Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0015116

Physical Location & Seq

Genomic Coordinates Forward (+)

18029136 .. 18031819

Gene Structure 2684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028045

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGTCAGTGTACGACGCGGCGTTCGTGAACTCGGAGCTCTCGAAACCCACTTCAATCTTCGGCCTCCATCTCTGGGTCGTCATCGGAATCCTCGTCGGCTCTCTGATAGTCCTGACTCTGTGGTACACTTTGAGAGAGCTGGAGGCTGCGACTAATGGGTTGTGTGCAGAAAATGTGATTGGAGAAGGTGGGTATGGGATTGTGTACAGTGGGATTCTCAGTGATGGGACTAAAGTCGCTGTTAAGAACTTGTTGAATAACAGGGGTCAAGCTGAGAAGGAATTTAAAGTGGAGGTGGAAGTAATTGGGCGTGTGAGACATAAAAATCTTGTGAGGTTGCTCGGATACTGTGTTGAAGGTGCATACAGAATGCTTGTGTATGAGTACGTTGACAATGGCAATCTGGATCAATGGCTCCATGGGGATGTTGGTGAAGTCAGCCCTCTAACATGGGATATTCGAATGAATGTTATATTGGGAACTGCAAAAGGGTTGGCCTATCTTCATGAGGGTCTTGAACCAAAGGTTGTTCATCGTGATGTAAAATCTAGCAACATACTAGTTGATCGCCAATGGCATCCCAAGGTGTCTGATTTCGGGCTTGCCAAGCTCTTGTGCTCTGAGAATAGTTATGTGACGACTCGAGTGATGGGAACATTTGGTTATGTTGCACCAGAGTATGCTTGCACCGGAATGTTGAATGAGAAGAGTGATGTATATAGCTTTGGAATACTTCTAATGGAGATAATATCCGGGAGAAACCCTGTTGATTATGGTCGGCCAAAAGGAGAGGTGAATCTAGTTGAATGGTTAAAAAACATGGTTGGAGACCGAAAAGCTGAGGAAGTAGTTGATCCTAAGTTGCCTGAGATGCCTGCTTCAAAAGCACTTAAACGTGCTCTGCTGGTTGCTCTTCGATGTGTTGATCCTGATGCCACAAAAAGGCCAAAAATGGGACATGTGATCCACATGCTGGAGGCTGATGACTTGCTATTCCGTGATGAAAGGCGACCAGGGAGAGATGCATCCCGTTCAGATCCTGATTATCGACGGGAGAATCATGTTGGTATGAAGATGGGTGATAAAGATAAACACTTGAGTGAAGGGACTTCCGATACTAGTGAAGGTGATAGTGGTAGGAACCATAATCAACCTACAAGGTGGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

390

Amino Acids

43.52

Weight (kDa)

6.29

Isoelectric Point (pI)

28.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	57 - 324	3.3e-47	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	58 - 322	5.2e-45	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01540 AT1G01540 AT4G01330 AT4G01330 AT4G01330
fragaria_vesca	FvH4_7g15080
malus_domestica	MD00G1111700.v1.1 MD01G1069300.v1.1
prunus_persica	Prupe.2G175400_v2.0.a1
pyrus_communis	pycom01g09870
rosa_chinensis	RchiOBHm_Chr1g0357191
rosa_laevigata	RLG00000028045
rosa_multiflora	Rmu_sc0005967.1_g000006
rosa_rugosa	Rorug01G0254800
rosa_samantha	Rh1BG236900
rosa_wichuraiana	Rw1G023740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	973
AccII	CGCG	1 cut(s)	17
AciI	CCGC	1 cut(s)	17
AclWI	GGATC	5 cut(s)	414, 848, 920, 958, 1031
AcoI	YGGCCR	1 cut(s)	779
AcsI	RAATTY	1 cut(s)	281
AfaI	GTAC	4 cut(s)	11, 125, 206, 386
AfiI	CCNNNNNNNGG	4 cut(s)	73, 942, 953, 973
AflIII	ACRYGT	1 cut(s)	958
AgsI	TTSAA	7 cut(s)	54, 256, 356, 518, 700, 806, 882
AhlI	ACTAGT	2 cut(s)	559, 1118
AjnI	CCWGG	1 cut(s)	1012
AjuI	GAANNNNNNNTTGG	4 cut(s)	162, 194, 458, 490
AleI	CACNNNNGTG	1 cut(s)	1098
AluBI	AGCT	6 cut(s)	37, 139, 272, 610, 723, 839
AluI	AGCT	6 cut(s)	37, 139, 272, 610, 723, 839
Alw21I	GWGCWC	3 cut(s)	39, 620, 901
Alw26I	GTCTC	2 cut(s)	310, 822
AlwI	GGATC	5 cut(s)	414, 848, 920, 958, 1031
AlwNI	CAGNNNCTG	1 cut(s)	1040
Ama87I	CYCGRG	1 cut(s)	642
AoxI	GGCC	4 cut(s)	61, 495, 779, 944
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	281
ArsI	GACNNNNNNTTYG	1 cut(s)	37
AsuC2I	CCSGG	1 cut(s)	754
AsuHPI	GGTGA	4 cut(s)	443, 805, 1091, 1139
AsuII	TTCGAA	1 cut(s)	460
AvaI	CYCGRG	1 cut(s)	642
BanII	GRGCYC	1 cut(s)	39
Bbv12I	GWGCWC	3 cut(s)	39, 620, 901
BbvCI	CCTCAGC	1 cut(s)	840
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	4 cut(s)	75, 218, 643, 1069
BciT130I	CCWGG	1 cut(s)	1014
BciVI	GTATCC	1 cut(s)	338
BcnI	CCSGG	1 cut(s)	754
BcoDI	GTCTC	2 cut(s)	310, 822
BcuI	ACTAGT	2 cut(s)	559, 1118
BfaI	CTAG	4 cut(s)	549, 560, 800, 1119
BfuI	GTATCC	1 cut(s)	338
BisI	GCNGC	2 cut(s)	18, 147
BlsI	GCNGC	2 cut(s)	19, 148
Bme1390I	CCNGG	2 cut(s)	754, 1014
BmeT110I	CYCGRG	1 cut(s)	642
BmiI	GGNNCC	2 cut(s)	416, 1142
BmrFI	CCNGG	2 cut(s)	754, 1014
BmsI	GCATC	5 cut(s)	586, 861, 922, 1012, 1034
BoxI	GACNNNNGTC	1 cut(s)	233
BpmI	CTGGAG	2 cut(s)	161, 995
Bpu10I	CCTNAGC	1 cut(s)	840
Bpu14I	TTCGAA	1 cut(s)	460
BpuEI	CTTGAG	1 cut(s)	1117
BpuMI	CCSGG	1 cut(s)	754
BsaI	GGTCTC	1 cut(s)	822
BsaJI	CCNNGG	3 cut(s)	418, 582, 1013
BsaWI	WCCGGW	1 cut(s)	689
Bsc4I	CCNNNNNNNGG	4 cut(s)	73, 942, 953, 973
BseBI	CCWGG	1 cut(s)	1014
BseDI	CCNNGG	3 cut(s)	418, 582, 1013
BseGI	GGATG	3 cut(s)	430, 577, 1025
BseLI	CCNNNNNNNGG	4 cut(s)	73, 942, 953, 973
BseMII	CTCAG	5 cut(s)	232, 264, 612, 831, 858
BseXI	GCAGC	1 cut(s)	133
BsgI	GTGCAG	1 cut(s)	186
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	4 cut(s)	63, 497, 781, 946
BsiHKAI	GWGCWC	3 cut(s)	39, 620, 901
BsiHKCI	CYCGRG	1 cut(s)	642
BsiSI	CCGG	2 cut(s)	690, 753
BslFI	GGGAC	3 cut(s)	241, 969, 1120
BslI	CCNNNNNNNGG	4 cut(s)	73, 942, 953, 973
BsmAI	GTCTC	2 cut(s)	310, 822
BsmFI	GGGAC	3 cut(s)	241, 969, 1120
BsmI	GAATGC	1 cut(s)	375
BsnI	GGCC	4 cut(s)	63, 497, 781, 946
Bso31I	GGTCTC	1 cut(s)	822
BsoBI	CYCGRG	1 cut(s)	642
Bsp119I	TTCGAA	1 cut(s)	460
Bsp1286I	GDGCHC	3 cut(s)	39, 620, 901
Bsp1407I	TGTACA	1 cut(s)	204
Bsp143I	GATC	6 cut(s)	406, 565, 853, 925, 963, 1036
Bsp19I	CCATGG	1 cut(s)	418
BspACI	CCGC	1 cut(s)	17
BspANI	GGCC	4 cut(s)	63, 497, 781, 946
BspCNI	CTCAG	5 cut(s)	231, 265, 613, 832, 859
BspFNI	CGCG	1 cut(s)	17
BspHI	TCATGA	1 cut(s)	505
BspLI	GGNNCC	2 cut(s)	416, 1142
BspPI	GGATC	5 cut(s)	414, 848, 920, 958, 1031
BspQI	GCTCTTC	1 cut(s)	918
BspT104I	TTCGAA	1 cut(s)	460
BspTNI	GGTCTC	1 cut(s)	822
BsrGI	TGTACA	1 cut(s)	204
BssECI	CCNNGG	3 cut(s)	418, 582, 1013
BssMI	GATC	6 cut(s)	406, 565, 853, 925, 963, 1036
BssT1I	CCWWGG	2 cut(s)	418, 582
Bst2UI	CCWGG	1 cut(s)	1014
Bst4CI	ACNGT	2 cut(s)	209, 350
Bst6I	CTCTTC	2 cut(s)	701, 918
BstAUI	TGTACA	1 cut(s)	204
BstBI	TTCGAA	1 cut(s)	460
BstC8I	GCNNGC	3 cut(s)	603, 685, 876
BstDEI	CTNAG	6 cut(s)	218, 273, 621, 840, 858, 867
BstDSI	CCRYGG	1 cut(s)	418
BstF5I	GGATG	3 cut(s)	430, 577, 1025
BstFNI	CGCG	1 cut(s)	17
BstKTI	GATC	6 cut(s)	409, 568, 856, 928, 966, 1039
BstMAI	GTCTC	2 cut(s)	310, 822
BstMBI	GATC	6 cut(s)	406, 565, 853, 925, 963, 1036
BstMWI	GCNNNNNNNGC	3 cut(s)	607, 871, 884
BstNI	CCWGG	1 cut(s)	1014
BstNSI	RCATGY	2 cut(s)	962, 973
BstPAI	GACNNNNGTC	1 cut(s)	233
BstSCI	CCNGG	2 cut(s)	752, 1012
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	1 cut(s)	133
BstX2I	RGATCY	1 cut(s)	1036
BstYI	RGATCY	1 cut(s)	1036
BsuI	GTATCC	1 cut(s)	338
BsuRI	GGCC	4 cut(s)	63, 497, 781, 946
BtgI	CCRYGG	1 cut(s)	418
BtsCI	GGATG	3 cut(s)	430, 577, 1025
BtsIMutI	CAGTG	3 cut(s)	12, 214, 226
Cac8I	GCNNGC	3 cut(s)	603, 685, 876
CaiI	CAGNNNCTG	1 cut(s)	1040
CciI	TCATGA	1 cut(s)	505
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	4 cut(s)	10, 124, 205, 385
CviAII	CATG	7 cut(s)	419, 450, 506, 820, 959, 970, 1061
CviQI	GTAC	4 cut(s)	10, 124, 205, 385
DdeI	CTNAG	6 cut(s)	218, 273, 621, 840, 858, 867
DpnI	GATC	6 cut(s)	408, 567, 855, 927, 965, 1038
DpnII	GATC	6 cut(s)	406, 565, 853, 925, 963, 1036
DraI	TTTAAA	1 cut(s)	286
EaeI	YGGCCR	1 cut(s)	779
Eam1104I	CTCTTC	2 cut(s)	701, 918
EarI	CTCTTC	2 cut(s)	701, 918
Ecl136II	GAGCTC	1 cut(s)	37
Eco130I	CCWWGG	2 cut(s)	418, 582
Eco24I	GRGCYC	1 cut(s)	39
Eco31I	GGTCTC	1 cut(s)	822
Eco53kI	GAGCTC	1 cut(s)	37
Eco88I	CYCGRG	1 cut(s)	642
EcoICRI	GAGCTC	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	1012
EcoT14I	CCWWGG	2 cut(s)	418, 582
EcoT22I	ATGCAT	1 cut(s)	1027
EcoT38I	GRGCYC	1 cut(s)	39
ErhI	CCWWGG	2 cut(s)	418, 582
FaeI	CATG	7 cut(s)	422, 453, 509, 823, 962, 973, 1064
FaqI	GGGAC	3 cut(s)	241, 969, 1120
FatI	CATG	7 cut(s)	418, 449, 505, 819, 958, 969, 1060
Fnu4HI	GCNGC	2 cut(s)	18, 147
FokI	GGATG	3 cut(s)	437, 564, 1012
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	2 cut(s)	18, 147
FspBI	CTAG	4 cut(s)	549, 560, 800, 1119
GluI	GCNGC	2 cut(s)	18, 147
GsuI	CTGGAG	2 cut(s)	161, 995
HaeIII	GGCC	4 cut(s)	63, 497, 781, 946
HapII	CCGG	2 cut(s)	690, 753
HgaI	GACGC	1 cut(s)	23
Hin1II	CATG	7 cut(s)	422, 453, 509, 823, 962, 973, 1064
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HinfI	GANTC	6 cut(s)	87, 115, 214, 640, 796, 1057
HpaII	CCGG	2 cut(s)	690, 753
HphI	GGTGA	4 cut(s)	443, 805, 1091, 1139
Hpy166II	GTNNAC	5 cut(s)	10, 28, 126, 205, 391
Hpy188I	TCNGA	8 cut(s)	34, 86, 105, 344, 592, 622, 1036, 1114
Hpy188III	TCNNGA	9 cut(s)	25, 40, 112, 404, 506, 515, 536, 929, 1040
Hpy8I	GTNNAC	5 cut(s)	10, 28, 126, 205, 391
Hpy99I	CGWCG	3 cut(s)	17, 98, 1053
HpyAV	CCTTC	5 cut(s)	179, 271, 350, 1097, 1118
HpyCH4III	ACNGT	2 cut(s)	209, 350
HpyCH4IV	ACGT	2 cut(s)	387, 895
HpyCH4V	TGCA	6 cut(s)	167, 362, 485, 671, 687, 1025
HpyF10VI	GCNNNNNNNGC	3 cut(s)	607, 871, 884
HpyF3I	CTNAG	6 cut(s)	218, 273, 621, 840, 858, 867
HpySE526I	ACGT	2 cut(s)	387, 895
Hsp92II	CATG	7 cut(s)	422, 453, 509, 823, 962, 973, 1064
Kzo9I	GATC	6 cut(s)	406, 565, 853, 925, 963, 1036
LguI	GCTCTTC	1 cut(s)	918
LmnI	GCTCC	2 cut(s)	34, 420
Lsp1109I	GCAGC	1 cut(s)	133
LweI	GCATC	5 cut(s)	586, 861, 922, 1012, 1034
MaeI	CTAG	4 cut(s)	549, 560, 800, 1119
MaeII	ACGT	2 cut(s)	387, 895
MaeIII	GTNAC	1 cut(s)	634
MalI	GATC	6 cut(s)	408, 567, 855, 927, 965, 1038
MboI	GATC	6 cut(s)	406, 565, 853, 925, 963, 1036
MboII	GAAGA	5 cut(s)	49, 494, 718, 905, 1084
MflI	RGATCY	1 cut(s)	1036
MhlI	GDGCHC	3 cut(s)	39, 620, 901
MluCI	AATT	2 cut(s)	281, 303
MlyI	GAGTC	2 cut(s)	109, 634
MmeI	TCCRAC	1 cut(s)	805
Mph1103I	ATGCAT	1 cut(s)	1027
MseI	TTAA	4 cut(s)	243, 285, 812, 891
MslI	CAYNNNNRTG	4 cut(s)	423, 537, 692, 1098
MspI	CCGG	2 cut(s)	690, 753
MspR9I	CCNGG	2 cut(s)	754, 1014
Mva1269I	GAATGC	1 cut(s)	375
MvaI	CCWGG	1 cut(s)	1014
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	3 cut(s)	607, 871, 884
NciI	CCSGG	1 cut(s)	754
NcoI	CCATGG	1 cut(s)	418
NdeII	GATC	6 cut(s)	406, 565, 853, 925, 963, 1036
NlaIII	CATG	7 cut(s)	422, 453, 509, 823, 962, 973, 1064
NlaIV	GGNNCC	2 cut(s)	416, 1142
NmuCI	GTSAC	1 cut(s)	634
NsiI	ATGCAT	1 cut(s)	1027
NspI	RCATGY	2 cut(s)	962, 973
NspV	TTCGAA	1 cut(s)	460
OliI	CACNNNNGTG	1 cut(s)	1098
PaeR7I	CTCGAG	1 cut(s)	642
PagI	TCATGA	1 cut(s)	505
PciI	ACATGT	1 cut(s)	958
PciSI	GCTCTTC	1 cut(s)	918
PcsI	WCGNNNNNNNCGW	3 cut(s)	21, 38, 90
PctI	GAATGC	1 cut(s)	375
PfeI	GAWTC	4 cut(s)	87, 214, 796, 1057
PflMI	CCANNNNNTGG	1 cut(s)	973
PfoI	TCCNGGA	1 cut(s)	752
PkrI	GCNGC	2 cut(s)	19, 148
PleI	GAGTC	2 cut(s)	109, 634
PpsI	GAGTC	2 cut(s)	109, 634
PscI	ACATGT	1 cut(s)	958
PshAI	GACNNNNGTC	1 cut(s)	233
Psp124BI	GAGCTC	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	1012
PspGI	CCWGG	1 cut(s)	1012
PspN4I	GGNNCC	2 cut(s)	416, 1142
PspXI	VCTCGAGB	1 cut(s)	642
PstNI	CAGNNNCTG	1 cut(s)	1040
PsuI	RGATCY	1 cut(s)	1036
RsaI	GTAC	4 cut(s)	11, 125, 206, 386
RsaNI	GTAC	4 cut(s)	10, 124, 205, 385
RseI	CAYNNNNRTG	4 cut(s)	423, 537, 692, 1098
SacI	GAGCTC	1 cut(s)	39
SapI	GCTCTTC	1 cut(s)	918
SaqAI	TTAA	4 cut(s)	243, 285, 812, 891
SatI	GCNGC	2 cut(s)	18, 147
Sau3AI	GATC	6 cut(s)	406, 565, 853, 925, 963, 1036
SchI	GAGTC	2 cut(s)	109, 634
ScrFI	CCNGG	2 cut(s)	754, 1014
SduI	GDGCHC	3 cut(s)	39, 620, 901
SfaNI	GCATC	5 cut(s)	586, 861, 922, 1012, 1034
Sfr274I	CTCGAG	1 cut(s)	642
SfuI	TTCGAA	1 cut(s)	460
SlaI	CTCGAG	1 cut(s)	642
SmiMI	CAYNNNNRTG	4 cut(s)	423, 537, 692, 1098
SmlI	CTYRAG	2 cut(s)	642, 1096
SmoI	CTYRAG	2 cut(s)	642, 1096
SpeI	ACTAGT	2 cut(s)	559, 1118
Sse9I	AATT	2 cut(s)	281, 303
SsiI	CCGC	1 cut(s)	17
SspMI	CTAG	4 cut(s)	549, 560, 800, 1119
SstI	GAGCTC	1 cut(s)	39
StyD4I	CCNGG	2 cut(s)	752, 1012
StyI	CCWWGG	2 cut(s)	418, 582
TaaI	ACNGT	2 cut(s)	209, 350
TaiI	ACGT	2 cut(s)	390, 898
TaqI	TCGA	5 cut(s)	41, 460, 643, 916, 1048
TaqII	GACCGA	1 cut(s)	846
TasI	AATT	2 cut(s)	281, 303
TatI	WGTACW	1 cut(s)	204
TauI	GCSGC	1 cut(s)	20
TfiI	GAWTC	4 cut(s)	87, 214, 796, 1057
Tru1I	TTAA	4 cut(s)	243, 285, 812, 891
Tru9I	TTAA	4 cut(s)	243, 285, 812, 891
TscAI	CASTG	3 cut(s)	12, 214, 226
TseFI	GTSAC	1 cut(s)	634
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	634
TspDTI	ATGAA	5 cut(s)	479, 494, 521, 1017, 1085
TspGWI	ACGGA	1 cut(s)	986
TspRI	CASTG	3 cut(s)	12, 214, 226
Van91I	CCANNNNNTGG	1 cut(s)	973
XapI	RAATTY	1 cut(s)	281
XceI	RCATGY	2 cut(s)	962, 973
XcmI	CCANNNNNNNNNTGG	1 cut(s)	425
XhoI	CTCGAG	1 cut(s)	642
XspI	CTAG	4 cut(s)	549, 560, 800, 1119
Zsp2I	ATGCAT	1 cut(s)	1027

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.