AT1G01880

Xeroderma pigmentosum G I-region

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
306467 .. 309541
3075 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G01880.2

Sequence Viewer

Length: 1800 bp
ATGGGTGTGGGAGGCAATTTCTGGGATTTGCTGAGACCATATGCTCAGCAACAAGGCTTTGATTTTCTCAGAAACAAACGAGTCGCTGTTGATCTCTCCTTCTGGATCGTTCAGCATGAAACCGCTGTTAAGGGTTTCGTCCTTAAACCTCACCTCCGACTCACTTTCTTCCGTACTATCAACCTCTTCTCAAAGTTTGGAGCGTACCCGGTTTTTGTGGTTGATGGAACACCATCACCTTTGAAATCTCAGGCGAGAATCTCCAGGTTTTTCCGTTCTTCTGGAATTGATACTTGTAATCTACCTGTGATTAAAGATGGTGTCTCGGTTGAGAGAAACAAGCTGTTTTCTGAATGGGTTAGGGAATGTGTGGAGCTACTCGAATTGCTCGGTATTCCGGTGCTGAAAGCTAATGGTGAGGCTGAAGCTCTCTGTGCACAGTTAAACAGCCAAGGTTTTGTGGATGCTTGCATTACTCCTGATAGTGATGCTTTCCTTTTTGGTGCTATGTGCGTGATCAAAGACATCAAGCCTAATTCAAGAGAACCTTTTGAATGCTACCATATGTCACATATCGAGTCTGGCCTCGGTTTGAAGCGGAAACACTTGATTGCTATTTCTCTATTGGTGGGAAACGATTATGATTCAGGCGGTGTTCTTGGGATTGGTGTGGATAAAGCACTGCGCATTGTTCGTGAGTTTTCTGAAGACCAAGTACTTGAAAGACTACAGGACATTGGAAATGGGTTGCAACCTGCAGTTCCTGGTGGAATCAAATCCGGGGATGATGGTGAAGAATTCCGCTCAGAGATGAAAAAAAGATCTCCTCACTGTTCCCGTTGTGGACACCTGGGCAGCAAGAGAACTCATTTTAAGTCCTCTTGTGAGCACTGCGGTTGTGATAGTGGTTGCATTAAAAAACCATTAGGGTTTAGATGTGAATGCTCCTTTTGTTCCAAGGATCGAGATTTAAGGGAACAAAAGAAAACCAATGATTGGTGGATCAAAGTCTGCGATAAGATTGCTCTAGCGCCAGAGTTTCCCAACAGAAAGATTATTGAACTTTATCTATCCGATGGTTTGATGACAGGAGATGGATCGTCAATGTCTTGGGGAACTCCTGATACTGGAATGCTAGTGGATCTCATGGTTTTCAAACTGCACTGGGACCCATCTTATGTTAGAAAAATGTTGCTTCCGATGCTGTCGACCATTTATCTGAGAGAAAAGGCAAGAAACAACACAGGATACGCTTTGTTGTGTGATCAATACGAATTTCATTCAATCAAGTGCATAAAAACTAGATATGGGCATCAGTCCTTTGTAATAAGGTGGAGAAAACCCAAATCTACAAGTGGTTATAGTCATAGTCACAGCGAGCCAGAAGAATCAATTGTTGTATTGGAAGAAGAAGAAGAGTCTGTTGATCCGTTGGATGGTTTAAATGAACCTCAGGTGCAAAATGATAATGGTGACTGCTTCTTGCTAACTGATGAATGCATAGGACTTGTTCAGTCTGCTTTCCCTGATGAAACAGAGCATTTTCTACATGAGAAGAAACTGAGAGAGTCGAAAAAGAAGAATGTTTCTGAAGAAGAAACAGCAACACCAAGAGCAACAACAATGGGTGTACAAAGAAGCATTACCGATTTCTACCGTTCAGCGAAGAAAGCAGCAGCAGGTCAAAGTATAGAGACAGGCGGGAGTTCAAAAGCTTCTGCGGAAAAGAAGAGACAGGCAACTTCTACTAGTAGTAGTAACCTTACAAAGTCGGTCAGGCGTCGTCTCTTGTTTGGATAG

Protein Analysis

599

Amino Acids

67.19

Weight (kDa)

7.98

Isoelectric Point (pI)

47.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XPG_N PF00752 1 - 89 3.1e-09 XPG N-terminal domain
XPG_I PF00867 130 - 212 1.9e-21 XPG I-region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 686
Acc36I ACCTGC 2 cut(s) 763, 1670
AccB7I CCANNNNNTGG 1 cut(s) 996
AccBSI CCGCTC 1 cut(s) 804
AccI GTMKAC 1 cut(s) 1208
AciI CCGC 7 cut(s) 123, 598, 651, 802, 894, 1701, 1721
AclWI GGATC 6 cut(s) 113, 969, 1010, 1105, 1149, 1421
AcsI RAATTY 2 cut(s) 797, 1274
AcuI CTGAAG 3 cut(s) 444, 726, 1611
AcyI GRCGYC 1 cut(s) 1780
AfaI GTAC 4 cut(s) 175, 206, 717, 1632
AfiI CCNNNNNNNGG 3 cut(s) 996, 1127, 1436
AgsI TTSAA 9 cut(s) 244, 540, 554, 595, 722, 1061, 1156, 1284, 1710
AhlI ACTAGT 1 cut(s) 1748
AjnI CCWGG 3 cut(s) 263, 763, 849
AluBI AGCT 5 cut(s) 343, 376, 410, 428, 1715
AluI AGCT 5 cut(s) 343, 376, 410, 428, 1715
Alw21I GWGCWC 2 cut(s) 439, 891
Alw26I GTCTC 5 cut(s) 28, 328, 1688, 1726, 1790
Alw44I GTGCAC 1 cut(s) 435
AlwI GGATC 6 cut(s) 113, 969, 1010, 1105, 1149, 1421
AlwNI CAGNNNCTG 1 cut(s) 764
AoxI GGCC 1 cut(s) 583
ApaLI GTGCAC 1 cut(s) 435
ApeKI GCWGC 3 cut(s) 855, 1673, 1676
ApoI RAATTY 2 cut(s) 797, 1274
AspLEI GCGC 2 cut(s) 687, 1033
AspS9I GGNCC 1 cut(s) 1168
AsuC2I CCSGG 2 cut(s) 209, 781
AsuHPI GGTGA 5 cut(s) 143, 228, 428, 803, 1484
AvaII GGWCC 1 cut(s) 1168
AxyI CCTNAGG 1 cut(s) 1452
BaeGI GKGCMC 1 cut(s) 439
BarI GAAGNNNNNNTAC 2 cut(s) 699, 731
BbsI GAAGAC 1 cut(s) 714
Bbv12I GWGCWC 2 cut(s) 439, 891
BbvI GCAGC 3 cut(s) 867, 1685, 1688
BccI CCATC 8 cut(s) 218, 241, 311, 782, 1070, 1088, 1180, 1430
BcgI CGANNNNNNTGC 2 cut(s) 1004, 1038
BciT130I CCWGG 3 cut(s) 265, 765, 851
BciVI GTATCC 1 cut(s) 1241
BclI TGATCA 2 cut(s) 516, 1264
BcnI CCSGG 2 cut(s) 209, 781
BcoDI GTCTC 5 cut(s) 28, 328, 1688, 1726, 1790
BcuI ACTAGT 1 cut(s) 1748
BfaI CTAG 4 cut(s) 1028, 1136, 1302, 1749
BfmI CTRYAG 2 cut(s) 728, 756
BfoI RGCGCY 1 cut(s) 1034
BfuAI ACCTGC 2 cut(s) 763, 1670
BfuI GTATCC 1 cut(s) 1241
BglII AGATCT 1 cut(s) 821
BisI GCNGC 3 cut(s) 856, 1674, 1677
BlpI GCTNAGC 1 cut(s) 45
BlsI GCNGC 3 cut(s) 857, 1675, 1678
BmcAI AGTACT 1 cut(s) 717
Bme1390I CCNGG 5 cut(s) 209, 265, 765, 781, 851
Bme18I GGWCC 1 cut(s) 1168
BmgT120I GGNCC 1 cut(s) 1168
BmiI GGNNCC 2 cut(s) 1169, 1170
BmrFI CCNGG 5 cut(s) 209, 265, 765, 781, 851
BmrI ACTGGG 1 cut(s) 1174
BmsI GCATC 4 cut(s) 454, 478, 1191, 1321
BmuI ACTGGG 1 cut(s) 1174
BpiI GAAGAC 1 cut(s) 714
BpmI CTGGAG 1 cut(s) 247
Bpu1102I GCTNAGC 1 cut(s) 45
BpuMI CCSGG 2 cut(s) 209, 781
BsaHI GRCGYC 1 cut(s) 1780
BsaI GGTCTC 1 cut(s) 28
BsaJI CCNNGG 5 cut(s) 451, 586, 780, 850, 957
BsaWI WCCGGW 1 cut(s) 397
BsaXI ACNNNNNCTCC 2 cut(s) 138, 168
Bsc4I CCNNNNNNNGG 3 cut(s) 996, 1127, 1436
Bse1I ACTGG 2 cut(s) 1132, 1169
Bse21I CCTNAGG 1 cut(s) 1452
BseBI CCWGG 3 cut(s) 265, 765, 851
BseDI CCNNGG 5 cut(s) 451, 586, 780, 850, 957
BseGI GGATG 3 cut(s) 469, 790, 1441
BseLI CCNNNNNNNGG 3 cut(s) 996, 1127, 1436
BseMII CTCAG 8 cut(s) 23, 59, 82, 263, 819, 1211, 1466, 1553
BseNI ACTGG 2 cut(s) 1132, 1169
BseRI GAGGAG 1 cut(s) 816
BseSI GKGCMC 1 cut(s) 439
BseXI GCAGC 3 cut(s) 867, 1685, 1688
BsgI GTGCAG 1 cut(s) 1145
BshFI GGCC 1 cut(s) 585
BsiHKAI GWGCWC 2 cut(s) 439, 891
BsiSI CCGG 3 cut(s) 209, 398, 780
BslFI GGGAC 1 cut(s) 1181
BslI CCNNNNNNNGG 3 cut(s) 996, 1127, 1436
BsmAI GTCTC 5 cut(s) 28, 328, 1688, 1726, 1790
BsmBI CGTCTC 1 cut(s) 1790
BsmFI GGGAC 1 cut(s) 1181
BsmI GAATGC 4 cut(s) 560, 947, 1137, 1502
BsnI GGCC 1 cut(s) 585
Bso31I GGTCTC 1 cut(s) 28
Bsp1286I GDGCHC 2 cut(s) 439, 891
Bsp1407I TGTACA 1 cut(s) 1630
Bsp1720I GCTNAGC 1 cut(s) 45
BspACI CCGC 7 cut(s) 123, 598, 651, 802, 894, 1701, 1721
BspANI GGCC 1 cut(s) 585
BspCNI CTCAG 8 cut(s) 24, 58, 81, 262, 818, 1212, 1465, 1554
BspLI GGNNCC 2 cut(s) 1169, 1170
BspMAI CTGCAG 1 cut(s) 760
BspMI ACCTGC 2 cut(s) 763, 1670
BspPI GGATC 6 cut(s) 113, 969, 1010, 1105, 1149, 1421
BspTNI GGTCTC 1 cut(s) 28
BsrBI CCGCTC 1 cut(s) 804
BsrGI TGTACA 1 cut(s) 1630
BsrI ACTGG 2 cut(s) 1132, 1169
BssECI CCNNGG 5 cut(s) 451, 586, 780, 850, 957
BssNI GRCGYC 1 cut(s) 1780
BssT1I CCWWGG 2 cut(s) 451, 957
Bst2UI CCWGG 3 cut(s) 265, 765, 851
Bst4CI ACNGT 3 cut(s) 441, 833, 1658
Bst6I CTCTTC 3 cut(s) 191, 1410, 1724
BstACI GRCGYC 1 cut(s) 1780
BstAUI TGTACA 1 cut(s) 1630
BstC8I GCNNGC 2 cut(s) 469, 1379
BstDEI CTNAG 8 cut(s) 32, 45, 68, 249, 805, 1220, 1452, 1562
BstF5I GGATG 3 cut(s) 469, 790, 1441
BstH2I RGCGCY 1 cut(s) 1034
BstHHI GCGC 2 cut(s) 687, 1033
BstMAI GTCTC 5 cut(s) 28, 328, 1688, 1726, 1790
BstMWI GCNNNNNNNGC 3 cut(s) 434, 1201, 1670
BstNI CCWGG 3 cut(s) 265, 765, 851
BstSCI CCNGG 5 cut(s) 207, 263, 763, 779, 849
BstSFI CTRYAG 2 cut(s) 728, 756
BstSLI GKGCMC 1 cut(s) 439
BstV1I GCAGC 3 cut(s) 867, 1685, 1688
BstV2I GAAGAC 1 cut(s) 714
BstX2I RGATCY 2 cut(s) 821, 1141
BstYI RGATCY 2 cut(s) 821, 1141
Bsu36I CCTNAGG 1 cut(s) 1452
BsuI GTATCC 1 cut(s) 1241
BsuRI GGCC 1 cut(s) 585
BtsCI GGATG 3 cut(s) 469, 790, 1441
BtsI GCAGTG 2 cut(s) 680, 889
BtsIMutI CAGTG 4 cut(s) 680, 829, 889, 1162
BveI ACCTGC 2 cut(s) 763, 1670
Cac8I GCNNGC 2 cut(s) 469, 1379
CaiI CAGNNNCTG 1 cut(s) 764
CfoI GCGC 2 cut(s) 687, 1033
Cfr13I GGNCC 1 cut(s) 1168
CseI GACGC 1 cut(s) 1769
Csp6I GTAC 4 cut(s) 174, 205, 716, 1631
CviAII CATG 3 cut(s) 116, 1147, 1550
CviQI GTAC 4 cut(s) 174, 205, 716, 1631
DdeI CTNAG 8 cut(s) 32, 45, 68, 249, 805, 1220, 1452, 1562
DraI TTTAAA 1 cut(s) 1443
Eam1104I CTCTTC 3 cut(s) 191, 1410, 1724
EarI CTCTTC 3 cut(s) 191, 1410, 1724
Eco130I CCWWGG 2 cut(s) 451, 957
Eco31I GGTCTC 1 cut(s) 28
Eco47I GGWCC 1 cut(s) 1168
Eco57I CTGAAG 3 cut(s) 444, 726, 1611
Eco81I CCTNAGG 1 cut(s) 1452
EcoO109I RGGNCCY 1 cut(s) 1168
EcoRI GAATTC 1 cut(s) 797
EcoRII CCWGG 3 cut(s) 263, 763, 849
EcoT14I CCWWGG 2 cut(s) 451, 957
EcoT22I ATGCAT 1 cut(s) 1502
ErhI CCWWGG 2 cut(s) 451, 957
Esp3I CGTCTC 1 cut(s) 1790
FaeI CATG 3 cut(s) 119, 1150, 1553
FalI AAGNNNNNCTT 2 cut(s) 532, 564
FaqI GGGAC 1 cut(s) 1181
FatI CATG 3 cut(s) 115, 1146, 1549
FauI CCCGC 1 cut(s) 1694
FauNDI CATATG 2 cut(s) 40, 564
FbaI TGATCA 2 cut(s) 516, 1264
FblI GTMKAC 1 cut(s) 1208
Fnu4HI GCNGC 3 cut(s) 856, 1674, 1677
FokI GGATG 3 cut(s) 476, 797, 1448
Fsp4HI GCNGC 3 cut(s) 856, 1674, 1677
FspBI CTAG 4 cut(s) 1028, 1136, 1302, 1749
FspI TGCGCA 1 cut(s) 686
GlaI GCGC 2 cut(s) 686, 1032
GluI GCNGC 3 cut(s) 856, 1674, 1677
GsuI CTGGAG 1 cut(s) 247
HaeII RGCGCY 1 cut(s) 1034
HaeIII GGCC 1 cut(s) 585
HapII CCGG 3 cut(s) 209, 398, 780
HgaI GACGC 1 cut(s) 1769
HhaI GCGC 2 cut(s) 687, 1033
Hin1I GRCGYC 1 cut(s) 1780
Hin1II CATG 3 cut(s) 119, 1150, 1553
Hin6I GCGC 2 cut(s) 685, 1031
HinP1I GCGC 2 cut(s) 685, 1031
HincII GTYRAC 1 cut(s) 1209
HindII GTYRAC 1 cut(s) 1209
HindIII AAGCTT 1 cut(s) 1713
HinfI GANTC 9 cut(s) 81, 159, 258, 578, 644, 771, 1388, 1418, 1568
HpaII CCGG 3 cut(s) 209, 398, 780
HphI GGTGA 5 cut(s) 143, 228, 428, 803, 1484
Hpy166II GTNNAC 4 cut(s) 437, 845, 1209, 1631
Hpy188I TCNGA 9 cut(s) 71, 158, 352, 706, 808, 1075, 1200, 1221, 1591
Hpy188III TCNNGA 7 cut(s) 103, 282, 479, 540, 695, 965, 1121
Hpy8I GTNNAC 4 cut(s) 437, 845, 1209, 1631
Hpy99I CGWCG 1 cut(s) 1785
HpyAV CCTTC 1 cut(s) 109
HpyCH4III ACNGT 3 cut(s) 441, 833, 1658
HpyCH4V TGCA 9 cut(s) 437, 471, 751, 758, 912, 1162, 1293, 1459, 1500
HpyF10VI GCNNNNNNNGC 3 cut(s) 434, 1201, 1670
HpyF3I CTNAG 8 cut(s) 32, 45, 68, 249, 805, 1220, 1452, 1562
Hsp92I GRCGYC 1 cut(s) 1780
Hsp92II CATG 3 cut(s) 119, 1150, 1553
HspAI GCGC 2 cut(s) 685, 1031
KflI GGGWCCC 1 cut(s) 1168
Ksp22I TGATCA 2 cut(s) 516, 1264
LmnI GCTCC 3 cut(s) 200, 373, 950
Lsp1109I GCAGC 3 cut(s) 867, 1685, 1688
LweI GCATC 4 cut(s) 454, 478, 1191, 1321
MaeI CTAG 4 cut(s) 1028, 1136, 1302, 1749
MaeIII GTNAC 4 cut(s) 567, 1370, 1472, 1757
MbiI CCGCTC 1 cut(s) 804
MfeI CAATTG 1 cut(s) 1392
MflI RGATCY 2 cut(s) 821, 1141
MhlI GDGCHC 2 cut(s) 439, 891
MluCI AATT 7 cut(s) 16, 285, 383, 535, 797, 1274, 1392
MlyI GAGTC 5 cut(s) 90, 153, 587, 1427, 1577
MmeI TCCRAC 2 cut(s) 181, 1413
MnlI CCTC 9 cut(s) 5, 159, 164, 194, 412, 596, 837, 889, 1461
Mph1103I ATGCAT 1 cut(s) 1502
MseI TTAA 8 cut(s) 129, 144, 312, 443, 873, 915, 971, 1442
MspA1I CMGCKG 1 cut(s) 125
MspI CCGG 3 cut(s) 209, 398, 780
MspR9I CCNGG 5 cut(s) 209, 265, 765, 781, 851
MunI CAATTG 1 cut(s) 1392
Mva1269I GAATGC 4 cut(s) 560, 947, 1137, 1502
MvaI CCWGG 3 cut(s) 265, 765, 851
MwoI GCNNNNNNNGC 3 cut(s) 434, 1201, 1670
NciI CCSGG 2 cut(s) 209, 781
NdeI CATATG 2 cut(s) 40, 564
NlaIII CATG 3 cut(s) 119, 1150, 1553
NlaIV GGNNCC 2 cut(s) 1169, 1170
NmuCI GTSAC 3 cut(s) 567, 1370, 1472
NsbI TGCGCA 1 cut(s) 686
NsiI ATGCAT 1 cut(s) 1502
PctI GAATGC 4 cut(s) 560, 947, 1137, 1502
PfeI GAWTC 4 cut(s) 258, 644, 771, 1388
PflMI CCANNNNNTGG 1 cut(s) 996
PkrI GCNGC 3 cut(s) 857, 1675, 1678
PleI GAGTC 5 cut(s) 89, 153, 586, 1426, 1576
PpsI GAGTC 5 cut(s) 89, 153, 586, 1426, 1576
PpuMI RGGWCCY 1 cut(s) 1168
Psp5II RGGWCCY 1 cut(s) 1168
Psp6I CCWGG 3 cut(s) 263, 763, 849
PspGI CCWGG 3 cut(s) 263, 763, 849
PspN4I GGNNCC 2 cut(s) 1169, 1170
PspPI GGNCC 1 cut(s) 1168
PspPPI RGGWCCY 1 cut(s) 1168
PsrI GAACNNNNNNTAC 2 cut(s) 1108, 1140
PstI CTGCAG 1 cut(s) 760
PstNI CAGNNNCTG 1 cut(s) 764
PsuI RGATCY 2 cut(s) 821, 1141
RsaI GTAC 4 cut(s) 175, 206, 717, 1632
RsaNI GTAC 4 cut(s) 174, 205, 716, 1631
SalI GTCGAC 1 cut(s) 1207
SaqAI TTAA 8 cut(s) 129, 144, 312, 443, 873, 915, 971, 1442
SatI GCNGC 3 cut(s) 856, 1674, 1677
Sau96I GGNCC 1 cut(s) 1168
ScaI AGTACT 1 cut(s) 717
SchI GAGTC 5 cut(s) 90, 153, 587, 1427, 1577
ScrFI CCNGG 5 cut(s) 209, 265, 765, 781, 851
SduI GDGCHC 2 cut(s) 439, 891
SfaNI GCATC 4 cut(s) 454, 478, 1191, 1321
SfcI CTRYAG 2 cut(s) 728, 756
SinI GGWCC 1 cut(s) 1168
SpeI ACTAGT 1 cut(s) 1748
Sse9I AATT 7 cut(s) 16, 285, 383, 535, 797, 1274, 1392
SsiI CCGC 7 cut(s) 123, 598, 651, 802, 894, 1701, 1721
SspMI CTAG 4 cut(s) 1028, 1136, 1302, 1749
StyD4I CCNGG 5 cut(s) 207, 263, 763, 779, 849
StyI CCWWGG 2 cut(s) 451, 957
TaaI ACNGT 3 cut(s) 441, 833, 1658
TaqI TCGA 5 cut(s) 381, 576, 964, 1208, 1571
TaqII GACCGA 1 cut(s) 1762
TasI AATT 7 cut(s) 16, 285, 383, 535, 797, 1274, 1392
TatI WGTACW 2 cut(s) 715, 1630
TfiI GAWTC 4 cut(s) 258, 644, 771, 1388
Tru1I TTAA 8 cut(s) 129, 144, 312, 443, 873, 915, 971, 1442
Tru9I TTAA 8 cut(s) 129, 144, 312, 443, 873, 915, 971, 1442
TscAI CASTG 4 cut(s) 687, 836, 896, 1169
TseFI GTSAC 3 cut(s) 567, 1370, 1472
TseI GCWGC 3 cut(s) 855, 1673, 1676
Tsp45I GTSAC 3 cut(s) 567, 1370, 1472
TspDTI ATGAA 6 cut(s) 132, 827, 1268, 1461, 1509, 1545
TspGWI ACGGA 3 cut(s) 161, 263, 1419
TspRI CASTG 4 cut(s) 687, 836, 896, 1169
Van91I CCANNNNNTGG 1 cut(s) 996
VneI GTGCAC 1 cut(s) 435
VpaK11BI GGWCC 1 cut(s) 1168
XapI RAATTY 2 cut(s) 797, 1274
XmiI GTMKAC 1 cut(s) 1208
XspI CTAG 4 cut(s) 1028, 1136, 1302, 1749
ZrmI AGTACT 1 cut(s) 717
Zsp2I ATGCAT 1 cut(s) 1502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.