FvH4_7g12100

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0014300
Physical Location & Seq
Reverse (-)
11015127 .. 11017256
2130 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g12100.t1

Sequence Viewer

Length: 483 bp
ATGTCTGTCACTCTTCACACAAATCTCGGGGATATCAAGTGCGAGGTCTTCTGCGACGAGGTCCCTAAAACCGCCGAGAATTTCTTGGCGCTGTGTGCGAGTGGTTATTATGATGGGACCATATTTCATAGGAATATCAAGGGTTTTATGATACAAGGTGGAGACCCGACTGGTACAGGGAAAGGAGGGACTAGCATCTGGGGCAAGAAGTTCAATGATGAGATAAGGGAGTCTCTCAAGCACAATGCAAGGGGAATTATGTCAATGGCAAATAGTGGTCCCAATACAAATGGAAGTCAGTTCTTCATTAGCTATGCGAAGCAGCCTCATCTCAATGGATTGTACACTGTGTTTGGTAAAGTGATTCATGGGTTTGAGGTTCTTGATATCATGGAAAAGACTCAAACTGGAGCAGGTGATCGTCCTCTTGCAGAAATTAGGCTTAATCGAGTGACTATACATGCTAATCCTCTTGCTGGTTAG

Protein Analysis

161

Amino Acids

17.44

Weight (kDa)

7.77

Isoelectric Point (pI)

18.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 3 - 152 3.1e-54 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014300)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01940
fragaria_vesca FvH4_7g12100 FvH4_7g12100
malus_domestica MD02G1201300.v1.1
prunus_persica Prupe.2G147500_v2.0.a1 Prupe.2G147500_v2.0.a1 Prupe.2G147500_v2.0.a1
pyrus_communis pycom02g16470
rosa_chinensis RchiOBHm_Chr1g0350841
rosa_laevigata RLG00000028450
rosa_multiflora Rmu_sc0006200.1_g000007 Rmu_sc0008251.1_g000002
rosa_roxburghii Rroxscaffold_4G00304470
rosa_rugosa Rorug01G0214600
rosa_samantha Rh1BG199000 Rh1DG226900
rosa_wichuraiana Rw1G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 404
Acc36I ACCTGC 1 cut(s) 404
AciI CCGC 1 cut(s) 72
AcsI RAATTY 1 cut(s) 79
AfaI GTAC 2 cut(s) 175, 344
AfiI CCNNNNNNNGG 1 cut(s) 476
AgsI TTSAA 1 cut(s) 214
AluBI AGCT 1 cut(s) 312
AluI AGCT 1 cut(s) 312
Alw26I GTCTC 2 cut(s) 156, 237
Ama87I CYCGRG 1 cut(s) 26
ApeKI GCWGC 1 cut(s) 322
ApoI RAATTY 1 cut(s) 79
AspLEI GCGC 1 cut(s) 91
AspS9I GGNCC 3 cut(s) 61, 117, 278
AsuHPI GGTGA 1 cut(s) 428
AvaI CYCGRG 1 cut(s) 26
AvaII GGWCC 3 cut(s) 61, 117, 278
BbsI GAAGAC 1 cut(s) 40
BbvI GCAGC 1 cut(s) 334
BccI CCATC 1 cut(s) 107
BcoDI GTCTC 2 cut(s) 156, 237
BfaI CTAG 1 cut(s) 192
BfoI RGCGCY 1 cut(s) 92
BfuAI ACCTGC 1 cut(s) 404
BisI GCNGC 1 cut(s) 323
BlsI GCNGC 1 cut(s) 324
Bme18I GGWCC 3 cut(s) 61, 117, 278
BmeT110I CYCGRG 1 cut(s) 26
BmgT120I GGNCC 3 cut(s) 61, 117, 278
BmiI GGNNCC 3 cut(s) 63, 118, 280
BmsI GCATC 1 cut(s) 204
BpiI GAAGAC 1 cut(s) 40
BpmI CTGGAG 1 cut(s) 429
BpuEI CTTGAG 1 cut(s) 221
BsaI GGTCTC 1 cut(s) 156
Bsc4I CCNNNNNNNGG 1 cut(s) 476
Bse1I ACTGG 2 cut(s) 175, 412
BseLI CCNNNNNNNGG 1 cut(s) 476
BseNI ACTGG 2 cut(s) 175, 412
BseXI GCAGC 1 cut(s) 334
BsiHKCI CYCGRG 1 cut(s) 26
BslFI GGGAC 4 cut(s) 47, 130, 202, 264
BslI CCNNNNNNNGG 1 cut(s) 476
BsmAI GTCTC 2 cut(s) 156, 237
BsmFI GGGAC 4 cut(s) 47, 130, 202, 264
Bso31I GGTCTC 1 cut(s) 156
BsoBI CYCGRG 1 cut(s) 26
Bsp1407I TGTACA 1 cut(s) 342
Bsp143I GATC 1 cut(s) 418
BspACI CCGC 1 cut(s) 72
BspLI GGNNCC 3 cut(s) 63, 118, 280
BspMI ACCTGC 1 cut(s) 404
BspTNI GGTCTC 1 cut(s) 156
BsrGI TGTACA 1 cut(s) 342
BsrI ACTGG 2 cut(s) 175, 412
BssMI GATC 1 cut(s) 418
Bst4CI ACNGT 1 cut(s) 349
Bst6I CTCTTC 1 cut(s) 18
BstAUI TGTACA 1 cut(s) 342
BstH2I RGCGCY 1 cut(s) 92
BstHHI GCGC 1 cut(s) 91
BstKTI GATC 1 cut(s) 421
BstMAI GTCTC 2 cut(s) 156, 237
BstMBI GATC 1 cut(s) 418
BstMWI GCNNNNNNNGC 2 cut(s) 95, 201
BstNSI RCATGY 1 cut(s) 464
BstV1I GCAGC 1 cut(s) 334
BstV2I GAAGAC 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 345
BveI ACCTGC 1 cut(s) 404
CfoI GCGC 1 cut(s) 91
Cfr13I GGNCC 3 cut(s) 61, 117, 278
Csp6I GTAC 2 cut(s) 174, 343
CviAII CATG 3 cut(s) 368, 391, 461
CviJI RGCY 3 cut(s) 312, 325, 442
CviKI_1 RGCY 3 cut(s) 312, 325, 442
CviQI GTAC 2 cut(s) 174, 343
DpnI GATC 1 cut(s) 420
DpnII GATC 1 cut(s) 418
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
Eco31I GGTCTC 1 cut(s) 156
Eco32I GATATC 2 cut(s) 34, 388
Eco47I GGWCC 3 cut(s) 61, 117, 278
Eco88I CYCGRG 1 cut(s) 26
EcoO109I RGGNCCY 1 cut(s) 61
EcoRV GATATC 2 cut(s) 34, 388
FaeI CATG 3 cut(s) 371, 394, 464
FaqI GGGAC 4 cut(s) 47, 130, 202, 264
FatI CATG 3 cut(s) 367, 390, 460
Fnu4HI GCNGC 1 cut(s) 323
Fsp4HI GCNGC 1 cut(s) 323
FspBI CTAG 1 cut(s) 192
GlaI GCGC 1 cut(s) 90
GluI GCNGC 1 cut(s) 323
GsuI CTGGAG 1 cut(s) 429
HaeII RGCGCY 1 cut(s) 92
HhaI GCGC 1 cut(s) 91
Hin1II CATG 3 cut(s) 371, 394, 464
Hin6I GCGC 1 cut(s) 89
HinP1I GCGC 1 cut(s) 89
HinfI GANTC 3 cut(s) 230, 364, 400
HphI GGTGA 1 cut(s) 428
Hpy166II GTNNAC 1 cut(s) 345
Hpy188III TCNNGA 1 cut(s) 383
Hpy8I GTNNAC 1 cut(s) 345
Hpy99I CGWCG 1 cut(s) 59
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4V TGCA 2 cut(s) 248, 431
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 201
Hsp92II CATG 3 cut(s) 371, 394, 464
HspAI GCGC 1 cut(s) 89
Kzo9I GATC 1 cut(s) 418
LmnI GCTCC 1 cut(s) 410
LpnPI CCDG 6 cut(s) 156, 162, 184, 393, 399, 462
Lsp1109I GCAGC 1 cut(s) 334
LweI GCATC 1 cut(s) 204
MaeI CTAG 1 cut(s) 192
MaeIII GTNAC 2 cut(s) 7, 451
MalI GATC 1 cut(s) 420
MboI GATC 1 cut(s) 418
MboII GAAGA 3 cut(s) 5, 40, 295
MluCI AATT 3 cut(s) 79, 255, 435
MlyI GAGTC 2 cut(s) 239, 394
MnlI CCTC 7 cut(s) 37, 52, 179, 336, 370, 435, 480
MseI TTAA 1 cut(s) 444
MslI CAYNNNNRTG 1 cut(s) 333
MwoI GCNNNNNNNGC 2 cut(s) 95, 201
NdeII GATC 1 cut(s) 418
NlaIII CATG 3 cut(s) 371, 394, 464
NlaIV GGNNCC 3 cut(s) 63, 118, 280
NmeAIII GCCGAG 1 cut(s) 100
NmuCI GTSAC 2 cut(s) 7, 451
NspI RCATGY 1 cut(s) 464
PaqCI CACCTGC 1 cut(s) 404
PfeI GAWTC 1 cut(s) 364
PflFI GACNNNGTC 1 cut(s) 59
PkrI GCNGC 1 cut(s) 324
PleI GAGTC 2 cut(s) 238, 394
PpsI GAGTC 2 cut(s) 238, 394
PpuMI RGGWCCY 1 cut(s) 61
Psp5II RGGWCCY 1 cut(s) 61
PspN4I GGNNCC 3 cut(s) 63, 118, 280
PspPI GGNCC 3 cut(s) 61, 117, 278
PspPPI RGGWCCY 1 cut(s) 61
PsyI GACNNNGTC 1 cut(s) 59
RsaI GTAC 2 cut(s) 175, 344
RsaNI GTAC 2 cut(s) 174, 343
RseI CAYNNNNRTG 1 cut(s) 333
SaqAI TTAA 1 cut(s) 444
SatI GCNGC 1 cut(s) 323
Sau3AI GATC 1 cut(s) 418
Sau96I GGNCC 3 cut(s) 61, 117, 278
SchI GAGTC 2 cut(s) 239, 394
SetI ASST 6 cut(s) 48, 63, 160, 314, 381, 418
SfaNI GCATC 1 cut(s) 204
SinI GGWCC 3 cut(s) 61, 117, 278
SmiMI CAYNNNNRTG 1 cut(s) 333
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 3 cut(s) 79, 255, 435
SsiI CCGC 1 cut(s) 72
SspMI CTAG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 349
TaqI TCGA 1 cut(s) 448
TasI AATT 3 cut(s) 79, 255, 435
TatI WGTACW 1 cut(s) 342
TfiI GAWTC 1 cut(s) 364
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TscAI CASTG 1 cut(s) 352
TseFI GTSAC 2 cut(s) 7, 451
TseI GCWGC 1 cut(s) 322
Tsp45I GTSAC 2 cut(s) 7, 451
TspDTI ATGAA 3 cut(s) 116, 295, 356
TspRI CASTG 1 cut(s) 352
Tth111I GACNNNGTC 1 cut(s) 59
VpaK11BI GGWCC 3 cut(s) 61, 117, 278
XapI RAATTY 1 cut(s) 79
XceI RCATGY 1 cut(s) 464
XspI CTAG 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.