Rh1AG239000

Flap endonuclease GEN-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
44919610 .. 44926716
7107 bp
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UTR
Exon/CDS
Intron
Rh1AG239000.1

Sequence Viewer

Length: 1602 bp
ATGGGAGTGGGTGGTAAATTCTGGGACTTGCTTAAACCCTATGCTCGGCACGAGGGTTTTGATTTCTTGAGGAACAAGCGCGTGGCTGTCGACCTCTCCCTTTGGATTGTGCAGCATGAAACCGCTATCAAGGCGCGTGCACGAAGCCCCCACCTGAGGCTCACATTCTTCCGCACCATCAATCTCTTCGCCAAGTTTGGAGCATTTCCAGTCTTTGTGGTTGATGGAAGCCCATCACATCTAAAGTCACAGGCGAGGACTGCAAGATTCTTTCGGTCTTCTGGTATTGATTCATCTAGTTTGCCTGTGGCTGAAGATGGCATTTCAGCTGAGAGGAACAGCAGATTTTCCAAGTATGTTCAAGAATGTGTGGAACTACTTGAACTACTTGGGATACCTGTTTTAAAGGCAAAAGGAGAGGCTGAAGCACTGTGCGGTCAGTTAAATCTCGAAGGTGATGTAGATGCTTGCATCACATCTGATAGTGATGCCTTACTCTTTGGGGCTAAATGTGTGATAAAAAGCTTCCAATCCAATTCAAAGGAACCATTTGAATGTTACTACATGTCAGATATTGAAGCTGGTCTAGGTTTGAAAAGGAAACATATGATTGCCATCTCTCTTTTGGTTGGAAATGACCATGATTTGAATGGAGTGCCAGGTATTGGACTAGATACAGCTCTTCGCTTTGTCCAGACATTTAGTGAAGATGAGATACTGAATAGATTACGTGATATAGGCAATGGCGATGCTTCACTGTTTCAAGGTGGTATCCAATATGTGGATGATATCGTACCGAGTTCAGCTGAGAGCTCGTTAAAGGCAAAACTTTCTCATTGTTCGTTCTGTGGGCATCCTGGCAGCAAAAAAGCTCATTCCAAGTCTTCCTGTGAATATTGTATTACCAACATGGATGAGGGTTGCTTGAAAAAGCCAGAGGGGTTCAGATGCAGTTGCTCTTCTTGTGATATGGATCGTAAAGAAAAGGAACAGAAGAAGCAAGAGAATTGGCGACTGAAAGTTCTCAACAAAATTGCACTGGAGAAGAATTTTCCCAATGAAGAGATAATTGAAATGTATTTGTGCAACAACCATGGTTACTTCAGTGCAAACGAGGGCCCTTGCATATCCTGGGAAAGTCCAAAAACTGAATTGCTGGTTGATTTCTTAGCTTTTCATCGGCTATGGGAACCATCTTATATTCGCCAGAGGATGCTTCCTATGCTGTCTACCATTTATTTGAGGGAAATGGCAGAAACTCCTGTAAACAATTTGTTGTATGGGCAATATGAGTTTGATTCCATTGACCGTTTGAAAATAAGAAATGGTCATCAATTTTATGTGGTCAAGTGGAAAAAGGCTGCACCTACAATGAATTCTGTCACTTTCACAAATCCTGAAGAGGAGTCAGATATCCTACAAGACGATGTTATTGAAGTTGATGAATCCATTAGTGTATGGGATGAGTCTGATGTCCCTGAGATTCGTAACAGTGATGGGTGCTACTTTTTGCTAACAGATGAAAATATGGACCTTGTCCAGGCTGCGTTTCCAGAGGAAGTTGACAGATTTTTGCAAGAGAAGGAAGAAGATGAAGGCTAA

Protein Analysis

533

Amino Acids

60.28

Weight (kDa)

5.11

Isoelectric Point (pI)

46.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XPG_N PF00752 1 - 93 1.1e-09 XPG N-terminal domain
XPG_I PF00867 131 - 213 8.5e-22 XPG I-region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 665, 781
AccI GTMKAC 2 cut(s) 90, 1229
AccII CGCG 2 cut(s) 81, 136
AciI CCGC 3 cut(s) 123, 172, 435
AclWI GGATC 1 cut(s) 981
AcsI RAATTY 3 cut(s) 17, 1048, 1375
AcuI CTGAAG 4 cut(s) 333, 444, 1087, 1419
AfaI GTAC 1 cut(s) 795
AfiI CCNNNNNNNGG 5 cut(s) 45, 156, 665, 781, 1540
AflIII ACRYGT 1 cut(s) 564
AjnI CCWGG 4 cut(s) 658, 856, 1130, 1539
AluBI AGCT 8 cut(s) 329, 525, 581, 680, 806, 813, 872, 1172
AluI AGCT 8 cut(s) 329, 525, 581, 680, 806, 813, 872, 1172
Alw21I GWGCWC 2 cut(s) 142, 815
Alw44I GTGCAC 1 cut(s) 138
AlwI GGATC 1 cut(s) 981
AoxI GGCC 1 cut(s) 1117
ApaI GGGCCC 1 cut(s) 1121
ApaLI GTGCAC 1 cut(s) 138
ApeKI GCWGC 4 cut(s) 112, 861, 1361, 1544
ApoI RAATTY 3 cut(s) 17, 1048, 1375
AspLEI GCGC 2 cut(s) 81, 136
AspS9I GGNCC 3 cut(s) 1117, 1118, 1531
AsuHPI GGTGA 1 cut(s) 467
AvaII GGWCC 1 cut(s) 1531
AxyI CCTNAGG 1 cut(s) 155
BaeGI GKGCMC 2 cut(s) 142, 1121
BanII GRGCYC 2 cut(s) 815, 1121
BarI GAAGNNNNNNTAC 2 cut(s) 699, 731
BauI CACGAG 1 cut(s) 50
BbsI GAAGAC 2 cut(s) 270, 876
Bbv12I GWGCWC 2 cut(s) 142, 815
BbvI GCAGC 4 cut(s) 124, 873, 1348, 1531
BccI CCATC 7 cut(s) 185, 218, 241, 311, 623, 1201, 1490
BciT130I CCWGG 4 cut(s) 660, 858, 1132, 1541
BciVI GTATCC 2 cut(s) 387, 782
BfaI CTAG 3 cut(s) 297, 587, 671
BfuI GTATCC 2 cut(s) 387, 782
BisI GCNGC 4 cut(s) 113, 862, 1362, 1545
BlsI GCNGC 4 cut(s) 114, 863, 1363, 1546
Bme1390I CCNGG 4 cut(s) 660, 858, 1132, 1541
Bme18I GGWCC 1 cut(s) 1531
BmgT120I GGNCC 3 cut(s) 1117, 1118, 1531
BmiI GGNNCC 3 cut(s) 546, 1119, 1191
BmrFI CCNGG 4 cut(s) 660, 858, 1132, 1541
BmsI GCATC 7 cut(s) 454, 478, 480, 739, 862, 938, 1203
BpiI GAAGAC 2 cut(s) 270, 876
BpmI CTGGAG 1 cut(s) 1061
BpuEI CTTGAG 1 cut(s) 88
BsaAI YACGTR 1 cut(s) 731
BsaBI GATNNNNATC 2 cut(s) 614, 972
BsaJI CCNNGG 2 cut(s) 1093, 1131
Bsc4I CCNNNNNNNGG 5 cut(s) 45, 156, 665, 781, 1540
Bse1I ACTGG 2 cut(s) 209, 1044
Bse21I CCTNAGG 1 cut(s) 155
Bse3DI GCAATG 1 cut(s) 748
Bse8I GATNNNNATC 2 cut(s) 614, 972
BseBI CCWGG 4 cut(s) 660, 858, 1132, 1541
BseDI CCNNGG 2 cut(s) 1093, 1131
BseGI GGATG 5 cut(s) 790, 853, 919, 1218, 1468
BseJI GATNNNNATC 2 cut(s) 614, 972
BseLI CCNNNNNNNGG 5 cut(s) 45, 156, 665, 781, 1540
BseMI GCAATG 1 cut(s) 748
BseMII CTCAG 4 cut(s) 146, 321, 798, 1470
BseNI ACTGG 2 cut(s) 209, 1044
BseRI GAGGAG 1 cut(s) 1418
BseSI GKGCMC 2 cut(s) 142, 1121
BseXI GCAGC 4 cut(s) 124, 873, 1348, 1531
BsgI GTGCAG 2 cut(s) 131, 1347
Bsh1236I CGCG 2 cut(s) 81, 136
BshFI GGCC 1 cut(s) 1119
BsiHKAI GWGCWC 2 cut(s) 142, 815
BslFI GGGAC 2 cut(s) 38, 1460
BslI CCNNNNNNNGG 5 cut(s) 45, 156, 665, 781, 1540
BsmFI GGGAC 2 cut(s) 38, 1460
BsnI GGCC 1 cut(s) 1119
Bsp120I GGGCCC 1 cut(s) 1117
Bsp1286I GDGCHC 3 cut(s) 142, 815, 1121
Bsp143I GATC 1 cut(s) 973
Bsp19I CCATGG 1 cut(s) 1093
BspACI CCGC 3 cut(s) 123, 172, 435
BspANI GGCC 1 cut(s) 1119
BspCNI CTCAG 4 cut(s) 147, 322, 799, 1471
BspFNI CGCG 2 cut(s) 81, 136
BspLI GGNNCC 3 cut(s) 546, 1119, 1191
BspPI GGATC 1 cut(s) 981
BspQI GCTCTTC 2 cut(s) 687, 964
BsrDI GCAATG 1 cut(s) 748
BsrI ACTGG 2 cut(s) 209, 1044
BssECI CCNNGG 2 cut(s) 1093, 1131
BssMI GATC 1 cut(s) 973
BssSI CACGAG 1 cut(s) 50
BssT1I CCWWGG 1 cut(s) 1093
Bst2BI CACGAG 1 cut(s) 50
Bst2UI CCWGG 4 cut(s) 660, 858, 1132, 1541
Bst4CI ACNGT 4 cut(s) 432, 759, 1310, 1493
Bst6I CTCTTC 5 cut(s) 191, 687, 964, 1056, 1395
BstBAI YACGTR 1 cut(s) 731
BstC8I GCNNGC 2 cut(s) 138, 469
BstDEI CTNAG 5 cut(s) 155, 330, 807, 1168, 1479
BstDSI CCRYGG 1 cut(s) 1093
BstENI CCTNNNNNAGG 1 cut(s) 1538
BstF5I GGATG 5 cut(s) 790, 853, 919, 1218, 1468
BstFNI CGCG 2 cut(s) 81, 136
BstHHI GCGC 2 cut(s) 81, 136
BstKTI GATC 1 cut(s) 976
BstMBI GATC 1 cut(s) 973
BstMWI GCNNNNNNNGC 3 cut(s) 131, 260, 1222
BstNI CCWGG 4 cut(s) 660, 858, 1132, 1541
BstNSI RCATGY 1 cut(s) 568
BstSCI CCNGG 4 cut(s) 658, 856, 1130, 1539
BstSLI GKGCMC 2 cut(s) 142, 1121
BstUI CGCG 2 cut(s) 81, 136
BstV1I GCAGC 4 cut(s) 124, 873, 1348, 1531
BstV2I GAAGAC 2 cut(s) 270, 876
Bsu36I CCTNAGG 1 cut(s) 155
BsuI GTATCC 2 cut(s) 387, 782
BsuRI GGCC 1 cut(s) 1119
BtgI CCRYGG 1 cut(s) 1093
BtgZI GCGATG 1 cut(s) 762
BtsCI GGATG 5 cut(s) 790, 853, 919, 1218, 1468
BtsIMutI CAGTG 5 cut(s) 428, 755, 1037, 1111, 1498
Cac8I GCNNGC 2 cut(s) 138, 469
CfoI GCGC 2 cut(s) 81, 136
Cfr13I GGNCC 3 cut(s) 1117, 1118, 1531
Csp6I GTAC 1 cut(s) 794
CviAII CATG 5 cut(s) 116, 565, 641, 910, 1094
CviQI GTAC 1 cut(s) 794
DdeI CTNAG 5 cut(s) 155, 330, 807, 1168, 1479
DpnI GATC 1 cut(s) 975
DpnII GATC 1 cut(s) 973
DraI TTTAAA 1 cut(s) 405
Eam1104I CTCTTC 5 cut(s) 191, 687, 964, 1056, 1395
EarI CTCTTC 5 cut(s) 191, 687, 964, 1056, 1395
Ecl136II GAGCTC 1 cut(s) 813
Eco130I CCWWGG 1 cut(s) 1093
Eco24I GRGCYC 2 cut(s) 815, 1121
Eco32I GATATC 2 cut(s) 790, 1414
Eco47I GGWCC 1 cut(s) 1531
Eco53kI GAGCTC 1 cut(s) 813
Eco57I CTGAAG 4 cut(s) 333, 444, 1087, 1419
Eco81I CCTNAGG 1 cut(s) 155
EcoICRI GAGCTC 1 cut(s) 813
EcoNI CCTNNNNNAGG 1 cut(s) 1538
EcoO109I RGGNCCY 2 cut(s) 1117, 1118
EcoRI GAATTC 1 cut(s) 1375
EcoRII CCWGG 4 cut(s) 658, 856, 1130, 1539
EcoRV GATATC 2 cut(s) 790, 1414
EcoT14I CCWWGG 1 cut(s) 1093
EcoT38I GRGCYC 2 cut(s) 815, 1121
ErhI CCWWGG 1 cut(s) 1093
FaeI CATG 5 cut(s) 119, 568, 644, 913, 1097
FaqI GGGAC 2 cut(s) 38, 1460
FatI CATG 5 cut(s) 115, 564, 640, 909, 1093
FauNDI CATATG 1 cut(s) 606
FblI GTMKAC 2 cut(s) 90, 1229
Fnu4HI GCNGC 4 cut(s) 113, 862, 1362, 1545
FokI GGATG 5 cut(s) 797, 840, 926, 1225, 1475
FriOI GRGCYC 2 cut(s) 815, 1121
Fsp4HI GCNGC 4 cut(s) 113, 862, 1362, 1545
FspBI CTAG 3 cut(s) 297, 587, 671
GlaI GCGC 2 cut(s) 80, 135
GluI GCNGC 4 cut(s) 113, 862, 1362, 1545
GsuI CTGGAG 1 cut(s) 1061
HaeIII GGCC 1 cut(s) 1119
HhaI GCGC 2 cut(s) 81, 136
Hin1II CATG 5 cut(s) 119, 568, 644, 913, 1097
Hin6I GCGC 2 cut(s) 79, 134
HinP1I GCGC 2 cut(s) 79, 134
HincII GTYRAC 2 cut(s) 91, 1564
HindII GTYRAC 2 cut(s) 91, 1564
HindIII AAGCTT 1 cut(s) 523
HinfI GANTC 7 cut(s) 267, 290, 1298, 1406, 1445, 1466, 1483
HphI GGTGA 1 cut(s) 467
Hpy166II GTNNAC 5 cut(s) 91, 140, 1230, 1267, 1564
Hpy188I TCNGA 5 cut(s) 481, 571, 947, 1411, 1471
Hpy188III TCNNGA 6 cut(s) 67, 362, 449, 694, 1397, 1553
Hpy8I GTNNAC 5 cut(s) 91, 140, 1230, 1267, 1564
HpyAV CCTTC 3 cut(s) 446, 1576, 1589
HpyCH4III ACNGT 4 cut(s) 432, 759, 1310, 1493
HpyCH4IV ACGT 1 cut(s) 730
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 260, 1222
HpyF3I CTNAG 5 cut(s) 155, 330, 807, 1168, 1479
HpySE526I ACGT 1 cut(s) 730
Hsp92II CATG 5 cut(s) 119, 568, 644, 913, 1097
HspAI GCGC 2 cut(s) 79, 134
Kzo9I GATC 1 cut(s) 973
LguI GCTCTTC 2 cut(s) 687, 964
LmnI GCTCC 1 cut(s) 200
Lsp1109I GCAGC 4 cut(s) 124, 873, 1348, 1531
LweI GCATC 7 cut(s) 454, 478, 480, 739, 862, 938, 1203
MaeI CTAG 3 cut(s) 297, 587, 671
MaeII ACGT 1 cut(s) 730
MaeIII GTNAC 5 cut(s) 246, 557, 1097, 1381, 1487
MalI GATC 1 cut(s) 975
MboI GATC 1 cut(s) 973
MhlI GDGCHC 3 cut(s) 142, 815, 1121
MlyI GAGTC 2 cut(s) 1415, 1475
MmeI TCCRAC 1 cut(s) 610
MseI TTAA 4 cut(s) 33, 404, 443, 818
MslI CAYNNNNRTG 1 cut(s) 553
MspA1I CMGCKG 2 cut(s) 329, 806
MspR9I CCNGG 4 cut(s) 660, 858, 1132, 1541
MvaI CCWGG 4 cut(s) 660, 858, 1132, 1541
MvnI CGCG 2 cut(s) 81, 136
MwoI GCNNNNNNNGC 3 cut(s) 131, 260, 1222
NcoI CCATGG 1 cut(s) 1093
NdeI CATATG 1 cut(s) 606
NdeII GATC 1 cut(s) 973
NlaIII CATG 5 cut(s) 119, 568, 644, 913, 1097
NlaIV GGNNCC 3 cut(s) 546, 1119, 1191
NmeAIII GCCGAG 1 cut(s) 25
NmuCI GTSAC 2 cut(s) 246, 1381
NspI RCATGY 1 cut(s) 568
PciI ACATGT 1 cut(s) 564
PciSI GCTCTTC 2 cut(s) 687, 964
PfeI GAWTC 5 cut(s) 267, 290, 1298, 1445, 1483
PflFI GACNNNGTC 1 cut(s) 1535
PflMI CCANNNNNTGG 2 cut(s) 665, 781
PkrI GCNGC 4 cut(s) 114, 863, 1363, 1546
PleI GAGTC 2 cut(s) 1414, 1474
PpsI GAGTC 2 cut(s) 1414, 1474
Ppu21I YACGTR 1 cut(s) 731
PscI ACATGT 1 cut(s) 564
Psp124BI GAGCTC 1 cut(s) 815
Psp6I CCWGG 4 cut(s) 658, 856, 1130, 1539
PspGI CCWGG 4 cut(s) 658, 856, 1130, 1539
PspN4I GGNNCC 3 cut(s) 546, 1119, 1191
PspOMI GGGCCC 1 cut(s) 1117
PspPI GGNCC 3 cut(s) 1117, 1118, 1531
PsyI GACNNNGTC 1 cut(s) 1535
PvuII CAGCTG 2 cut(s) 329, 806
RsaI GTAC 1 cut(s) 795
RsaNI GTAC 1 cut(s) 794
RseI CAYNNNNRTG 1 cut(s) 553
SacI GAGCTC 1 cut(s) 815
SalI GTCGAC 1 cut(s) 89
SapI GCTCTTC 2 cut(s) 687, 964
SaqAI TTAA 4 cut(s) 33, 404, 443, 818
SatI GCNGC 4 cut(s) 113, 862, 1362, 1545
Sau3AI GATC 1 cut(s) 973
Sau96I GGNCC 3 cut(s) 1117, 1118, 1531
SchI GAGTC 2 cut(s) 1415, 1475
ScrFI CCNGG 4 cut(s) 660, 858, 1132, 1541
SduI GDGCHC 3 cut(s) 142, 815, 1121
SfaNI GCATC 7 cut(s) 454, 478, 480, 739, 862, 938, 1203
SinI GGWCC 1 cut(s) 1531
SmiMI CAYNNNNRTG 1 cut(s) 553
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
SsiI CCGC 3 cut(s) 123, 172, 435
SspI AATATT 1 cut(s) 896
SspMI CTAG 3 cut(s) 297, 587, 671
SstI GAGCTC 1 cut(s) 815
StyD4I CCNGG 4 cut(s) 658, 856, 1130, 1539
StyI CCWWGG 1 cut(s) 1093
TaaI ACNGT 4 cut(s) 432, 759, 1310, 1493
TaiI ACGT 1 cut(s) 733
TaqI TCGA 2 cut(s) 90, 450
TaqII GACCGA 1 cut(s) 264
TfiI GAWTC 5 cut(s) 267, 290, 1298, 1445, 1483
Tru1I TTAA 4 cut(s) 33, 404, 443, 818
Tru9I TTAA 4 cut(s) 33, 404, 443, 818
TscAI CASTG 5 cut(s) 435, 762, 1044, 1111, 1498
TseFI GTSAC 2 cut(s) 246, 1381
TseI GCWGC 4 cut(s) 112, 861, 1361, 1544
Tsp45I GTSAC 2 cut(s) 246, 1381
TspDTI ATGAA 7 cut(s) 132, 282, 1074, 1166, 1388, 1458, 1536
TspRI CASTG 5 cut(s) 435, 762, 1044, 1111, 1498
Tth111I GACNNNGTC 1 cut(s) 1535
Van91I CCANNNNNTGG 2 cut(s) 665, 781
VneI GTGCAC 1 cut(s) 138
VpaK11BI GGWCC 1 cut(s) 1531
XagI CCTNNNNNAGG 1 cut(s) 1538
XapI RAATTY 3 cut(s) 17, 1048, 1375
XceI RCATGY 1 cut(s) 568
XcmI CCANNNNNNNNNTGG 2 cut(s) 622, 647
XmiI GTMKAC 2 cut(s) 90, 1229
XspI CTAG 3 cut(s) 297, 587, 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.