Rorug01G0214600

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0014300
Physical Location & Seq
Forward (+)
30521733 .. 30525525
3793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0214600.1

Sequence Viewer

Length: 1005 bp
ATGGGTCGCCGGCAGACCGAGTCCGACCTCGGCCGTTTTGCACTTCTGGCCCTTCTCCTTATAGGTGCAATCTCCTGCTGCATGCTCTACCTGTTCATCTCTATGGTCTTGAAACCCAATAGTGCCACATTTGCTCCAATTTCAGAGCTGGGTGAGAATGGCGGTGAGGTTGTTTTGGCGGGTAAAGAAGAAGGTGAGTGTTGTAGAGGGATCGAGCATTTGGAGCTTTGGGGTGATGCTGTGAAATGGGGGGCTGAGTTTAAGGTCAATTCTTCAAAGGAGTGCTGCATGGCTTGTAAGGATATGTGCGGGGATCCAAATGGGCCGTGTTTGTGTGATTCTTGGGTGTTTTGTGGGGATAGAGAGGCTTGTGGAGACAAGTTTGGTGAGTGTTGGTTAAAAAAACAAAAGGATACATTGGAGCTTGATCGGCGAGACTCAGGGGATCTAGTTATGTGGACTTCTGGACATATATTTGCAAAAGGAGAGGGTATCGTTGGCTTGGAAACAGAATATGGGATTCTTCGTATAAAGCTCTTTGTTGATTGTGCCCCACATTCTGTATTATATATTCTTGAGCTGTTGCGAGAGCATTATTGTGGAGGTTGCCAATTTTATCGTGCAGAAAGCCGTGGAAGCTTTTGGGACTCCATAGGAAATCATGTCCAAAATGCTCCCTTTGGCCCTCCTTTTGGACTTGTACAAGGAACACTTGAAGCCCACGGGATTATATTTAAGGAGATTCCAAGAGAGGGTAAACACAACATCAGAAGGGGATCGGTTGCCTGGGTTGGTTCTGGTCCAGGTTTCTTTATCAGCCTGGCCAACCATTTTGAGTGGAAAAAAGCATACACCGTGTTCGGTTCTGTTCTTCCCGAAGACATGGAAATTGCAGAAAGAATAGCGCAGCTTCCAACCAAGCAAGAGGTTTGGAGTAACATCGATGTCTCTGTCTTGGAGAGACCTGTTTCATTACAGGTTCAAAGAATCAAATCAAACTTATGA

Protein Analysis

334

Amino Acids

37.11

Weight (kDa)

5.49

Isoelectric Point (pI)

41.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 166 - 317 6.2e-12 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014300)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01940
fragaria_vesca FvH4_7g12100 FvH4_7g12100
malus_domestica MD02G1201300.v1.1
prunus_persica Prupe.2G147500_v2.0.a1 Prupe.2G147500_v2.0.a1 Prupe.2G147500_v2.0.a1
pyrus_communis pycom02g16470
rosa_chinensis RchiOBHm_Chr1g0350841
rosa_laevigata RLG00000028450
rosa_multiflora Rmu_sc0006200.1_g000007 Rmu_sc0008251.1_g000002
rosa_roxburghii Rroxscaffold_4G00304470
rosa_rugosa Rorug01G0214600
rosa_samantha Rh1BG199000 Rh1DG226900
rosa_wichuraiana Rw1G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 162, 179, 309
AclWI GGATC 5 cut(s) 218, 308, 321, 453, 784
AcoI YGGCCR 2 cut(s) 31, 822
AfaI GTAC 1 cut(s) 702
AfiI CCNNNNNNNGG 2 cut(s) 692, 752
AgsI TTSAA 4 cut(s) 112, 276, 716, 983
AjnI CCWGG 3 cut(s) 785, 802, 819
AluBI AGCT 7 cut(s) 148, 226, 424, 535, 580, 639, 910
AluI AGCT 7 cut(s) 148, 226, 424, 535, 580, 639, 910
Alw26I GTCTC 4 cut(s) 369, 429, 952, 955
AlwI GGATC 5 cut(s) 218, 308, 321, 453, 784
AoxI GGCC 5 cut(s) 31, 48, 323, 682, 822
ApeKI GCWGC 3 cut(s) 78, 285, 907
AspLEI GCGC 1 cut(s) 907
AspS9I GGNCC 4 cut(s) 49, 323, 683, 800
AsuHPI GGTGA 5 cut(s) 164, 176, 206, 245, 398
AvaII GGWCC 1 cut(s) 800
BaeGI GKGCMC 1 cut(s) 553
BalI TGGCCA 1 cut(s) 824
BamHI GGATCC 1 cut(s) 313
BbsI GAAGAC 1 cut(s) 885
BbvI GCAGC 3 cut(s) 65, 272, 919
BceAI ACGGC 3 cut(s) 18, 310, 615
BciT130I CCWGG 3 cut(s) 787, 804, 821
BciVI GTATCC 1 cut(s) 406
BcoDI GTCTC 4 cut(s) 369, 429, 952, 955
BfaI CTAG 1 cut(s) 449
BfuI GTATCC 1 cut(s) 406
BisI GCNGC 3 cut(s) 79, 286, 908
BlsI GCNGC 3 cut(s) 80, 287, 909
Bme1390I CCNGG 3 cut(s) 787, 804, 821
Bme18I GGWCC 1 cut(s) 800
BmgT120I GGNCC 4 cut(s) 49, 323, 683, 800
BmiI GGNNCC 1 cut(s) 315
BmrFI CCNGG 3 cut(s) 787, 804, 821
BmsI GCATC 1 cut(s) 226
BpiI GAAGAC 1 cut(s) 885
BpuEI CTTGAG 1 cut(s) 596
Bsa29I ATCGAT 1 cut(s) 942
BsaI GGTCTC 1 cut(s) 955
BsaJI CCNNGG 4 cut(s) 28, 631, 721, 786
BsaXI ACNNNNNCTCC 2 cut(s) 118, 148
Bsc4I CCNNNNNNNGG 2 cut(s) 692, 752
Bse118I RCCGGY 1 cut(s) 9
BseBI CCWGG 3 cut(s) 787, 804, 821
BseCI ATCGAT 1 cut(s) 942
BseDI CCNNGG 4 cut(s) 28, 631, 721, 786
BseLI CCNNNNNNNGG 2 cut(s) 692, 752
BseMII CTCAG 2 cut(s) 246, 453
BseSI GKGCMC 1 cut(s) 553
BseX3I CGGCCG 1 cut(s) 31
BseXI GCAGC 3 cut(s) 65, 272, 919
BseYI CCCAGC 1 cut(s) 148
BsgI GTGCAG 1 cut(s) 642
Bsh1285I CGRYCG 1 cut(s) 34
BshFI GGCC 5 cut(s) 33, 50, 325, 684, 824
BshVI ATCGAT 1 cut(s) 942
BsiEI CGRYCG 1 cut(s) 34
BsiSI CCGG 1 cut(s) 10
BslFI GGGAC 1 cut(s) 659
BslI CCNNNNNNNGG 2 cut(s) 692, 752
BsmAI GTCTC 4 cut(s) 369, 429, 952, 955
BsmFI GGGAC 1 cut(s) 659
BsnI GGCC 5 cut(s) 33, 50, 325, 684, 824
Bso31I GGTCTC 1 cut(s) 955
Bsp1286I GDGCHC 1 cut(s) 553
Bsp1407I TGTACA 1 cut(s) 700
Bsp143I GATC 5 cut(s) 210, 313, 427, 445, 776
BspACI CCGC 3 cut(s) 162, 179, 309
BspANI GGCC 5 cut(s) 33, 50, 325, 684, 824
BspCNI CTCAG 2 cut(s) 247, 452
BspDI ATCGAT 1 cut(s) 942
BspLI GGNNCC 1 cut(s) 315
BspPI GGATC 5 cut(s) 218, 308, 321, 453, 784
BspTNI GGTCTC 1 cut(s) 955
BsrFI RCCGGY 1 cut(s) 9
BsrGI TGTACA 1 cut(s) 700
BssAI RCCGGY 1 cut(s) 9
BssECI CCNNGG 4 cut(s) 28, 631, 721, 786
BssMI GATC 5 cut(s) 210, 313, 427, 445, 776
Bst2UI CCWGG 3 cut(s) 787, 804, 821
Bst4CI ACNGT 1 cut(s) 856
BstAUI TGTACA 1 cut(s) 700
BstC8I GCNNGC 2 cut(s) 11, 83
BstDEI CTNAG 2 cut(s) 255, 439
BstDSI CCRYGG 2 cut(s) 631, 721
BstHHI GCGC 1 cut(s) 907
BstKTI GATC 5 cut(s) 213, 316, 430, 448, 779
BstMAI GTCTC 4 cut(s) 369, 429, 952, 955
BstMBI GATC 5 cut(s) 210, 313, 427, 445, 776
BstMCI CGRYCG 1 cut(s) 34
BstMWI GCNNNNNNNGC 5 cut(s) 47, 131, 223, 430, 636
BstNI CCWGG 3 cut(s) 787, 804, 821
BstNSI RCATGY 1 cut(s) 85
BstSCI CCNGG 3 cut(s) 785, 802, 819
BstSLI GKGCMC 1 cut(s) 553
BstV1I GCAGC 3 cut(s) 65, 272, 919
BstV2I GAAGAC 1 cut(s) 885
BstX2I RGATCY 2 cut(s) 313, 445
BstYI RGATCY 2 cut(s) 313, 445
BstZI CGGCCG 1 cut(s) 31
Bsu15I ATCGAT 1 cut(s) 942
BsuI GTATCC 1 cut(s) 406
BsuRI GGCC 5 cut(s) 33, 50, 325, 684, 824
BsuTUI ATCGAT 1 cut(s) 942
BtgI CCRYGG 2 cut(s) 631, 721
Cac8I GCNNGC 2 cut(s) 11, 83
CfoI GCGC 1 cut(s) 907
Cfr10I RCCGGY 1 cut(s) 9
Cfr13I GGNCC 4 cut(s) 49, 323, 683, 800
ClaI ATCGAT 1 cut(s) 942
Csp6I GTAC 1 cut(s) 701
CviAII CATG 4 cut(s) 82, 289, 662, 883
CviQI GTAC 1 cut(s) 701
DdeI CTNAG 2 cut(s) 255, 439
DpnI GATC 5 cut(s) 212, 315, 429, 447, 778
DpnII GATC 5 cut(s) 210, 313, 427, 445, 776
EaeI YGGCCR 2 cut(s) 31, 822
EagI CGGCCG 1 cut(s) 31
EclXI CGGCCG 1 cut(s) 31
Eco31I GGTCTC 1 cut(s) 955
Eco47I GGWCC 1 cut(s) 800
Eco52I CGGCCG 1 cut(s) 31
EcoRII CCWGG 3 cut(s) 785, 802, 819
FaeI CATG 4 cut(s) 85, 292, 665, 886
FalI AAGNNNNNCTT 2 cut(s) 696, 728
FaqI GGGAC 1 cut(s) 659
FatI CATG 4 cut(s) 81, 288, 661, 882
FauI CCCGC 2 cut(s) 172, 302
Fnu4HI GCNGC 3 cut(s) 79, 286, 908
Fsp4HI GCNGC 3 cut(s) 79, 286, 908
FspBI CTAG 1 cut(s) 449
GlaI GCGC 1 cut(s) 906
GluI GCNGC 3 cut(s) 79, 286, 908
GsaI CCCAGC 1 cut(s) 152
HaeIII GGCC 5 cut(s) 33, 50, 325, 684, 824
HapII CCGG 1 cut(s) 10
HhaI GCGC 1 cut(s) 907
Hin1II CATG 4 cut(s) 85, 292, 665, 886
Hin6I GCGC 1 cut(s) 905
HinP1I GCGC 1 cut(s) 905
HindIII AAGCTT 1 cut(s) 637
HinfI GANTC 7 cut(s) 20, 338, 437, 520, 647, 742, 987
HpaII CCGG 1 cut(s) 10
HphI GGTGA 5 cut(s) 164, 176, 206, 245, 398
Hpy166II GTNNAC 2 cut(s) 459, 758
Hpy188I TCNGA 3 cut(s) 25, 145, 770
Hpy188III TCNNGA 4 cut(s) 109, 465, 575, 875
Hpy8I GTNNAC 2 cut(s) 459, 758
HpyAV CCTTC 3 cut(s) 62, 185, 765
HpyCH4III ACNGT 1 cut(s) 856
HpyCH4V TGCA 7 cut(s) 41, 68, 81, 288, 479, 623, 893
HpyF10VI GCNNNNNNNGC 5 cut(s) 47, 131, 223, 430, 636
HpyF3I CTNAG 2 cut(s) 255, 439
Hsp92II CATG 4 cut(s) 85, 292, 665, 886
HspAI GCGC 1 cut(s) 905
KroI GCCGGC 1 cut(s) 9
KroNI GCCGGC 1 cut(s) 11
Kzo9I GATC 5 cut(s) 210, 313, 427, 445, 776
LmnI GCTCC 4 cut(s) 139, 223, 421, 679
Lsp1109I GCAGC 3 cut(s) 65, 272, 919
LweI GCATC 1 cut(s) 226
MaeI CTAG 1 cut(s) 449
MaeIII GTNAC 1 cut(s) 935
MalI GATC 5 cut(s) 212, 315, 429, 447, 778
MboI GATC 5 cut(s) 210, 313, 427, 445, 776
MboII GAAGA 5 cut(s) 200, 264, 515, 863, 890
MflI RGATCY 2 cut(s) 313, 445
MhlI GDGCHC 1 cut(s) 553
MlsI TGGCCA 1 cut(s) 824
MluCI AATT 4 cut(s) 138, 268, 611, 888
MluNI TGGCCA 1 cut(s) 824
MlyI GAGTC 3 cut(s) 29, 431, 641
MmeI TCCRAC 2 cut(s) 48, 938
MnlI CCTC 9 cut(s) 38, 160, 200, 358, 481, 596, 696, 745, 919
Mox20I TGGCCA 1 cut(s) 824
MroNI GCCGGC 1 cut(s) 9
MscI TGGCCA 1 cut(s) 824
MseI TTAA 3 cut(s) 261, 398, 735
MslI CAYNNNNRTG 2 cut(s) 101, 597
Msp20I TGGCCA 1 cut(s) 824
MspI CCGG 1 cut(s) 10
MspR9I CCNGG 3 cut(s) 787, 804, 821
MvaI CCWGG 3 cut(s) 787, 804, 821
MwoI GCNNNNNNNGC 5 cut(s) 47, 131, 223, 430, 636
NaeI GCCGGC 1 cut(s) 11
NdeII GATC 5 cut(s) 210, 313, 427, 445, 776
NgoMIV GCCGGC 1 cut(s) 9
NlaIII CATG 4 cut(s) 85, 292, 665, 886
NlaIV GGNNCC 1 cut(s) 315
NmeAIII GCCGAG 1 cut(s) 9
NspI RCATGY 1 cut(s) 85
PaeI GCATGC 1 cut(s) 85
PdiI GCCGGC 1 cut(s) 11
PfeI GAWTC 4 cut(s) 338, 520, 742, 987
PflFI GACNNNGTC 1 cut(s) 19
PkrI GCNGC 3 cut(s) 80, 287, 909
PleI GAGTC 3 cut(s) 28, 431, 641
PpsI GAGTC 3 cut(s) 28, 431, 641
Psp6I CCWGG 3 cut(s) 785, 802, 819
PspFI CCCAGC 1 cut(s) 148
PspGI CCWGG 3 cut(s) 785, 802, 819
PspN4I GGNNCC 1 cut(s) 315
PspPI GGNCC 4 cut(s) 49, 323, 683, 800
PsuI RGATCY 2 cut(s) 313, 445
PsyI GACNNNGTC 1 cut(s) 19
RsaI GTAC 1 cut(s) 702
RsaNI GTAC 1 cut(s) 701
RseI CAYNNNNRTG 2 cut(s) 101, 597
SaqAI TTAA 3 cut(s) 261, 398, 735
SatI GCNGC 3 cut(s) 79, 286, 908
Sau3AI GATC 5 cut(s) 210, 313, 427, 445, 776
Sau96I GGNCC 4 cut(s) 49, 323, 683, 800
SchI GAGTC 3 cut(s) 29, 431, 641
ScrFI CCNGG 3 cut(s) 787, 804, 821
SduI GDGCHC 1 cut(s) 553
SfaNI GCATC 1 cut(s) 226
SinI GGWCC 1 cut(s) 800
SmiMI CAYNNNNRTG 2 cut(s) 101, 597
SmlI CTYRAG 1 cut(s) 575
SmoI CTYRAG 1 cut(s) 575
SphI GCATGC 1 cut(s) 85
Sse9I AATT 4 cut(s) 138, 268, 611, 888
SsiI CCGC 3 cut(s) 162, 179, 309
SspMI CTAG 1 cut(s) 449
StyD4I CCNGG 3 cut(s) 785, 802, 819
TaaI ACNGT 1 cut(s) 856
TaqI TCGA 2 cut(s) 213, 942
TaqII GACCGA 1 cut(s) 32
TasI AATT 4 cut(s) 138, 268, 611, 888
TatI WGTACW 1 cut(s) 700
TfiI GAWTC 4 cut(s) 338, 520, 742, 987
Tru1I TTAA 3 cut(s) 261, 398, 735
Tru9I TTAA 3 cut(s) 261, 398, 735
TseI GCWGC 3 cut(s) 78, 285, 907
TspDTI ATGAA 2 cut(s) 85, 960
Tth111I GACNNNGTC 1 cut(s) 19
VpaK11BI GGWCC 1 cut(s) 800
XceI RCATGY 1 cut(s) 85
XspI CTAG 1 cut(s) 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.