Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009368

Physical Location & Seq

Genomic Coordinates Forward (+)

32348277 .. 32349048

Gene Structure 772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0224900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTACGGACAGACAACCCTAGAGTCAGTAGATTCCGACTTGGCTCTTCTTGAATCCATTCGACAACACCTTCTAGGCGATCATATGGAGCCTCCGGCAACCATCTTCGGCGGCGACTTAGACGACATCATCCCCTTGTTTTTCCCCAGTTCTACTGCTGCTTCAACCTGCTTGAGTGGGCTTTTTACCACGGAGAACTGGTGGGAATCGGCGCTAAAACCCGAGGACTCTGAATCCGAAGCTGTAAGTACACCGGAGGAGGAGGTTAAGTTGAGGAAGCAAGCTCAGAATGCGTCGGTTAAGCGTGATGTGCACGCACCCAGGGTGGAGAGGCATTTCAGGGGCGTGAGGAGGAGGCCTTGGGGGAAGTACGCGGCGGAGATTAGAGATCCGGCGAAGAATGGCGCGAGAGTGTGGCTCGGGACTTACGAGACTCCCGAGGACGCTGGTCTGGCTTACGACCGAGCTGCTTTCAAACTGCGCGGCTGTAAAGCCAAACTCAACTTTCCTCACTTGATTGGCTCGAACAGCGTTGAGCCGGTTAGGGTTACCCCGAAGCGGCGGCGCTTGCCGGAACAGTCCTCTACGTCGACCTCGTCGGCTTCGGAGGACAACGAGTCTCCCAAGGCAAAGAGAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008821 GO:0009555 GO:0009987 GO:0016787 GO:0016788 GO:0016889 GO:0016894 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048229 GO:0048256 GO:0048856 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XPG_I XPG_N

Protein Analysis

213

Amino Acids

23.78

Weight (kDa)

6.98

Isoelectric Point (pI)

65.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	112 - 162	4.3e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01880 AT1G01880 AT1G01880 AT1G01880
fragaria_vesca	FvH4_7g12990 FvH4_7g12990 FvH4_7g12990
malus_domestica	MD07G1125800.v1.1 MD08G1041100.v1.1
prunus_persica	Prupe.2G154000_v2.0.a1 Prupe.2G154000_v2.0.a1
pyrus_communis	pycom07g11950
rosa_chinensis	RchiOBHm_Chr1g0352131
rosa_laevigata	RLG00000028358
rosa_multiflora	Rmu_sc0001599.1_g000011
rosa_roxburghii	Rroxscaffold_4G00303180
rosa_rugosa	Rorug01G0224900
rosa_samantha	Rh1AG239000 Rh1BG210000 Rh1CG223500 Rh1DG236700
rosa_wichuraiana	Rw1G020760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	176
AccI	GTMKAC	1 cut(s)	590
AccII	CGCG	3 cut(s)	374, 407, 483
AciI	CCGC	6 cut(s)	111, 374, 377, 483, 559, 562
AclWI	GGATC	1 cut(s)	383
AfaI	GTAC	3 cut(s)	5, 250, 371
AfiI	CCNNNNNNNGG	1 cut(s)	558
AgsI	TTSAA	3 cut(s)	53, 165, 475
AhdI	GACNNNNNGTC	1 cut(s)	616
AjnI	CCWGG	1 cut(s)	320
AluBI	AGCT	3 cut(s)	242, 284, 467
AluI	AGCT	3 cut(s)	242, 284, 467
Alw21I	GWGCWC	1 cut(s)	315
Alw26I	GTCTC	2 cut(s)	425, 624
Alw44I	GTGCAC	1 cut(s)	311
AlwI	GGATC	1 cut(s)	383
Ama87I	CYCGRG	3 cut(s)	221, 419, 437
AoxI	GGCC	1 cut(s)	356
ApaLI	GTGCAC	1 cut(s)	311
ApeKI	GCWGC	2 cut(s)	158, 467
Asp700I	GAANNNNTTC	1 cut(s)	57
AspLEI	GCGC	4 cut(s)	214, 407, 483, 567
AvaI	CYCGRG	3 cut(s)	221, 419, 437
BaeGI	GKGCMC	1 cut(s)	315
Bbv12I	GWGCWC	1 cut(s)	315
BbvI	GCAGC	2 cut(s)	145, 454
BccI	CCATC	1 cut(s)	110
BcgI	CGANNNNNNTGC	2 cut(s)	449, 483
BciT130I	CCWGG	1 cut(s)	322
BcoDI	GTCTC	2 cut(s)	425, 624
BfaI	CTAG	2 cut(s)	20, 74
BfoI	RGCGCY	2 cut(s)	215, 568
BfuAI	ACCTGC	1 cut(s)	176
BisI	GCNGC	7 cut(s)	112, 159, 375, 468, 484, 560, 563
BlsI	GCNGC	7 cut(s)	113, 160, 376, 469, 485, 561, 564
Bme1390I	CCNGG	1 cut(s)	322
BmeRI	GACNNNNNGTC	1 cut(s)	616
BmeT110I	CYCGRG	3 cut(s)	221, 419, 437
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	1 cut(s)	322
BmrI	ACTGGG	1 cut(s)	141
BmuI	ACTGGG	1 cut(s)	141
BoxI	GACNNNNGTC	1 cut(s)	447
BplI	GAGNNNNNCTC	2 cut(s)	402, 434
BpuEI	CTTGAG	1 cut(s)	193
BsaJI	CCNNGG	7 cut(s)	189, 222, 320, 321, 359, 438, 624
BsaWI	WCCGGW	1 cut(s)	253
BsaXI	ACNNNNNCTCC	4 cut(s)	185, 215, 254, 284
Bsc4I	CCNNNNNNNGG	1 cut(s)	558
Bse118I	RCCGGY	1 cut(s)	538
Bse1I	ACTGG	2 cut(s)	147, 203
BseBI	CCWGG	1 cut(s)	322
BseDI	CCNNGG	7 cut(s)	189, 222, 320, 321, 359, 438, 624
BseGI	GGATG	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	558
BseMII	CTCAG	1 cut(s)	299
BseNI	ACTGG	2 cut(s)	147, 203
BseRI	GAGGAG	4 cut(s)	272, 275, 364, 367
BseSI	GKGCMC	1 cut(s)	315
BseXI	GCAGC	2 cut(s)	145, 454
Bsh1236I	CGCG	3 cut(s)	374, 407, 483
Bsh1285I	CGRYCG	1 cut(s)	463
BshFI	GGCC	1 cut(s)	358
BsiEI	CGRYCG	1 cut(s)	463
BsiHKAI	GWGCWC	1 cut(s)	315
BsiHKCI	CYCGRG	3 cut(s)	221, 419, 437
BsiSI	CCGG	5 cut(s)	95, 254, 392, 539, 572
BslFI	GGGAC	1 cut(s)	436
BslI	CCNNNNNNNGG	1 cut(s)	558
BsmAI	GTCTC	2 cut(s)	425, 624
BsmFI	GGGAC	1 cut(s)	436
BsmI	GAATGC	1 cut(s)	295
BsnI	GGCC	1 cut(s)	358
BsoBI	CYCGRG	3 cut(s)	221, 419, 437
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp143I	GATC	2 cut(s)	79, 388
BspACI	CCGC	6 cut(s)	111, 374, 377, 483, 559, 562
BspANI	GGCC	1 cut(s)	358
BspCNI	CTCAG	1 cut(s)	298
BspFNI	CGCG	3 cut(s)	374, 407, 483
BspLI	GGNNCC	1 cut(s)	90
BspMI	ACCTGC	1 cut(s)	176
BspPI	GGATC	1 cut(s)	383
BspQI	GCTCTTC	1 cut(s)	51
BsrFI	RCCGGY	1 cut(s)	538
BsrI	ACTGG	2 cut(s)	147, 203
BssAI	RCCGGY	1 cut(s)	538
BssECI	CCNNGG	7 cut(s)	189, 222, 320, 321, 359, 438, 624
BssMI	GATC	2 cut(s)	79, 388
BssT1I	CCWWGG	2 cut(s)	359, 624
Bst2UI	CCWGG	1 cut(s)	322
Bst4CI	ACNGT	1 cut(s)	579
Bst6I	CTCTTC	1 cut(s)	51
BstC8I	GCNNGC	3 cut(s)	282, 315, 569
BstDEI	CTNAG	2 cut(s)	118, 285
BstDSI	CCRYGG	1 cut(s)	189
BstEII	GGTNACC	1 cut(s)	547
BstF5I	GGATG	1 cut(s)	129
BstFNI	CGCG	3 cut(s)	374, 407, 483
BstH2I	RGCGCY	2 cut(s)	215, 568
BstHHI	GCGC	4 cut(s)	214, 407, 483, 567
BstKTI	GATC	2 cut(s)	82, 391
BstMAI	GTCTC	2 cut(s)	425, 624
BstMBI	GATC	2 cut(s)	79, 388
BstMCI	CGRYCG	1 cut(s)	463
BstMWI	GCNNNNNNNGC	5 cut(s)	290, 310, 452, 528, 568
BstNI	CCWGG	1 cut(s)	322
BstPAI	GACNNNNGTC	1 cut(s)	447
BstPI	GGTNACC	1 cut(s)	547
BstSCI	CCNGG	1 cut(s)	320
BstSLI	GKGCMC	1 cut(s)	315
BstUI	CGCG	3 cut(s)	374, 407, 483
BstV1I	GCAGC	2 cut(s)	145, 454
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BsuRI	GGCC	1 cut(s)	358
BtgI	CCRYGG	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	129
BveI	ACCTGC	1 cut(s)	176
Cac8I	GCNNGC	3 cut(s)	282, 315, 569
CfoI	GCGC	4 cut(s)	214, 407, 483, 567
Cfr10I	RCCGGY	1 cut(s)	538
CseI	GACGC	2 cut(s)	282, 452
Csp6I	GTAC	3 cut(s)	4, 249, 370
CviQI	GTAC	3 cut(s)	4, 249, 370
DdeI	CTNAG	2 cut(s)	118, 285
DpnI	GATC	2 cut(s)	81, 390
DpnII	GATC	2 cut(s)	79, 388
DriI	GACNNNNNGTC	1 cut(s)	616
Eam1104I	CTCTTC	1 cut(s)	51
Eam1105I	GACNNNNNGTC	1 cut(s)	616
EarI	CTCTTC	1 cut(s)	51
EciI	GGCGGA	1 cut(s)	392
Eco130I	CCWWGG	2 cut(s)	359, 624
Eco147I	AGGCCT	1 cut(s)	358
Eco88I	CYCGRG	3 cut(s)	221, 419, 437
Eco91I	GGTNACC	1 cut(s)	547
EcoO65I	GGTNACC	1 cut(s)	547
EcoRII	CCWGG	1 cut(s)	320
EcoT14I	CCWWGG	2 cut(s)	359, 624
ErhI	CCWWGG	2 cut(s)	359, 624
FaiI	YATR	2 cut(s)	84, 86
FaqI	GGGAC	1 cut(s)	436
FauNDI	CATATG	1 cut(s)	84
FblI	GTMKAC	1 cut(s)	590
Fnu4HI	GCNGC	7 cut(s)	112, 159, 375, 468, 484, 560, 563
FokI	GGATG	1 cut(s)	116
Fsp4HI	GCNGC	7 cut(s)	112, 159, 375, 468, 484, 560, 563
FspBI	CTAG	2 cut(s)	20, 74
GlaI	GCGC	4 cut(s)	213, 406, 482, 566
GluI	GCNGC	7 cut(s)	112, 159, 375, 468, 484, 560, 563
HaeII	RGCGCY	2 cut(s)	215, 568
HaeIII	GGCC	1 cut(s)	358
HapII	CCGG	5 cut(s)	95, 254, 392, 539, 572
HgaI	GACGC	2 cut(s)	282, 452
HhaI	GCGC	4 cut(s)	214, 407, 483, 567
Hin6I	GCGC	4 cut(s)	212, 405, 481, 565
HinP1I	GCGC	4 cut(s)	212, 405, 481, 565
HincII	GTYRAC	1 cut(s)	591
HindII	GTYRAC	1 cut(s)	591
HinfI	GANTC	8 cut(s)	23, 32, 53, 206, 227, 233, 433, 617
HpaII	CCGG	5 cut(s)	95, 254, 392, 539, 572
Hpy166II	GTNNAC	3 cut(s)	251, 313, 591
Hpy188I	TCNGA	5 cut(s)	37, 232, 238, 288, 607
Hpy188III	TCNNGA	3 cut(s)	50, 421, 437
Hpy8I	GTNNAC	3 cut(s)	251, 313, 591
Hpy99I	CGWCG	3 cut(s)	298, 592, 601
HpyAV	CCTTC	1 cut(s)	80
HpyCH4III	ACNGT	1 cut(s)	579
HpyCH4IV	ACGT	1 cut(s)	587
HpyCH4V	TGCA	1 cut(s)	313
HpyF10VI	GCNNNNNNNGC	5 cut(s)	290, 310, 452, 528, 568
HpyF3I	CTNAG	2 cut(s)	118, 285
HpySE526I	ACGT	1 cut(s)	587
HspAI	GCGC	4 cut(s)	212, 405, 481, 565
Kzo9I	GATC	2 cut(s)	79, 388
LguI	GCTCTTC	1 cut(s)	51
LmnI	GCTCC	1 cut(s)	88
Lsp1109I	GCAGC	2 cut(s)	145, 454
MaeI	CTAG	2 cut(s)	20, 74
MaeII	ACGT	1 cut(s)	587
MaeIII	GTNAC	1 cut(s)	547
MalI	GATC	2 cut(s)	81, 390
MboI	GATC	2 cut(s)	79, 388
MboII	GAAGA	3 cut(s)	38, 97, 409
MflI	RGATCY	1 cut(s)	388
MhlI	GDGCHC	1 cut(s)	315
MlyI	GAGTC	4 cut(s)	32, 221, 427, 626
MmeI	TCCRAC	1 cut(s)	60
MroXI	GAANNNNTTC	1 cut(s)	57
MseI	TTAA	2 cut(s)	267, 300
MspI	CCGG	5 cut(s)	95, 254, 392, 539, 572
MspR9I	CCNGG	1 cut(s)	322
Mva1269I	GAATGC	1 cut(s)	295
MvaI	CCWGG	1 cut(s)	322
MvnI	CGCG	3 cut(s)	374, 407, 483
MwoI	GCNNNNNNNGC	5 cut(s)	290, 310, 452, 528, 568
NdeI	CATATG	1 cut(s)	84
NdeII	GATC	2 cut(s)	79, 388
NlaIV	GGNNCC	1 cut(s)	90
PasI	CCCWGGG	1 cut(s)	321
PceI	AGGCCT	1 cut(s)	358
PciSI	GCTCTTC	1 cut(s)	51
PcsI	WCGNNNNNNNCGW	3 cut(s)	426, 435, 593
PctI	GAATGC	1 cut(s)	295
PdmI	GAANNNNTTC	1 cut(s)	57
PfeI	GAWTC	4 cut(s)	32, 53, 206, 233
PflFI	GACNNNGTC	1 cut(s)	595
PkrI	GCNGC	7 cut(s)	113, 160, 376, 469, 485, 561, 564
PleI	GAGTC	4 cut(s)	31, 221, 427, 625
PpsI	GAGTC	4 cut(s)	31, 221, 427, 625
PshAI	GACNNNNGTC	1 cut(s)	447
Psp6I	CCWGG	1 cut(s)	320
PspEI	GGTNACC	1 cut(s)	547
PspGI	CCWGG	1 cut(s)	320
PspN4I	GGNNCC	1 cut(s)	90
PsuI	RGATCY	1 cut(s)	388
PsyI	GACNNNGTC	1 cut(s)	595
RsaI	GTAC	3 cut(s)	5, 250, 371
RsaNI	GTAC	3 cut(s)	4, 249, 370
SalI	GTCGAC	1 cut(s)	589
SapI	GCTCTTC	1 cut(s)	51
SaqAI	TTAA	2 cut(s)	267, 300
SatI	GCNGC	7 cut(s)	112, 159, 375, 468, 484, 560, 563
Sau3AI	GATC	2 cut(s)	79, 388
SchI	GAGTC	4 cut(s)	32, 221, 427, 626
ScrFI	CCNGG	1 cut(s)	322
SduI	GDGCHC	1 cut(s)	315
SetI	ASST	8 cut(s)	72, 170, 244, 267, 286, 469, 590, 596
SmlI	CTYRAG	1 cut(s)	172
SmoI	CTYRAG	1 cut(s)	172
SseBI	AGGCCT	1 cut(s)	358
SsiI	CCGC	6 cut(s)	111, 374, 377, 483, 559, 562
SspMI	CTAG	2 cut(s)	20, 74
StuI	AGGCCT	1 cut(s)	358
StyD4I	CCNGG	1 cut(s)	320
StyI	CCWWGG	2 cut(s)	359, 624
TaaI	ACNGT	1 cut(s)	579
TaiI	ACGT	1 cut(s)	590
TaqI	TCGA	3 cut(s)	61, 524, 590
TaqII	GACCGA	1 cut(s)	477
TatI	WGTACW	1 cut(s)	248
TauI	GCSGC	5 cut(s)	114, 377, 486, 562, 565
TfiI	GAWTC	4 cut(s)	32, 53, 206, 233
Tru1I	TTAA	2 cut(s)	267, 300
Tru9I	TTAA	2 cut(s)	267, 300
TseI	GCWGC	2 cut(s)	158, 467
TspGWI	ACGGA	2 cut(s)	21, 206
Tth111I	GACNNNGTC	1 cut(s)	595
VneI	GTGCAC	1 cut(s)	311
XmiI	GTMKAC	1 cut(s)	590
XmnI	GAANNNNTTC	1 cut(s)	57
XspI	CTAG	2 cut(s)	20, 74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.