MD02G1201300.v1.1

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0014300
Physical Location & Seq
Forward (+)
19895874 .. 19897921
2048 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1201300.v1.1.491

Sequence Viewer

Length: 483 bp
ATGTCGGTCACTCTGCACACGAATCTGGGCGACATCAAGTGCGAAATTTTTTGCGATGAGGTCCCCAAAACCGCCGAGAATTTTTTGGCATTATGTGCCAGCGGGTATTATGATGGTACGATATTTCATAGAAACATCAAAGGTTTTATGATACAAGGTGGAGACCCAACGGGTACAGGCAAAGGGGGGACGAGTATATGGGGCAAGAAGTTTAATGATGAGATAAGAGAGTCTCTCAAGCACAATGCAAGGGGGATACTATCAATGGCAAATAGTGGTCCCAATACCAATGGAAGTCAGTTCTTCATCAGTTATGCAAAGGCGGCACATCTAAATGGGTTGTACACCGTGTTTGGCAAAGTTATACATGGGTTTGAAGTTCTTGACATCATGGAAAAGACTCAAACTGGACCTGGGGATCGTCCTCTTGCTGAGATCAGGCTCAATCGAGTGACCATACATGCTAACCCGCTTGCTGGCTAG

Protein Analysis

161

Amino Acids

17.37

Weight (kDa)

7.77

Isoelectric Point (pI)

15.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 3 - 152 2.9e-54 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014300)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01940
fragaria_vesca FvH4_7g12100 FvH4_7g12100
malus_domestica MD02G1201300.v1.1
prunus_persica Prupe.2G147500_v2.0.a1 Prupe.2G147500_v2.0.a1 Prupe.2G147500_v2.0.a1
pyrus_communis pycom02g16470
rosa_chinensis RchiOBHm_Chr1g0350841
rosa_laevigata RLG00000028450
rosa_multiflora Rmu_sc0006200.1_g000007 Rmu_sc0008251.1_g000002
rosa_roxburghii Rroxscaffold_4G00304470
rosa_rugosa Rorug01G0214600
rosa_samantha Rh1BG199000 Rh1DG226900
rosa_wichuraiana Rw1G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 72, 102, 323, 470
AclWI GGATC 1 cut(s) 426
AcsI RAATTY 2 cut(s) 45, 79
AfaI GTAC 3 cut(s) 118, 175, 344
AfiI CCNNNNNNNGG 1 cut(s) 476
AgsI TTSAA 1 cut(s) 377
AjnI CCWGG 1 cut(s) 412
Alw26I GTCTC 2 cut(s) 156, 237
AlwI GGATC 1 cut(s) 426
ApoI RAATTY 2 cut(s) 45, 79
AspS9I GGNCC 3 cut(s) 61, 278, 410
AvaII GGWCC 3 cut(s) 61, 278, 410
BccI CCATC 1 cut(s) 107
BciT130I CCWGG 1 cut(s) 414
BciVI GTATCC 1 cut(s) 249
BcoDI GTCTC 2 cut(s) 156, 237
BfaI CTAG 1 cut(s) 481
BfuI GTATCC 1 cut(s) 249
BisI GCNGC 1 cut(s) 324
BlsI GCNGC 1 cut(s) 325
Bme1390I CCNGG 1 cut(s) 414
Bme18I GGWCC 3 cut(s) 61, 278, 410
BmgT120I GGNCC 3 cut(s) 61, 278, 410
BmiI GGNNCC 2 cut(s) 63, 280
BmrFI CCNGG 1 cut(s) 414
BplI GAGNNNNNCTC 2 cut(s) 219, 251
BpuEI CTTGAG 1 cut(s) 221
BsaI GGTCTC 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 413
Bsc4I CCNNNNNNNGG 1 cut(s) 476
Bse1I ACTGG 1 cut(s) 412
BseBI CCWGG 1 cut(s) 414
BseDI CCNNGG 1 cut(s) 413
BseLI CCNNNNNNNGG 1 cut(s) 476
BseMII CTCAG 1 cut(s) 423
BseNI ACTGG 1 cut(s) 412
BslFI GGGAC 3 cut(s) 47, 202, 264
BslI CCNNNNNNNGG 1 cut(s) 476
BsmAI GTCTC 2 cut(s) 156, 237
BsmFI GGGAC 3 cut(s) 47, 202, 264
Bso31I GGTCTC 1 cut(s) 156
Bsp1407I TGTACA 1 cut(s) 342
Bsp143I GATC 2 cut(s) 418, 435
BspACI CCGC 4 cut(s) 72, 102, 323, 470
BspCNI CTCAG 1 cut(s) 424
BspLI GGNNCC 2 cut(s) 63, 280
BspPI GGATC 1 cut(s) 426
BspTNI GGTCTC 1 cut(s) 156
BsrGI TGTACA 1 cut(s) 342
BsrI ACTGG 1 cut(s) 412
BssECI CCNNGG 1 cut(s) 413
BssMI GATC 2 cut(s) 418, 435
Bst2UI CCWGG 1 cut(s) 414
Bst4CI ACNGT 1 cut(s) 349
BstAPI GCANNNNNTGC 1 cut(s) 95
BstAUI TGTACA 1 cut(s) 342
BstC8I GCNNGC 3 cut(s) 100, 474, 478
BstDEI CTNAG 1 cut(s) 432
BstKTI GATC 2 cut(s) 421, 438
BstMAI GTCTC 2 cut(s) 156, 237
BstMBI GATC 2 cut(s) 418, 435
BstMWI GCNNNNNNNGC 2 cut(s) 95, 323
BstNI CCWGG 1 cut(s) 414
BstNSI RCATGY 1 cut(s) 464
BstSCI CCNGG 1 cut(s) 412
BsuI GTATCC 1 cut(s) 249
BtgZI GCGATG 1 cut(s) 69
Cac8I GCNNGC 3 cut(s) 100, 474, 478
Cfr13I GGNCC 3 cut(s) 61, 278, 410
Csp6I GTAC 3 cut(s) 117, 174, 343
CviAII CATG 3 cut(s) 368, 391, 461
CviJI RGCY 2 cut(s) 442, 480
CviKI_1 RGCY 2 cut(s) 442, 480
CviQI GTAC 3 cut(s) 117, 174, 343
DdeI CTNAG 1 cut(s) 432
DpnI GATC 2 cut(s) 420, 437
DpnII GATC 2 cut(s) 418, 435
Eco31I GGTCTC 1 cut(s) 156
Eco47I GGWCC 3 cut(s) 61, 278, 410
EcoO109I RGGNCCY 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 412
FaeI CATG 3 cut(s) 371, 394, 464
FaqI GGGAC 3 cut(s) 47, 202, 264
FatI CATG 3 cut(s) 367, 390, 460
FauI CCCGC 2 cut(s) 95, 477
Fnu4HI GCNGC 1 cut(s) 324
Fsp4HI GCNGC 1 cut(s) 324
FspBI CTAG 1 cut(s) 481
GluI GCNGC 1 cut(s) 324
Hin1II CATG 3 cut(s) 371, 394, 464
HinfI GANTC 3 cut(s) 22, 230, 400
Hpy166II GTNNAC 1 cut(s) 345
Hpy188III TCNNGA 1 cut(s) 383
Hpy8I GTNNAC 1 cut(s) 345
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4V TGCA 3 cut(s) 16, 248, 317
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 323
HpyF3I CTNAG 1 cut(s) 432
Hsp92II CATG 3 cut(s) 371, 394, 464
Kzo9I GATC 2 cut(s) 418, 435
LpnPI CCDG 8 cut(s) 11, 112, 162, 393, 399, 424, 426, 462
MaeI CTAG 1 cut(s) 481
MaeIII GTNAC 2 cut(s) 7, 451
MalI GATC 2 cut(s) 420, 437
MboI GATC 2 cut(s) 418, 435
MboII GAAGA 1 cut(s) 295
MluCI AATT 2 cut(s) 45, 79
MlyI GAGTC 2 cut(s) 239, 394
MnlI CCTC 2 cut(s) 52, 435
MseI TTAA 1 cut(s) 213
MslI CAYNNNNRTG 1 cut(s) 333
MspA1I CMGCKG 1 cut(s) 102
MspR9I CCNGG 1 cut(s) 414
MvaI CCWGG 1 cut(s) 414
MwoI GCNNNNNNNGC 2 cut(s) 95, 323
NdeII GATC 2 cut(s) 418, 435
NlaIII CATG 3 cut(s) 371, 394, 464
NlaIV GGNNCC 2 cut(s) 63, 280
NmeAIII GCCGAG 1 cut(s) 100
NmuCI GTSAC 2 cut(s) 7, 451
NspI RCATGY 1 cut(s) 464
PfeI GAWTC 1 cut(s) 22
PkrI GCNGC 1 cut(s) 325
PleI GAGTC 2 cut(s) 238, 394
PpsI GAGTC 2 cut(s) 238, 394
PpuMI RGGWCCY 1 cut(s) 61
Psp5II RGGWCCY 1 cut(s) 61
Psp6I CCWGG 1 cut(s) 412
PspGI CCWGG 1 cut(s) 412
PspN4I GGNNCC 2 cut(s) 63, 280
PspPI GGNCC 3 cut(s) 61, 278, 410
PspPPI RGGWCCY 1 cut(s) 61
RsaI GTAC 3 cut(s) 118, 175, 344
RsaNI GTAC 3 cut(s) 117, 174, 343
RseI CAYNNNNRTG 1 cut(s) 333
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 1 cut(s) 324
Sau3AI GATC 2 cut(s) 418, 435
Sau96I GGNCC 3 cut(s) 61, 278, 410
SchI GAGTC 2 cut(s) 239, 394
ScrFI CCNGG 1 cut(s) 414
SetI ASST 4 cut(s) 63, 145, 160, 415
SinI GGWCC 3 cut(s) 61, 278, 410
SmiMI CAYNNNNRTG 1 cut(s) 333
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 2 cut(s) 45, 79
SsiI CCGC 4 cut(s) 72, 102, 323, 470
SspMI CTAG 1 cut(s) 481
StyD4I CCNGG 1 cut(s) 412
TaaI ACNGT 1 cut(s) 349
TaqI TCGA 1 cut(s) 448
TasI AATT 2 cut(s) 45, 79
TatI WGTACW 1 cut(s) 342
TauI GCSGC 1 cut(s) 326
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TseFI GTSAC 2 cut(s) 7, 451
Tsp45I GTSAC 2 cut(s) 7, 451
TspDTI ATGAA 2 cut(s) 116, 295
VpaK11BI GGWCC 3 cut(s) 61, 278, 410
XapI RAATTY 2 cut(s) 45, 79
XceI RCATGY 1 cut(s) 464
XspI CTAG 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.