AT1G01940

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014300
Physical Location & Seq
Forward (+)
322886 .. 324917
2032 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G01940.1

Sequence Viewer

Length: 483 bp
ATGTCGGTAACTTTGCACACGAACCTGGGTGACATCAAGTGCGAAATCTTCTGTGACGAGGTTCCCAAGAGTGCTGAGAACTTTTTGGCGTTGTGTGCTAGTGGCTACTACGATGGTACTATCTTTCATAGAAATATCAAAGGGTTCATGATTCAAGGAGGAGACCCCAAGGGGACCGGAAAAGGAGGAACTAGCATCTGGGGCAAGAAATTCAATGATGAGATCCGAGACTCCCTTAAGCACAATGCAAGAGGGATGCTGTCAATGGCAAACAGCGGTCCAAACACCAACGGAAGCCAGTTCTTCATAACCTATGCAAAACAACCACATCTCAATGGATTATACACCATCTTTGGCAAAGTCATTCATGGCTTCGAAGTGCTTGACATTATGGAAAAGACTCAAACAGGACCAGGAGATAGGCCGCTTGCTGAGATAAGGCTAAACCGTGTGACGATCCACGCCAATCCACTTGCTGGTTAA

Protein Analysis

160

Amino Acids

17.5

Weight (kDa)

8.44

Isoelectric Point (pI)

18.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 3 - 152 8e-54 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014300)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01940
fragaria_vesca FvH4_7g12100 FvH4_7g12100
malus_domestica MD02G1201300.v1.1
prunus_persica Prupe.2G147500_v2.0.a1 Prupe.2G147500_v2.0.a1 Prupe.2G147500_v2.0.a1
pyrus_communis pycom02g16470
rosa_chinensis RchiOBHm_Chr1g0350841
rosa_laevigata RLG00000028450
rosa_multiflora Rmu_sc0006200.1_g000007 Rmu_sc0008251.1_g000002
rosa_roxburghii Rroxscaffold_4G00304470
rosa_rugosa Rorug01G0214600
rosa_samantha Rh1BG199000 Rh1DG226900
rosa_wichuraiana Rw1G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 476
AciI CCGC 2 cut(s) 276, 425
AclWI GGATC 2 cut(s) 217, 451
AcsI RAATTY 1 cut(s) 209
AfaI GTAC 1 cut(s) 118
AfiI CCNNNNNNNGG 1 cut(s) 476
AflII CTTAAG 1 cut(s) 236
AgsI TTSAA 2 cut(s) 155, 214
AjnI CCWGG 2 cut(s) 24, 412
Alw26I GTCTC 2 cut(s) 156, 222
AlwI GGATC 2 cut(s) 217, 451
AoxI GGCC 1 cut(s) 422
ApoI RAATTY 1 cut(s) 209
AspS9I GGNCC 3 cut(s) 174, 278, 410
AsuHPI GGTGA 1 cut(s) 41
AsuII TTCGAA 1 cut(s) 375
AvaII GGWCC 3 cut(s) 174, 278, 410
BccI CCATC 2 cut(s) 107, 356
BciT130I CCWGG 2 cut(s) 26, 414
BcoDI GTCTC 2 cut(s) 156, 222
BfaI CTAG 2 cut(s) 99, 192
BfrI CTTAAG 1 cut(s) 236
BisI GCNGC 1 cut(s) 425
BlsI GCNGC 1 cut(s) 426
Bme1390I CCNGG 2 cut(s) 26, 414
Bme18I GGWCC 3 cut(s) 174, 278, 410
BmgT120I GGNCC 3 cut(s) 174, 278, 410
BmiI GGNNCC 2 cut(s) 63, 175
BmrFI CCNGG 2 cut(s) 26, 414
BmsI GCATC 2 cut(s) 204, 246
Bpu14I TTCGAA 1 cut(s) 375
BsaI GGTCTC 1 cut(s) 156
BsaJI CCNNGG 2 cut(s) 25, 168
BsaWI WCCGGW 1 cut(s) 176
Bsc4I CCNNNNNNNGG 1 cut(s) 476
Bse1I ACTGG 1 cut(s) 298
BseBI CCWGG 2 cut(s) 26, 414
BseDI CCNNGG 2 cut(s) 25, 168
BseGI GGATG 1 cut(s) 261
BseLI CCNNNNNNNGG 1 cut(s) 476
BseMII CTCAG 2 cut(s) 66, 423
BseNI ACTGG 1 cut(s) 298
BseRI GAGGAG 1 cut(s) 174
BshFI GGCC 1 cut(s) 424
BsiSI CCGG 1 cut(s) 177
BslFI GGGAC 1 cut(s) 187
BslI CCNNNNNNNGG 1 cut(s) 476
BsmAI GTCTC 2 cut(s) 156, 222
BsmFI GGGAC 1 cut(s) 187
BsnI GGCC 1 cut(s) 424
Bso31I GGTCTC 1 cut(s) 156
Bsp119I TTCGAA 1 cut(s) 375
Bsp143I GATC 2 cut(s) 222, 456
BspACI CCGC 2 cut(s) 276, 425
BspANI GGCC 1 cut(s) 424
BspCNI CTCAG 2 cut(s) 67, 424
BspHI TCATGA 1 cut(s) 147
BspLI GGNNCC 2 cut(s) 63, 175
BspPI GGATC 2 cut(s) 217, 451
BspT104I TTCGAA 1 cut(s) 375
BspTI CTTAAG 1 cut(s) 236
BspTNI GGTCTC 1 cut(s) 156
BsrI ACTGG 1 cut(s) 298
BssECI CCNNGG 2 cut(s) 25, 168
BssMI GATC 2 cut(s) 222, 456
BssT1I CCWWGG 1 cut(s) 168
Bst2UI CCWGG 2 cut(s) 26, 414
Bst4CI ACNGT 1 cut(s) 449
BstAFI CTTAAG 1 cut(s) 236
BstBI TTCGAA 1 cut(s) 375
BstC8I GCNNGC 1 cut(s) 429
BstDEI CTNAG 2 cut(s) 75, 432
BstF5I GGATG 1 cut(s) 261
BstKTI GATC 2 cut(s) 225, 459
BstMAI GTCTC 2 cut(s) 156, 222
BstMBI GATC 2 cut(s) 222, 456
BstMWI GCNNNNNNNGC 2 cut(s) 95, 201
BstNI CCWGG 2 cut(s) 26, 414
BstSCI CCNGG 2 cut(s) 24, 412
BstX2I RGATCY 1 cut(s) 222
BstYI RGATCY 1 cut(s) 222
BsuRI GGCC 1 cut(s) 424
BtsCI GGATG 1 cut(s) 261
Cac8I GCNNGC 1 cut(s) 429
CciI TCATGA 1 cut(s) 147
Cfr13I GGNCC 3 cut(s) 174, 278, 410
Csp6I GTAC 1 cut(s) 117
CviAII CATG 2 cut(s) 148, 368
CviJI RGCY 5 cut(s) 105, 297, 372, 424, 442
CviKI_1 RGCY 5 cut(s) 105, 297, 372, 424, 442
CviQI GTAC 1 cut(s) 117
DdeI CTNAG 2 cut(s) 75, 432
DpnI GATC 2 cut(s) 224, 458
DpnII GATC 2 cut(s) 222, 456
Eco130I CCWWGG 1 cut(s) 168
Eco31I GGTCTC 1 cut(s) 156
Eco47I GGWCC 3 cut(s) 174, 278, 410
EcoRII CCWGG 2 cut(s) 24, 412
EcoT14I CCWWGG 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 2 cut(s) 151, 371
FaiI YATR 7 cut(s) 129, 149, 308, 315, 343, 369, 392
FaqI GGGAC 1 cut(s) 187
FatI CATG 2 cut(s) 147, 367
Fnu4HI GCNGC 1 cut(s) 425
FokI GGATG 1 cut(s) 268
Fsp4HI GCNGC 1 cut(s) 425
FspBI CTAG 2 cut(s) 99, 192
GluI GCNGC 1 cut(s) 425
HaeIII GGCC 1 cut(s) 424
HapII CCGG 1 cut(s) 177
Hin1II CATG 2 cut(s) 151, 371
HinfI GANTC 3 cut(s) 151, 230, 400
HpaII CCGG 1 cut(s) 177
HphI GGTGA 1 cut(s) 41
Hpy188I TCNGA 1 cut(s) 227
Hpy188III TCNNGA 1 cut(s) 148
HpyCH4III ACNGT 1 cut(s) 449
HpyCH4V TGCA 3 cut(s) 16, 248, 317
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 201
HpyF3I CTNAG 2 cut(s) 75, 432
Hsp92II CATG 2 cut(s) 151, 371
Kzo9I GATC 2 cut(s) 222, 456
LpnPI CCDG 9 cut(s) 11, 38, 184, 190, 311, 393, 399, 426, 462
LweI GCATC 2 cut(s) 204, 246
MaeI CTAG 2 cut(s) 99, 192
MaeIII GTNAC 4 cut(s) 7, 29, 53, 451
MalI GATC 2 cut(s) 224, 458
MboI GATC 2 cut(s) 222, 456
MboII GAAGA 2 cut(s) 40, 295
MflI RGATCY 1 cut(s) 222
MluCI AATT 1 cut(s) 209
MlyI GAGTC 2 cut(s) 224, 394
MnlI CCTC 4 cut(s) 52, 152, 179, 245
MseI TTAA 2 cut(s) 237, 481
MslI CAYNNNNRTG 1 cut(s) 333
MspA1I CMGCKG 1 cut(s) 276
MspCI CTTAAG 1 cut(s) 236
MspI CCGG 1 cut(s) 177
MspR9I CCNGG 2 cut(s) 26, 414
MvaI CCWGG 2 cut(s) 26, 414
MwoI GCNNNNNNNGC 2 cut(s) 95, 201
NdeII GATC 2 cut(s) 222, 456
NlaIII CATG 2 cut(s) 151, 371
NlaIV GGNNCC 2 cut(s) 63, 175
NmuCI GTSAC 3 cut(s) 29, 53, 451
NspV TTCGAA 1 cut(s) 375
PagI TCATGA 1 cut(s) 147
PfeI GAWTC 1 cut(s) 151
PflMI CCANNNNNTGG 1 cut(s) 476
PkrI GCNGC 1 cut(s) 426
PleI GAGTC 2 cut(s) 224, 394
PpsI GAGTC 2 cut(s) 224, 394
Psp6I CCWGG 2 cut(s) 24, 412
PspGI CCWGG 2 cut(s) 24, 412
PspN4I GGNNCC 2 cut(s) 63, 175
PspPI GGNCC 3 cut(s) 174, 278, 410
PsuI RGATCY 1 cut(s) 222
RsaI GTAC 1 cut(s) 118
RsaNI GTAC 1 cut(s) 117
RseI CAYNNNNRTG 1 cut(s) 333
SaqAI TTAA 2 cut(s) 237, 481
SatI GCNGC 1 cut(s) 425
Sau3AI GATC 2 cut(s) 222, 456
Sau96I GGNCC 3 cut(s) 174, 278, 410
SchI GAGTC 2 cut(s) 224, 394
ScrFI CCNGG 2 cut(s) 26, 414
SetI ASST 3 cut(s) 27, 63, 314
SfaNI GCATC 2 cut(s) 204, 246
SfuI TTCGAA 1 cut(s) 375
SinI GGWCC 3 cut(s) 174, 278, 410
SmiMI CAYNNNNRTG 1 cut(s) 333
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 1 cut(s) 209
SsiI CCGC 2 cut(s) 276, 425
SspMI CTAG 2 cut(s) 99, 192
StyD4I CCNGG 2 cut(s) 24, 412
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 1 cut(s) 449
TaqI TCGA 1 cut(s) 375
TasI AATT 1 cut(s) 209
TauI GCSGC 1 cut(s) 427
TfiI GAWTC 1 cut(s) 151
Tru1I TTAA 2 cut(s) 237, 481
Tru9I TTAA 2 cut(s) 237, 481
TseFI GTSAC 3 cut(s) 29, 53, 451
Tsp45I GTSAC 3 cut(s) 29, 53, 451
TspDTI ATGAA 4 cut(s) 116, 136, 295, 356
TspGWI ACGGA 1 cut(s) 306
Van91I CCANNNNNTGG 1 cut(s) 476
Vha464I CTTAAG 1 cut(s) 236
VpaK11BI GGWCC 3 cut(s) 174, 278, 410
XapI RAATTY 1 cut(s) 209
XspI CTAG 2 cut(s) 99, 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.