTATAGCTTCGGAATACTAATCATGGAGATAATCACTGGAAGAAACCCGGTTGATTATAGTCGGCCTCAAGGAGAGGTATTTGATAAGCATATTCAATCCTCTCTATGTTTTTGTAAATGGTCTTACTATGTGTCGTGGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

386

Amino Acids

42.77

Weight (kDa)

6.67

Isoelectric Point (pI)

33.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	157 - 425	2.3e-46	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	157 - 423	5.7e-46	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01540 AT1G01540 AT4G01330 AT4G01330 AT4G01330
fragaria_vesca	FvH4_7g15080
malus_domestica	MD00G1111700.v1.1 MD01G1069300.v1.1
prunus_persica	Prupe.2G175400_v2.0.a1
pyrus_communis	pycom01g09870
rosa_chinensis	RchiOBHm_Chr1g0357191
rosa_laevigata	RLG00000028045
rosa_multiflora	Rmu_sc0005967.1_g000006
rosa_rugosa	Rorug01G0254800
rosa_samantha	Rh1BG236900
rosa_wichuraiana	Rw1G023740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	425, 690
AciI	CCGC	7 cut(s)	186, 189, 203, 260, 378, 446, 743
AclWI	GGATC	2 cut(s)	106, 259
AcoI	YGGCCR	2 cut(s)	447, 783
AcsI	RAATTY	1 cut(s)	581
AcyI	GRCGYC	1 cut(s)	362
AfaI	GTAC	2 cut(s)	11, 615
AfiI	CCNNNNNNNGG	3 cut(s)	73, 378, 456
AgsI	TTSAA	4 cut(s)	213, 443, 586, 1112
AjnI	CCWGG	1 cut(s)	267
AluBI	AGCT	4 cut(s)	37, 439, 910, 1023
AluI	AGCT	4 cut(s)	37, 439, 910, 1023
Alw26I	GTCTC	1 cut(s)	68
AlwI	GGATC	2 cut(s)	106, 259
AoxI	GGCC	5 cut(s)	389, 415, 447, 783, 1079
ApeKI	GCWGC	1 cut(s)	17
ApoI	RAATTY	1 cut(s)	581
ArsI	GACNNNNNNTTYG	2 cut(s)	525, 557
Asp700I	GAANNNNTTC	1 cut(s)	581
AspLEI	GCGC	1 cut(s)	241
AspS9I	GGNCC	2 cut(s)	389, 415
AsuC2I	CCSGG	1 cut(s)	1064
AsuHPI	GGTGA	2 cut(s)	338, 734
AsuII	TTCGAA	1 cut(s)	41
BalI	TGGCCA	1 cut(s)	785
BauI	CACGAG	3 cut(s)	674, 806, 942
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	6 cut(s)	200, 405, 414, 518, 775, 943
BceAI	ACGGC	2 cut(s)	375, 524
BciT130I	CCWGG	1 cut(s)	269
BcnI	CCSGG	1 cut(s)	1064
BcoDI	GTCTC	1 cut(s)	68
BfmI	CTRYAG	2 cut(s)	1018, 1157
BisI	GCNGC	3 cut(s)	18, 189, 447
BlpI	GCTNAGC	1 cut(s)	906
BlsI	GCNGC	3 cut(s)	19, 190, 448
Bme1390I	CCNGG	2 cut(s)	269, 1064
BmgT120I	GGNCC	2 cut(s)	389, 415
BmiI	GGNNCC	2 cut(s)	416, 529
BmrFI	CCNGG	2 cut(s)	269, 1064
BmrI	ACTGGG	1 cut(s)	785
BmsI	GCATC	3 cut(s)	301, 412, 660
BmuI	ACTGGG	1 cut(s)	785
Bpu10I	CCTNAGC	1 cut(s)	882
Bpu1102I	GCTNAGC	1 cut(s)	906
Bpu14I	TTCGAA	1 cut(s)	41
BpuEI	CTTGAG	2 cut(s)	836, 1068
BpuMI	CCSGG	1 cut(s)	1064
Bsa29I	ATCGAT	1 cut(s)	53
BsaAI	YACGTR	1 cut(s)	761
BsaBI	GATNNNNATC	1 cut(s)	86
BsaHI	GRCGYC	1 cut(s)	362
BsaI	GGTCTC	1 cut(s)	68
BsaWI	WCCGGW	2 cut(s)	371, 989
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 378, 456
Bse1I	ACTGG	2 cut(s)	780, 1057
Bse3DI	GCAATG	1 cut(s)	716
Bse8I	GATNNNNATC	1 cut(s)	86
BseBI	CCWGG	1 cut(s)	269
BseCI	ATCGAT	1 cut(s)	53
BseGI	GGATG	3 cut(s)	416, 675, 786
BseJI	GATNNNNATC	1 cut(s)	86
BseLI	CCNNNNNNNGG	3 cut(s)	73, 378, 456
BseMI	GCAATG	1 cut(s)	716
BseMII	CTCAG	2 cut(s)	422, 912
BseNI	ACTGG	2 cut(s)	780, 1057
BseXI	GCAGC	1 cut(s)	4
BshFI	GGCC	5 cut(s)	391, 417, 449, 785, 1081
BshVI	ATCGAT	1 cut(s)	53
BsiSI	CCGG	8 cut(s)	67, 151, 236, 257, 372, 392, 990, 1064
BslI	CCNNNNNNNGG	3 cut(s)	73, 378, 456
BsmAI	GTCTC	1 cut(s)	68
BsmI	GAATGC	1 cut(s)	883
BsnI	GGCC	5 cut(s)	391, 417, 449, 785, 1081
Bso31I	GGTCTC	1 cut(s)	68
Bsp119I	TTCGAA	1 cut(s)	41
Bsp143I	GATC	7 cut(s)	81, 98, 228, 264, 285, 310, 865
Bsp1720I	GCTNAGC	1 cut(s)	906
BspACI	CCGC	7 cut(s)	186, 189, 203, 260, 378, 446, 743
BspANI	GGCC	5 cut(s)	391, 417, 449, 785, 1081
BspCNI	CTCAG	2 cut(s)	423, 913
BspDI	ATCGAT	1 cut(s)	53
BspLI	GGNNCC	2 cut(s)	416, 529
BspPI	GGATC	2 cut(s)	106, 259
BspT104I	TTCGAA	1 cut(s)	41
BspTNI	GGTCTC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	716
BsrI	ACTGG	2 cut(s)	780, 1057
BssMI	GATC	7 cut(s)	81, 98, 228, 264, 285, 310, 865
BssNAI	GTATAC	1 cut(s)	426
BssNI	GRCGYC	1 cut(s)	362
BssSI	CACGAG	3 cut(s)	674, 806, 942
Bst1107I	GTATAC	1 cut(s)	426
Bst2BI	CACGAG	3 cut(s)	674, 806, 942
Bst2UI	CCWGG	1 cut(s)	269
Bst4CI	ACNGT	1 cut(s)	722
Bst6I	CTCTTC	2 cut(s)	462, 1001
BstACI	GRCGYC	1 cut(s)	362
BstBAI	YACGTR	1 cut(s)	761
BstBI	TTCGAA	1 cut(s)	41
BstC8I	GCNNGC	2 cut(s)	743, 985
BstDEI	CTNAG	4 cut(s)	431, 882, 906, 921
BstF5I	GGATG	3 cut(s)	416, 675, 786
BstHHI	GCGC	1 cut(s)	241
BstKTI	GATC	7 cut(s)	84, 101, 231, 267, 288, 313, 868
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	7 cut(s)	81, 98, 228, 264, 285, 310, 865
BstMWI	GCNNNNNNNGC	4 cut(s)	179, 188, 194, 738
BstNI	CCWGG	1 cut(s)	269
BstSCI	CCNGG	2 cut(s)	267, 1062
BstSFI	CTRYAG	2 cut(s)	1018, 1157
BstSNI	TACGTA	1 cut(s)	761
BstV1I	GCAGC	1 cut(s)	4
BstX2I	RGATCY	2 cut(s)	98, 264
BstXI	CCANNNNNNTGG	1 cut(s)	793
BstYI	RGATCY	2 cut(s)	98, 264
BstZ17I	GTATAC	1 cut(s)	426
Bsu15I	ATCGAT	1 cut(s)	53
BsuRI	GGCC	5 cut(s)	391, 417, 449, 785, 1081
BsuTUI	ATCGAT	1 cut(s)	53
BtgZI	GCGATG	3 cut(s)	97, 178, 747
BtsCI	GGATG	3 cut(s)	416, 675, 786
BtsIMutI	CAGTG	1 cut(s)	1050
Cac8I	GCNNGC	2 cut(s)	743, 985
CfoI	GCGC	1 cut(s)	241
Cfr13I	GGNCC	2 cut(s)	389, 415
ClaI	ATCGAT	1 cut(s)	53
CseI	GACGC	2 cut(s)	23, 351
Csp6I	GTAC	2 cut(s)	10, 614
CviAII	CATG	1 cut(s)	1039
CviQI	GTAC	2 cut(s)	10, 614
DdeI	CTNAG	4 cut(s)	431, 882, 906, 921
DpnI	GATC	7 cut(s)	83, 100, 230, 266, 287, 312, 867
DpnII	GATC	7 cut(s)	81, 98, 228, 264, 285, 310, 865
EaeI	YGGCCR	2 cut(s)	447, 783
Eam1104I	CTCTTC	2 cut(s)	462, 1001
EarI	CTCTTC	2 cut(s)	462, 1001
EciI	GGCGGA	2 cut(s)	175, 275
Eco105I	TACGTA	1 cut(s)	761
Eco31I	GGTCTC	1 cut(s)	68
Eco32I	GATATC	2 cut(s)	277, 1015
EcoRI	GAATTC	1 cut(s)	581
EcoRII	CCWGG	1 cut(s)	267
EcoRV	GATATC	2 cut(s)	277, 1015
FaeI	CATG	1 cut(s)	1042
FatI	CATG	1 cut(s)	1038
FauI	CCCGC	2 cut(s)	371, 750
FblI	GTMKAC	2 cut(s)	425, 690
Fnu4HI	GCNGC	3 cut(s)	18, 189, 447
FokI	GGATG	3 cut(s)	423, 682, 793
Fsp4HI	GCNGC	3 cut(s)	18, 189, 447
GlaI	GCGC	1 cut(s)	240
GluI	GCNGC	3 cut(s)	18, 189, 447
HaeIII	GGCC	5 cut(s)	391, 417, 449, 785, 1081
HapII	CCGG	8 cut(s)	67, 151, 236, 257, 372, 392, 990, 1064
HgaI	GACGC	2 cut(s)	23, 351
HhaI	GCGC	1 cut(s)	241
Hin1I	GRCGYC	1 cut(s)	362
Hin1II	CATG	1 cut(s)	1042
Hin6I	GCGC	1 cut(s)	239
HinP1I	GCGC	1 cut(s)	239
HincII	GTYRAC	1 cut(s)	691
HindII	GTYRAC	1 cut(s)	691
HinfI	GANTC	4 cut(s)	87, 244, 625, 715
HpaII	CCGG	8 cut(s)	67, 151, 236, 257, 372, 392, 990, 1064
HphI	GGTGA	2 cut(s)	338, 734
Hpy166II	GTNNAC	3 cut(s)	10, 426, 691
Hpy188I	TCNGA	7 cut(s)	86, 310, 432, 482, 892, 922, 1028
Hpy188III	TCNNGA	5 cut(s)	79, 280, 544, 815, 836
Hpy8I	GTNNAC	3 cut(s)	10, 426, 691
Hpy99I	CGWCG	2 cut(s)	17, 367
HpyAV	CCTTC	3 cut(s)	479, 571, 650
HpyCH4III	ACNGT	1 cut(s)	722
HpyCH4IV	ACGT	1 cut(s)	760
HpyCH4V	TGCA	3 cut(s)	350, 662, 987
HpyF10VI	GCNNNNNNNGC	4 cut(s)	179, 188, 194, 738
HpyF3I	CTNAG	4 cut(s)	431, 882, 906, 921
HpySE526I	ACGT	1 cut(s)	760
Hsp92I	GRCGYC	1 cut(s)	362
Hsp92II	CATG	1 cut(s)	1042
HspAI	GCGC	1 cut(s)	239
Kzo9I	GATC	7 cut(s)	81, 98, 228, 264, 285, 310, 865
LmnI	GCTCC	1 cut(s)	706
Lsp1109I	GCAGC	1 cut(s)	4
LweI	GCATC	3 cut(s)	301, 412, 660
MaeII	ACGT	1 cut(s)	760
MaeIII	GTNAC	2 cut(s)	491, 934
MalI	GATC	7 cut(s)	83, 100, 230, 266, 287, 312, 867
MboI	GATC	7 cut(s)	81, 98, 228, 264, 285, 310, 865
MboII	GAAGA	5 cut(s)	116, 295, 479, 1018, 1068
MflI	RGATCY	2 cut(s)	98, 264
MlsI	TGGCCA	1 cut(s)	785
MluCI	AATT	4 cut(s)	105, 382, 581, 700
MluNI	TGGCCA	1 cut(s)	785
MnlI	CCTC	8 cut(s)	143, 193, 329, 388, 802, 1084, 1092, 1126
Mox20I	TGGCCA	1 cut(s)	785
MroXI	GAANNNNTTC	1 cut(s)	581
MscI	TGGCCA	1 cut(s)	785
MseI	TTAA	7 cut(s)	27, 140, 222, 518, 555, 843, 998
MslI	CAYNNNNRTG	2 cut(s)	723, 992
Msp20I	TGGCCA	1 cut(s)	785
MspI	CCGG	8 cut(s)	67, 151, 236, 257, 372, 392, 990, 1064
MspR9I	CCNGG	2 cut(s)	269, 1064
Mva1269I	GAATGC	1 cut(s)	883
MvaI	CCWGG	1 cut(s)	269
MwoI	GCNNNNNNNGC	4 cut(s)	179, 188, 194, 738
NciI	CCSGG	1 cut(s)	1064
NdeII	GATC	7 cut(s)	81, 98, 228, 264, 285, 310, 865
NlaIII	CATG	1 cut(s)	1042
NlaIV	GGNNCC	2 cut(s)	416, 529
NmeAIII	GCCGAG	1 cut(s)	192
NmuCI	GTSAC	1 cut(s)	934
NspV	TTCGAA	1 cut(s)	41
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PctI	GAATGC	1 cut(s)	883
PdmI	GAANNNNTTC	1 cut(s)	581
PfeI	GAWTC	4 cut(s)	87, 244, 625, 715
PflFI	GACNNNGTC	1 cut(s)	686
PkrI	GCNGC	3 cut(s)	19, 190, 448
Ppu21I	YACGTR	1 cut(s)	761
Psp6I	CCWGG	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	2 cut(s)	416, 529
PspPI	GGNCC	2 cut(s)	389, 415
PsuI	RGATCY	2 cut(s)	98, 264
PsyI	GACNNNGTC	1 cut(s)	686
RsaI	GTAC	2 cut(s)	11, 615
RsaNI	GTAC	2 cut(s)	10, 614
RseI	CAYNNNNRTG	2 cut(s)	723, 992
SalI	GTCGAC	1 cut(s)	689
SaqAI	TTAA	7 cut(s)	27, 140, 222, 518, 555, 843, 998
SatI	GCNGC	3 cut(s)	18, 189, 447
Sau3AI	GATC	7 cut(s)	81, 98, 228, 264, 285, 310, 865
Sau96I	GGNCC	2 cut(s)	389, 415
ScrFI	CCNGG	2 cut(s)	269, 1064
SfaNI	GCATC	3 cut(s)	301, 412, 660
SfcI	CTRYAG	2 cut(s)	1018, 1157
SfuI	TTCGAA	1 cut(s)	41
SmiMI	CAYNNNNRTG	2 cut(s)	723, 992
SmlI	CTYRAG	2 cut(s)	815, 1083
SmoI	CTYRAG	2 cut(s)	815, 1083
SnaBI	TACGTA	1 cut(s)	761
Sse9I	AATT	4 cut(s)	105, 382, 581, 700
SsiI	CCGC	7 cut(s)	186, 189, 203, 260, 378, 446, 743
SspI	AATATT	1 cut(s)	769
StyD4I	CCNGG	2 cut(s)	267, 1062
TaaI	ACNGT	1 cut(s)	722
TaiI	ACGT	1 cut(s)	763
TaqI	TCGA	9 cut(s)	41, 53, 160, 273, 288, 295, 313, 320, 690
TasI	AATT	4 cut(s)	105, 382, 581, 700
TauI	GCSGC	2 cut(s)	191, 449
TfiI	GAWTC	4 cut(s)	87, 244, 625, 715
Tru1I	TTAA	7 cut(s)	27, 140, 222, 518, 555, 843, 998
Tru9I	TTAA	7 cut(s)	27, 140, 222, 518, 555, 843, 998
TscAI	CASTG	1 cut(s)	1057
TseFI	GTSAC	1 cut(s)	934
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	934
TspDTI	ATGAA	2 cut(s)	779, 821
TspRI	CASTG	1 cut(s)	1057
Tth111I	GACNNNGTC	1 cut(s)	686
XapI	RAATTY	1 cut(s)	581
XmiI	GTMKAC	2 cut(s)	425, 690
XmnI	GAANNNNTTC	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.