Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0015116

Physical Location & Seq

Genomic Coordinates Forward (+)

36440004 .. 36465292

Gene Structure 25289 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0254800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGCAGATGGTAATCACAGTGAGCCCCCTACAGTTCTGGTACTTCGCCGATCCCCAACCATTGCTCTCTTGGAACCCATAGTCTCCCAAAAATTCAACTTACTGAAAGCCTGGGACTCTCCTCTCCCTCAAGACCAGTTCTTGACCACCCACGCCCGCTCCGTCCAGGCCCTCCTCTCCTCCGTCGGTGGGCTGCCCATCACCGCCCAAATCCTCCACTTGCTCCCTTCCCTCAAATTCATAGCCACCACCAGCGCCGGCATTGACCACGTTGACTCGGCCGAGTGTCGACGCCGCGGCGTTGCTGTCGCCAACGCCGCTAAAGCCTTTGCTGAGGACGCTGCTGACATGGCTGTGGGGCTGTTCATTGATGTCATGAGAAAGATGTCGGCTTCGGATCGGTATGTTGGGGACGGGCTCTGGGCTACCAGAGGAAACTATCCTCTTGGTTCTAAGATTGGAGGAAAGAAGGTCGGTATTGTTGGATTGGGCAACATTGGGTTCGAAGTTGCAAAAAGATTGGAGGCATTTGGCTGTAGTGTGTCGTACAATTCGAGGAGCGAAAGGCCGTATTTGTCATACCGATTCTATTCCAATGTGTGTGAGCTGGCAGCAGACAGTGATGCTCTCATCATCTGTTGTGCATTGACAGAGCAAACCCACCACATGATCAACAAGGAAGTTTTGTCTGCGTTGGGAAGAGAGGGGGTGGTTGTTAATGTAGGGCGCGGAGCCATTATCGATGAGAAAGAAATGGTGCAGTGTTTGGTGCGAGGAGAGATAAGGGGTGCTGGCCTGGATGTGTTTGAGAATGAGCCTGATGTTCCTAAAGAGCTCTTTGCATTGGATAATGTTGTACTGTCACCGCATCAAGCTGTTCTTACACATGAAGCTTTCGTGGGTTTGGGTGAATTAGTAACAGGGAATTTGGAAGCATTCTTCTCAAACAAACCGTTGCTTTCTCCGGCTGTGATTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

326

Amino Acids

35.05

Weight (kDa)

5.66

Isoelectric Point (pI)

40.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-Hacid_dh	PF00389	35 - 321	4.7e-19	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2-Hacid_dh_C	PF02826	120 - 292	3.6e-49	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01540 AT1G01540 AT4G01330 AT4G01330 AT4G01330
fragaria_vesca	FvH4_7g15080
malus_domestica	MD00G1111700.v1.1 MD01G1069300.v1.1
prunus_persica	Prupe.2G175400_v2.0.a1
pyrus_communis	pycom01g09870
rosa_chinensis	RchiOBHm_Chr1g0357191
rosa_laevigata	RLG00000028045
rosa_multiflora	Rmu_sc0005967.1_g000006
rosa_rugosa	Rorug01G0254800
rosa_samantha	Rh1BG236900
rosa_wichuraiana	Rw1G023740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	159
AccI	GTMKAC	1 cut(s)	289
AccII	CGCG	2 cut(s)	297, 729
AciI	CCGC	7 cut(s)	157, 204, 295, 297, 318, 729, 866
AclWI	GGATC	2 cut(s)	45, 405
AcoI	YGGCCR	1 cut(s)	279
AcsI	RAATTY	3 cut(s)	92, 236, 925
AcyI	GRCGYC	1 cut(s)	292
AfaI	GTAC	3 cut(s)	42, 548, 858
AfiI	CCNNNNNNNGG	1 cut(s)	189
AgsI	TTSAA	1 cut(s)	97
AjnI	CCWGG	3 cut(s)	110, 165, 795
AluBI	AGCT	4 cut(s)	607, 835, 875, 893
AluI	AGCT	4 cut(s)	607, 835, 875, 893
Alw21I	GWGCWC	1 cut(s)	837
Alw26I	GTCTC	1 cut(s)	88
AlwI	GGATC	2 cut(s)	45, 405
AoxI	GGCC	4 cut(s)	168, 279, 566, 793
ApeKI	GCWGC	3 cut(s)	193, 341, 611
ApoI	RAATTY	3 cut(s)	92, 236, 925
AspLEI	GCGC	2 cut(s)	257, 729
AspS9I	GGNCC	1 cut(s)	169
AsuHPI	GGTGA	3 cut(s)	193, 855, 920
AsuII	TTCGAA	1 cut(s)	504
BanII	GRGCYC	3 cut(s)	27, 420, 837
Bbv12I	GWGCWC	1 cut(s)	837
BbvCI	CCTCAGC	1 cut(s)	333
BbvI	GCAGC	3 cut(s)	180, 328, 623
BccI	CCATC	2 cut(s)	2, 206
BceAI	ACGGC	1 cut(s)	553
BciT130I	CCWGG	3 cut(s)	112, 167, 797
BclI	TGATCA	1 cut(s)	669
BcoDI	GTCTC	1 cut(s)	88
BfmI	CTRYAG	2 cut(s)	30, 535
BfoI	RGCGCY	1 cut(s)	258
BisI	GCNGC	6 cut(s)	194, 295, 298, 318, 342, 612
BlsI	GCNGC	6 cut(s)	195, 296, 299, 319, 343, 613
Bme1390I	CCNGG	3 cut(s)	112, 167, 797
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	2 cut(s)	75, 733
BmrFI	CCNGG	3 cut(s)	112, 167, 797
BmsI	GCATC	2 cut(s)	613, 877
Bpu10I	CCTNAGC	1 cut(s)	333
Bpu14I	TTCGAA	1 cut(s)	504
BpuEI	CTTGAG	1 cut(s)	114
Bsa29I	ATCGAT	1 cut(s)	741
BsaBI	GATNNNNATC	1 cut(s)	12
BsaHI	GRCGYC	1 cut(s)	292
BsaJI	CCNNGG	2 cut(s)	111, 295
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
Bse118I	RCCGGY	1 cut(s)	257
Bse1I	ACTGG	1 cut(s)	136
Bse3DI	GCAATG	1 cut(s)	60
Bse8I	GATNNNNATC	1 cut(s)	12
BseBI	CCWGG	3 cut(s)	112, 167, 797
BseCI	ATCGAT	1 cut(s)	741
BseDI	CCNNGG	2 cut(s)	111, 295
BseGI	GGATG	1 cut(s)	805
BseJI	GATNNNNATC	1 cut(s)	12
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	1 cut(s)	136
BseRI	GAGGAG	5 cut(s)	111, 164, 169, 571, 789
BseX3I	CGGCCG	1 cut(s)	279
BseXI	GCAGC	3 cut(s)	180, 328, 623
BsgI	GTGCAG	1 cut(s)	779
Bsh1236I	CGCG	2 cut(s)	297, 729
Bsh1285I	CGRYCG	1 cut(s)	282
BshFI	GGCC	4 cut(s)	170, 281, 568, 795
BshVI	ATCGAT	1 cut(s)	741
BsiEI	CGRYCG	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	837
BsiSI	CCGG	2 cut(s)	258, 965
BslFI	GGGAC	2 cut(s)	128, 425
BslI	CCNNNNNNNGG	1 cut(s)	189
BsmAI	GTCTC	1 cut(s)	88
BsmFI	GGGAC	2 cut(s)	128, 425
BsmI	GAATGC	1 cut(s)	935
BsnI	GGCC	4 cut(s)	170, 281, 568, 795
Bsp119I	TTCGAA	1 cut(s)	504
Bsp1286I	GDGCHC	3 cut(s)	27, 420, 837
Bsp143I	GATC	3 cut(s)	50, 397, 669
BspACI	CCGC	7 cut(s)	157, 204, 295, 297, 318, 729, 866
BspANI	GGCC	4 cut(s)	170, 281, 568, 795
BspCNI	CTCAG	1 cut(s)	325
BspDI	ATCGAT	1 cut(s)	741
BspFNI	CGCG	2 cut(s)	297, 729
BspHI	TCATGA	1 cut(s)	375
BspLI	GGNNCC	2 cut(s)	75, 733
BspPI	GGATC	2 cut(s)	45, 405
BspT104I	TTCGAA	1 cut(s)	504
BsrBI	CCGCTC	1 cut(s)	159
BsrDI	GCAATG	1 cut(s)	60
BsrFI	RCCGGY	1 cut(s)	257
BsrI	ACTGG	1 cut(s)	136
BssAI	RCCGGY	1 cut(s)	257
BssECI	CCNNGG	2 cut(s)	111, 295
BssMI	GATC	3 cut(s)	50, 397, 669
BssNI	GRCGYC	1 cut(s)	292
Bst2UI	CCWGG	3 cut(s)	112, 167, 797
Bst4CI	ACNGT	5 cut(s)	20, 34, 620, 861, 954
Bst6I	CTCTTC	1 cut(s)	694
BstACI	GRCGYC	1 cut(s)	292
BstBI	TTCGAA	1 cut(s)	504
BstC8I	GCNNGC	4 cut(s)	157, 259, 609, 793
BstDEI	CTNAG	2 cut(s)	333, 453
BstDSI	CCRYGG	1 cut(s)	295
BstF5I	GGATG	1 cut(s)	805
BstFNI	CGCG	2 cut(s)	297, 729
BstH2I	RGCGCY	1 cut(s)	258
BstHHI	GCGC	2 cut(s)	257, 729
BstKTI	GATC	3 cut(s)	53, 400, 672
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	3 cut(s)	50, 397, 669
BstMCI	CGRYCG	1 cut(s)	282
BstMWI	GCNNNNNNNGC	4 cut(s)	317, 323, 338, 350
BstNI	CCWGG	3 cut(s)	112, 167, 797
BstSCI	CCNGG	3 cut(s)	110, 165, 795
BstSFI	CTRYAG	2 cut(s)	30, 535
BstUI	CGCG	2 cut(s)	297, 729
BstV1I	GCAGC	3 cut(s)	180, 328, 623
BstZI	CGGCCG	1 cut(s)	279
Bsu15I	ATCGAT	1 cut(s)	741
BsuRI	GGCC	4 cut(s)	170, 281, 568, 795
BsuTUI	ATCGAT	1 cut(s)	741
BtgI	CCRYGG	1 cut(s)	295
BtsCI	GGATG	1 cut(s)	805
BtsI	GCAGTG	1 cut(s)	767
BtsIMutI	CAGTG	3 cut(s)	25, 625, 767
Cac8I	GCNNGC	4 cut(s)	157, 259, 609, 793
CciI	TCATGA	1 cut(s)	375
CfoI	GCGC	2 cut(s)	257, 729
Cfr10I	RCCGGY	1 cut(s)	257
Cfr13I	GGNCC	1 cut(s)	169
Cfr42I	CCGCGG	1 cut(s)	298
ClaI	ATCGAT	1 cut(s)	741
CseI	GACGC	2 cut(s)	300, 347
Csp6I	GTAC	3 cut(s)	41, 547, 857
CviAII	CATG	4 cut(s)	349, 376, 667, 887
CviQI	GTAC	3 cut(s)	41, 547, 857
DdeI	CTNAG	2 cut(s)	333, 453
DpnI	GATC	3 cut(s)	52, 399, 671
DpnII	GATC	3 cut(s)	50, 397, 669
EaeI	YGGCCR	1 cut(s)	279
EagI	CGGCCG	1 cut(s)	279
Eam1104I	CTCTTC	1 cut(s)	694
EarI	CTCTTC	1 cut(s)	694
Ecl136II	GAGCTC	1 cut(s)	835
EclXI	CGGCCG	1 cut(s)	279
Eco24I	GRGCYC	3 cut(s)	27, 420, 837
Eco52I	CGGCCG	1 cut(s)	279
Eco53kI	GAGCTC	1 cut(s)	835
EcoICRI	GAGCTC	1 cut(s)	835
EcoO109I	RGGNCCY	1 cut(s)	169
EcoRII	CCWGG	3 cut(s)	110, 165, 795
EcoT38I	GRGCYC	3 cut(s)	27, 420, 837
FaeI	CATG	4 cut(s)	352, 379, 670, 890
FaiI	YATR	8 cut(s)	80, 242, 350, 377, 405, 580, 668, 888
FalI	AAGNNNNNCTT	2 cut(s)	864, 896
FaqI	GGGAC	2 cut(s)	128, 425
FatI	CATG	4 cut(s)	348, 375, 666, 886
FauI	CCCGC	1 cut(s)	164
FbaI	TGATCA	1 cut(s)	669
FblI	GTMKAC	1 cut(s)	289
Fnu4HI	GCNGC	6 cut(s)	194, 295, 298, 318, 342, 612
FokI	GGATG	1 cut(s)	812
FriOI	GRGCYC	3 cut(s)	27, 420, 837
Fsp4HI	GCNGC	6 cut(s)	194, 295, 298, 318, 342, 612
GlaI	GCGC	2 cut(s)	256, 728
GluI	GCNGC	6 cut(s)	194, 295, 298, 318, 342, 612
HaeII	RGCGCY	1 cut(s)	258
HaeIII	GGCC	4 cut(s)	170, 281, 568, 795
HapII	CCGG	2 cut(s)	258, 965
HgaI	GACGC	2 cut(s)	300, 347
HhaI	GCGC	2 cut(s)	257, 729
Hin1I	GRCGYC	1 cut(s)	292
Hin1II	CATG	4 cut(s)	352, 379, 670, 890
Hin6I	GCGC	2 cut(s)	255, 727
HinP1I	GCGC	2 cut(s)	255, 727
HincII	GTYRAC	2 cut(s)	274, 290
HindII	GTYRAC	2 cut(s)	274, 290
HindIII	AAGCTT	1 cut(s)	891
HinfI	GANTC	3 cut(s)	116, 275, 585
HpaII	CCGG	2 cut(s)	258, 965
HphI	GGTGA	3 cut(s)	193, 855, 920
Hpy166II	GTNNAC	2 cut(s)	274, 290
Hpy188I	TCNGA	1 cut(s)	397
Hpy188III	TCNNGA	3 cut(s)	131, 142, 376
Hpy8I	GTNNAC	2 cut(s)	274, 290
Hpy99I	CGWCG	2 cut(s)	188, 294
HpyAV	CCTTC	2 cut(s)	237, 463
HpyCH4III	ACNGT	5 cut(s)	20, 34, 620, 861, 954
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	4 cut(s)	512, 644, 760, 842
HpyF10VI	GCNNNNNNNGC	4 cut(s)	317, 323, 338, 350
HpyF3I	CTNAG	2 cut(s)	333, 453
HpySE526I	ACGT	1 cut(s)	270
Hsp92I	GRCGYC	1 cut(s)	292
Hsp92II	CATG	4 cut(s)	352, 379, 670, 890
HspAI	GCGC	2 cut(s)	255, 727
KroI	GCCGGC	1 cut(s)	257
KroNI	GCCGGC	1 cut(s)	259
Ksp22I	TGATCA	1 cut(s)	669
KspI	CCGCGG	1 cut(s)	298
Kzo9I	GATC	3 cut(s)	50, 397, 669
LmnI	GCTCC	4 cut(s)	164, 228, 558, 731
Lsp1109I	GCAGC	3 cut(s)	180, 328, 623
LweI	GCATC	2 cut(s)	613, 877
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	2 cut(s)	861, 916
MalI	GATC	3 cut(s)	52, 399, 671
MbiI	CCGCTC	1 cut(s)	159
MboI	GATC	3 cut(s)	50, 397, 669
MboII	GAAGA	2 cut(s)	711, 931
MhlI	GDGCHC	3 cut(s)	27, 420, 837
MluCI	AATT	5 cut(s)	92, 236, 550, 911, 925
MlyI	GAGTC	2 cut(s)	110, 269
MmeI	TCCRAC	1 cut(s)	463
MroNI	GCCGGC	1 cut(s)	257
MseI	TTAA	1 cut(s)	717
MslI	CAYNNNNRTG	1 cut(s)	353
MspA1I	CMGCKG	1 cut(s)	297
MspI	CCGG	2 cut(s)	258, 965
MspR9I	CCNGG	3 cut(s)	112, 167, 797
Mva1269I	GAATGC	1 cut(s)	935
MvaI	CCWGG	3 cut(s)	112, 167, 797
MvnI	CGCG	2 cut(s)	297, 729
MwoI	GCNNNNNNNGC	4 cut(s)	317, 323, 338, 350
NaeI	GCCGGC	1 cut(s)	259
NdeII	GATC	3 cut(s)	50, 397, 669
NgoMIV	GCCGGC	1 cut(s)	257
NlaIII	CATG	4 cut(s)	352, 379, 670, 890
NlaIV	GGNNCC	2 cut(s)	75, 733
NmeAIII	GCCGAG	2 cut(s)	257, 307
NmuCI	GTSAC	1 cut(s)	861
NspV	TTCGAA	1 cut(s)	504
PagI	TCATGA	1 cut(s)	375
PcsI	WCGNNNNNNNCGW	2 cut(s)	159, 551
PctI	GAATGC	1 cut(s)	935
PdiI	GCCGGC	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	585
PkrI	GCNGC	6 cut(s)	195, 296, 299, 319, 343, 613
PleI	GAGTC	2 cut(s)	110, 269
PpsI	GAGTC	2 cut(s)	110, 269
Psp124BI	GAGCTC	1 cut(s)	837
Psp6I	CCWGG	3 cut(s)	110, 165, 795
PspGI	CCWGG	3 cut(s)	110, 165, 795
PspN4I	GGNNCC	2 cut(s)	75, 733
PspPI	GGNCC	1 cut(s)	169
RsaI	GTAC	3 cut(s)	42, 548, 858
RsaNI	GTAC	3 cut(s)	41, 547, 857
RseI	CAYNNNNRTG	1 cut(s)	353
SacI	GAGCTC	1 cut(s)	837
SacII	CCGCGG	1 cut(s)	298
SalI	GTCGAC	1 cut(s)	288
SaqAI	TTAA	1 cut(s)	717
SatI	GCNGC	6 cut(s)	194, 295, 298, 318, 342, 612
Sau3AI	GATC	3 cut(s)	50, 397, 669
Sau96I	GGNCC	1 cut(s)	169
SchI	GAGTC	2 cut(s)	110, 269
ScrFI	CCNGG	3 cut(s)	112, 167, 797
SduI	GDGCHC	3 cut(s)	27, 420, 837
SetI	ASST	6 cut(s)	273, 474, 609, 837, 877, 895
SfaNI	GCATC	2 cut(s)	613, 877
SfcI	CTRYAG	2 cut(s)	30, 535
Sfr303I	CCGCGG	1 cut(s)	298
SfuI	TTCGAA	1 cut(s)	504
SgrBI	CCGCGG	1 cut(s)	298
SmiMI	CAYNNNNRTG	1 cut(s)	353
SmlI	CTYRAG	1 cut(s)	129
SmoI	CTYRAG	1 cut(s)	129
Sse9I	AATT	5 cut(s)	92, 236, 550, 911, 925
SsiI	CCGC	7 cut(s)	157, 204, 295, 297, 318, 729, 866
SstI	GAGCTC	1 cut(s)	837
StyD4I	CCNGG	3 cut(s)	110, 165, 795
TaaI	ACNGT	5 cut(s)	20, 34, 620, 861, 954
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	4 cut(s)	289, 504, 554, 741
TasI	AATT	5 cut(s)	92, 236, 550, 911, 925
TatI	WGTACW	1 cut(s)	856
TauI	GCSGC	3 cut(s)	297, 300, 320
TfiI	GAWTC	1 cut(s)	585
Tru1I	TTAA	1 cut(s)	717
Tru9I	TTAA	1 cut(s)	717
TscAI	CASTG	3 cut(s)	25, 625, 767
TseFI	GTSAC	1 cut(s)	861
TseI	GCWGC	3 cut(s)	193, 341, 611
Tsp45I	GTSAC	1 cut(s)	861
TspDTI	ATGAA	3 cut(s)	229, 355, 903
TspGWI	ACGGA	2 cut(s)	151, 172
TspRI	CASTG	3 cut(s)	25, 625, 767
XapI	RAATTY	3 cut(s)	92, 236, 925
XcmI	CCANNNNNNNNNTGG	1 cut(s)	67
XmiI	GTMKAC	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.