Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0009368

Physical Location & Seq

Genomic Coordinates Reverse (-)

3032000 .. 3033045

Gene Structure 1046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1041100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGCGAAGTGATCTTCGGTTTTTGTTTTCCGTTTTGCTCTCCTTTTTAATCGTACAACACGAAACAGCCAAGGATGGTGCACGAAGCTCCCACCTCAGGTTATCCGTCTTCTGTACCATCAATCTCTTCCCCAAGGTTCCCTTAATTATTGTTGTGTTTATTCTGTTTGGTGCATTTATGGTCTTTGTGGGTAACGGAACTCCATCGCCTCTGAATTTGCAGGTGAGGATTGCAAGGTTTTTTCGTTTCTCTGGTATTGATTCATCGAGTTTGCATATGGCTGAAAATGGTGAACTTCTTGGGATGCCTGTCTTAAAAGCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008821 GO:0009555 GO:0009987 GO:0016787 GO:0016788 GO:0016889 GO:0016894 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048229 GO:0048256 GO:0048856 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XPG_I XPG_N

Protein Analysis

109

Amino Acids

12.03

Weight (kDa)

10.26

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01880 AT1G01880 AT1G01880 AT1G01880
fragaria_vesca	FvH4_7g12990 FvH4_7g12990 FvH4_7g12990
malus_domestica	MD07G1125800.v1.1 MD08G1041100.v1.1
prunus_persica	Prupe.2G154000_v2.0.a1 Prupe.2G154000_v2.0.a1
pyrus_communis	pycom07g11950
rosa_chinensis	RchiOBHm_Chr1g0352131
rosa_laevigata	RLG00000028358
rosa_multiflora	Rmu_sc0001599.1_g000011
rosa_roxburghii	Rroxscaffold_4G00303180
rosa_rugosa	Rorug01G0224900
rosa_samantha	Rh1AG239000 Rh1BG210000 Rh1CG223500 Rh1DG236700
rosa_wichuraiana	Rw1G020760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	211
Acc36I	ACCTGC	1 cut(s)	211
AcsI	RAATTY	1 cut(s)	214
AfaI	GTAC	2 cut(s)	54, 115
AfiI	CCNNNNNNNGG	1 cut(s)	96
AluBI	AGCT	1 cut(s)	87
AluI	AGCT	1 cut(s)	87
Alw21I	GWGCWC	1 cut(s)	82
Alw44I	GTGCAC	1 cut(s)	78
ApaLI	GTGCAC	1 cut(s)	78
ApoI	RAATTY	1 cut(s)	214
AsuHPI	GGTGA	2 cut(s)	235, 302
AxyI	CCTNAGG	1 cut(s)	95
BaeGI	GKGCMC	1 cut(s)	82
BbsI	GAAGAC	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	82
BccI	CCATC	3 cut(s)	68, 125, 211
BfuAI	ACCTGC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	138
BmsI	GCATC	1 cut(s)	294
BpiI	GAAGAC	1 cut(s)	100
BsaJI	CCNNGG	2 cut(s)	69, 132
Bsc4I	CCNNNNNNNGG	1 cut(s)	96
Bse21I	CCTNAGG	1 cut(s)	95
BseDI	CCNNGG	2 cut(s)	69, 132
BseGI	GGATG	2 cut(s)	79, 309
BseLI	CCNNNNNNNGG	1 cut(s)	96
BseMII	CTCAG	1 cut(s)	109
BseSI	GKGCMC	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	82
BslI	CCNNNNNNNGG	1 cut(s)	96
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp143I	GATC	1 cut(s)	10
BspCNI	CTCAG	1 cut(s)	108
BspLI	GGNNCC	1 cut(s)	138
BspMI	ACCTGC	1 cut(s)	211
BssECI	CCNNGG	2 cut(s)	69, 132
BssMI	GATC	1 cut(s)	10
BssT1I	CCWWGG	2 cut(s)	69, 132
Bst6I	CTCTTC	1 cut(s)	131
BstDEI	CTNAG	1 cut(s)	95
BstF5I	GGATG	2 cut(s)	79, 309
BstKTI	GATC	1 cut(s)	13
BstMBI	GATC	1 cut(s)	10
BstSLI	GKGCMC	1 cut(s)	82
BstV2I	GAAGAC	1 cut(s)	100
Bsu36I	CCTNAGG	1 cut(s)	95
BtgZI	GCGATG	1 cut(s)	189
BtsCI	GGATG	2 cut(s)	79, 309
BveI	ACCTGC	1 cut(s)	211
Csp6I	GTAC	2 cut(s)	53, 114
CviJI	RGCY	3 cut(s)	68, 87, 281
CviKI_1	RGCY	3 cut(s)	68, 87, 281
CviQI	GTAC	2 cut(s)	53, 114
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
Eco130I	CCWWGG	2 cut(s)	69, 132
Eco81I	CCTNAGG	1 cut(s)	95
EcoT14I	CCWWGG	2 cut(s)	69, 132
ErhI	CCWWGG	2 cut(s)	69, 132
FaiI	YATR	3 cut(s)	179, 276, 278
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FauNDI	CATATG	1 cut(s)	276
FokI	GGATG	2 cut(s)	86, 316
HinfI	GANTC	1 cut(s)	260
HphI	GGTGA	2 cut(s)	235, 302
Hpy166II	GTNNAC	2 cut(s)	80, 293
Hpy188I	TCNGA	1 cut(s)	213
Hpy8I	GTNNAC	2 cut(s)	80, 293
HpyCH4V	TGCA	5 cut(s)	80, 173, 220, 233, 274
HpyF3I	CTNAG	1 cut(s)	95
Kzo9I	GATC	1 cut(s)	10
LmnI	GCTCC	1 cut(s)	92
LpnPI	CCDG	4 cut(s)	82, 206, 237, 321
LweI	GCATC	1 cut(s)	294
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	1 cut(s)	12
MboI	GATC	1 cut(s)	10
MboII	GAAGA	3 cut(s)	5, 100, 118
MhlI	GDGCHC	1 cut(s)	82
MluCI	AATT	3 cut(s)	144, 214, 322
MnlI	CCTC	3 cut(s)	104, 219, 219
MseI	TTAA	3 cut(s)	47, 143, 314
NdeI	CATATG	1 cut(s)	276
NdeII	GATC	1 cut(s)	10
NlaIV	GGNNCC	1 cut(s)	138
PaqCI	CACCTGC	1 cut(s)	211
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	260
PspN4I	GGNNCC	1 cut(s)	138
RsaI	GTAC	2 cut(s)	54, 115
RsaNI	GTAC	2 cut(s)	53, 114
SaqAI	TTAA	3 cut(s)	47, 143, 314
Sau3AI	GATC	1 cut(s)	10
SduI	GDGCHC	1 cut(s)	82
SetI	ASST	6 cut(s)	89, 96, 101, 138, 225, 239
SfaNI	GCATC	1 cut(s)	294
Sse9I	AATT	3 cut(s)	144, 214, 322
StyI	CCWWGG	2 cut(s)	69, 132
TaqI	TCGA	1 cut(s)	266
TasI	AATT	3 cut(s)	144, 214, 322
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	3 cut(s)	47, 143, 314
Tru9I	TTAA	3 cut(s)	47, 143, 314
TspDTI	ATGAA	1 cut(s)	252
TspGWI	ACGGA	3 cut(s)	19, 94, 210
VneI	GTGCAC	1 cut(s)	78
XapI	RAATTY	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.