Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0014300

Physical Location & Seq

Genomic Coordinates Reverse (-)

20371342 .. 20373425

Gene Structure 2084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G147500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGTCAGTCACTCTGCACACAAATCTGGGCGACATCAAATGCGAGATTTTTTGCGACGAGGTCCCCAAAACCGCCGAGAATTTTTTGGCACTATGTGCCAGCGGTTATTATGATGGAACCATATTTCATAGAAATATCAAAGGGTTTATGATACAAGGTGGAGACCCAACAGGTACAGGCAAGGGTGGAACTAGTATATGGGGCAAGAAGTTCAATGATGAGATAAGAGAGTCTCTAAAGCACAATGCTAGGGGAATGCTATCAATGGCAAATAGTGGTCCAAATACAAATGGAAGCCAGTTCTTCATTAATTATGCGAAGCAGCCTCATCTAAATGGATTGTACACTGTGTTTGGCAAAGTGATCCATGGGTTTGAAGTTCTTGATATCATGGAAAAGACTCCAACTGGACCTGGGGATCGACCTCTTGCTGAGATCAGGCTCAATCGAGTGACCATTCATGCTAACCCGCTTGCTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

161

Amino Acids

17.47

Weight (kDa)

7.77

Isoelectric Point (pI)

18.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01940
fragaria_vesca	FvH4_7g12100 FvH4_7g12100
malus_domestica	MD02G1201300.v1.1
prunus_persica	Prupe.2G147500_v2.0.a1 Prupe.2G147500_v2.0.a1 Prupe.2G147500_v2.0.a1
pyrus_communis	pycom02g16470
rosa_chinensis	RchiOBHm_Chr1g0350841
rosa_laevigata	RLG00000028450
rosa_multiflora	Rmu_sc0006200.1_g000007 Rmu_sc0008251.1_g000002
rosa_roxburghii	Rroxscaffold_4G00304470
rosa_rugosa	Rorug01G0214600
rosa_samantha	Rh1BG199000 Rh1DG226900
rosa_wichuraiana	Rw1G019830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	72, 102, 470
AclWI	GGATC	2 cut(s)	358, 426
AcsI	RAATTY	1 cut(s)	79
AdeI	CACNNNGTG	1 cut(s)	95
AfaI	GTAC	2 cut(s)	175, 344
AfiI	CCNNNNNNNGG	1 cut(s)	476
AgsI	TTSAA	2 cut(s)	214, 377
AhlI	ACTAGT	1 cut(s)	191
AjnI	CCWGG	1 cut(s)	412
Alw26I	GTCTC	2 cut(s)	156, 237
AlwI	GGATC	2 cut(s)	358, 426
ApeKI	GCWGC	1 cut(s)	322
ApoI	RAATTY	1 cut(s)	79
AseI	ATTAAT	1 cut(s)	309
AspS9I	GGNCC	3 cut(s)	61, 278, 410
AvaII	GGWCC	3 cut(s)	61, 278, 410
BbvI	GCAGC	1 cut(s)	334
BccI	CCATC	1 cut(s)	107
BciT130I	CCWGG	1 cut(s)	414
BcoDI	GTCTC	2 cut(s)	156, 237
BcuI	ACTAGT	1 cut(s)	191
BfaI	CTAG	2 cut(s)	192, 249
BisI	GCNGC	1 cut(s)	323
BlsI	GCNGC	1 cut(s)	324
Bme1390I	CCNGG	1 cut(s)	414
Bme18I	GGWCC	3 cut(s)	61, 278, 410
BmgT120I	GGNCC	3 cut(s)	61, 278, 410
BmiI	GGNNCC	2 cut(s)	63, 118
BmrFI	CCNGG	1 cut(s)	414
BsaI	GGTCTC	1 cut(s)	156
BsaJI	CCNNGG	2 cut(s)	367, 413
Bsc4I	CCNNNNNNNGG	1 cut(s)	476
Bse1I	ACTGG	2 cut(s)	298, 412
BseBI	CCWGG	1 cut(s)	414
BseDI	CCNNGG	2 cut(s)	367, 413
BseLI	CCNNNNNNNGG	1 cut(s)	476
BseMII	CTCAG	1 cut(s)	423
BseNI	ACTGG	2 cut(s)	298, 412
BseXI	GCAGC	1 cut(s)	334
BseYI	CCCAGC	1 cut(s)	476
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	1 cut(s)	476
BsmAI	GTCTC	2 cut(s)	156, 237
BsmFI	GGGAC	1 cut(s)	47
BsmI	GAATGC	1 cut(s)	261
Bso31I	GGTCTC	1 cut(s)	156
Bsp1407I	TGTACA	1 cut(s)	342
Bsp143I	GATC	3 cut(s)	363, 418, 435
Bsp19I	CCATGG	1 cut(s)	367
BspACI	CCGC	3 cut(s)	72, 102, 470
BspCNI	CTCAG	1 cut(s)	424
BspLI	GGNNCC	2 cut(s)	63, 118
BspPI	GGATC	2 cut(s)	358, 426
BspTNI	GGTCTC	1 cut(s)	156
BsrGI	TGTACA	1 cut(s)	342
BsrI	ACTGG	2 cut(s)	298, 412
BssECI	CCNNGG	2 cut(s)	367, 413
BssMI	GATC	3 cut(s)	363, 418, 435
BssT1I	CCWWGG	1 cut(s)	367
Bst2UI	CCWGG	1 cut(s)	414
Bst4CI	ACNGT	1 cut(s)	349
BstAPI	GCANNNNNTGC	1 cut(s)	95
BstAUI	TGTACA	1 cut(s)	342
BstC8I	GCNNGC	2 cut(s)	100, 474
BstDEI	CTNAG	1 cut(s)	432
BstDSI	CCRYGG	1 cut(s)	367
BstKTI	GATC	3 cut(s)	366, 421, 438
BstMAI	GTCTC	2 cut(s)	156, 237
BstMBI	GATC	3 cut(s)	363, 418, 435
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNI	CCWGG	1 cut(s)	414
BstSCI	CCNGG	1 cut(s)	412
BstV1I	GCAGC	1 cut(s)	334
BtgI	CCRYGG	1 cut(s)	367
BtsIMutI	CAGTG	1 cut(s)	345
Cac8I	GCNNGC	2 cut(s)	100, 474
Cfr13I	GGNCC	3 cut(s)	61, 278, 410
Csp6I	GTAC	2 cut(s)	174, 343
CviAII	CATG	3 cut(s)	368, 391, 461
CviJI	RGCY	3 cut(s)	297, 325, 442
CviKI_1	RGCY	3 cut(s)	297, 325, 442
CviQI	GTAC	2 cut(s)	174, 343
DdeI	CTNAG	1 cut(s)	432
DpnI	GATC	3 cut(s)	365, 420, 437
DpnII	GATC	3 cut(s)	363, 418, 435
DraIII	CACNNNGTG	1 cut(s)	95
Eco130I	CCWWGG	1 cut(s)	367
Eco31I	GGTCTC	1 cut(s)	156
Eco32I	GATATC	1 cut(s)	388
Eco47I	GGWCC	3 cut(s)	61, 278, 410
EcoO109I	RGGNCCY	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	412
EcoRV	GATATC	1 cut(s)	388
EcoT14I	CCWWGG	1 cut(s)	367
ErhI	CCWWGG	1 cut(s)	367
FaeI	CATG	3 cut(s)	371, 394, 464
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	3 cut(s)	367, 390, 460
FauI	CCCGC	1 cut(s)	477
Fnu4HI	GCNGC	1 cut(s)	323
Fsp4HI	GCNGC	1 cut(s)	323
FspBI	CTAG	2 cut(s)	192, 249
GluI	GCNGC	1 cut(s)	323
GsaI	CCCAGC	1 cut(s)	480
Hin1II	CATG	3 cut(s)	371, 394, 464
HinfI	GANTC	2 cut(s)	230, 400
Hpy166II	GTNNAC	1 cut(s)	345
Hpy188III	TCNNGA	1 cut(s)	383
Hpy8I	GTNNAC	1 cut(s)	345
Hpy99I	CGWCG	1 cut(s)	59
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4V	TGCA	1 cut(s)	16
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	1 cut(s)	432
Hsp92II	CATG	3 cut(s)	371, 394, 464
Kzo9I	GATC	3 cut(s)	363, 418, 435
Lsp1109I	GCAGC	1 cut(s)	334
MaeI	CTAG	2 cut(s)	192, 249
MaeIII	GTNAC	2 cut(s)	7, 451
MalI	GATC	3 cut(s)	365, 420, 437
MboI	GATC	3 cut(s)	363, 418, 435
MboII	GAAGA	1 cut(s)	295
MluCI	AATT	2 cut(s)	79, 310
MlyI	GAGTC	2 cut(s)	239, 394
MmeI	TCCRAC	1 cut(s)	428
MnlI	CCTC	3 cut(s)	52, 336, 435
MseI	TTAA	1 cut(s)	309
MslI	CAYNNNNRTG	1 cut(s)	333
MspA1I	CMGCKG	1 cut(s)	102
MspR9I	CCNGG	1 cut(s)	414
Mva1269I	GAATGC	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	414
MwoI	GCNNNNNNNGC	1 cut(s)	95
NcoI	CCATGG	1 cut(s)	367
NdeII	GATC	3 cut(s)	363, 418, 435
NlaIII	CATG	3 cut(s)	371, 394, 464
NlaIV	GGNNCC	2 cut(s)	63, 118
NmeAIII	GCCGAG	1 cut(s)	100
NmuCI	GTSAC	2 cut(s)	7, 451
PctI	GAATGC	1 cut(s)	261
PflFI	GACNNNGTC	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	324
PleI	GAGTC	2 cut(s)	238, 394
PpsI	GAGTC	2 cut(s)	238, 394
PpuMI	RGGWCCY	1 cut(s)	61
PshBI	ATTAAT	1 cut(s)	309
Psp5II	RGGWCCY	1 cut(s)	61
Psp6I	CCWGG	1 cut(s)	412
PspFI	CCCAGC	1 cut(s)	476
PspGI	CCWGG	1 cut(s)	412
PspN4I	GGNNCC	2 cut(s)	63, 118
PspPI	GGNCC	3 cut(s)	61, 278, 410
PspPPI	RGGWCCY	1 cut(s)	61
PsyI	GACNNNGTC	1 cut(s)	59
RsaI	GTAC	2 cut(s)	175, 344
RsaNI	GTAC	2 cut(s)	174, 343
RseI	CAYNNNNRTG	1 cut(s)	333
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	1 cut(s)	323
Sau3AI	GATC	3 cut(s)	363, 418, 435
Sau96I	GGNCC	3 cut(s)	61, 278, 410
SchI	GAGTC	2 cut(s)	239, 394
ScrFI	CCNGG	1 cut(s)	414
SetI	ASST	5 cut(s)	63, 160, 175, 415, 427
SinI	GGWCC	3 cut(s)	61, 278, 410
SmiMI	CAYNNNNRTG	1 cut(s)	333
SpeI	ACTAGT	1 cut(s)	191
Sse9I	AATT	2 cut(s)	79, 310
SsiI	CCGC	3 cut(s)	72, 102, 470
SspMI	CTAG	2 cut(s)	192, 249
StyD4I	CCNGG	1 cut(s)	412
StyI	CCWWGG	1 cut(s)	367
TaaI	ACNGT	1 cut(s)	349
TaqI	TCGA	2 cut(s)	421, 448
TasI	AATT	2 cut(s)	79, 310
TatI	WGTACW	1 cut(s)	342
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	1 cut(s)	352
TseFI	GTSAC	2 cut(s)	7, 451
TseI	GCWGC	1 cut(s)	322
Tsp45I	GTSAC	2 cut(s)	7, 451
TspDTI	ATGAA	3 cut(s)	116, 295, 449
TspRI	CASTG	1 cut(s)	352
Tth111I	GACNNNGTC	1 cut(s)	59
VpaK11BI	GGWCC	3 cut(s)	61, 278, 410
VspI	ATTAAT	1 cut(s)	309
XapI	RAATTY	1 cut(s)	79
XspI	CTAG	2 cut(s)	192, 249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.