Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016194

Physical Location & Seq

Genomic Coordinates Reverse (-)

817934 .. 819563

Gene Structure 1630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G03330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGTTGTTCTTTTCTTACTTCAAGGATTTGGTTGGACAAGAAGTGACGGTTGAGCTGAAGAATGATTTAGCCATAAGAGGAACTCTTCACTCAGTTGATCAGTATCTGAATATCAAGCTCGAGAACACTAGGGTTGTTGACCAGGACAAGTACCCTCACATGCTTTCAGTGAGAAACTGTTTCATCAGAGGATCTGTGGTAAGGTACGTGCAGTTACCTAAAGATGGAGTCGATGTTGATTTGCTTCACGACGCAGCTAGAAGAGAAGCTAGGGGTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0000932 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005688 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030532 GO:0032991 GO:0034641 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1902494 GO:1990726 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 ko03040 map03018 map03040

Pfam Domains

Protein Families

LSM

Protein Analysis

93

Amino Acids

10.69

Weight (kDa)

6.82

Isoelectric Point (pI)

10.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSM	PF01423	6 - 71	3.2e-18	LSM domain
SM-ATX	PF14438	7 - 48	1e-05	Ataxin 2 SM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03330
fragaria_vesca	FvH4_3g16480
malus_domestica	MD05G1209800.v1.1 MD10G1196100.v1.1
prunus_persica	Prupe.4G147700_v2.0.a1
pyrus_communis	pycom10g16970
rosa_chinensis	RchiOBHm_Chr5g0027471
rosa_multiflora	Rmu_sc0007802.1_g000025
rosa_roxburghii	Rroxscaffold_1G00052060
rosa_rugosa	Rorug05G0099200
rosa_samantha	Rh5AG193300 Rh5BG191400 Rh5CG211600 Rh5DG192800
rosa_wichuraiana	Rw5G017620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	199
AcuI	CTGAAG	1 cut(s)	77
AfaI	GTAC	2 cut(s)	152, 206
AfiI	CCNNNNNNNGG	1 cut(s)	224
AgsI	TTSAA	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	141
AluBI	AGCT	4 cut(s)	55, 118, 257, 269
AluI	AGCT	4 cut(s)	55, 118, 257, 269
AlwI	GGATC	1 cut(s)	199
AlwNI	CAGNNNCTG	1 cut(s)	106
Ama87I	CYCGRG	1 cut(s)	119
ApeKI	GCWGC	1 cut(s)	254
AvaI	CYCGRG	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	266
BccI	CCATC	1 cut(s)	218
BciT130I	CCWGG	1 cut(s)	143
BclI	TGATCA	1 cut(s)	97
BfaI	CTAG	3 cut(s)	129, 258, 270
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
Bme1390I	CCNGG	1 cut(s)	143
BmeT110I	CYCGRG	1 cut(s)	119
BmrFI	CCNGG	1 cut(s)	143
BsaAI	YACGTR	1 cut(s)	208
BsaBI	GATNNNNATC	1 cut(s)	102
BsaXI	ACNNNNNCTCC	2 cut(s)	219, 249
Bsc4I	CCNNNNNNNGG	1 cut(s)	224
Bse8I	GATNNNNATC	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	143
BseJI	GATNNNNATC	1 cut(s)	102
BseLI	CCNNNNNNNGG	1 cut(s)	224
BseMII	CTCAG	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	266
BsgI	GTGCAG	1 cut(s)	230
BsiHKCI	CYCGRG	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	224
BsoBI	CYCGRG	1 cut(s)	119
Bsp143I	GATC	2 cut(s)	97, 191
BspCNI	CTCAG	1 cut(s)	104
BspPI	GGATC	1 cut(s)	199
BssMI	GATC	2 cut(s)	97, 191
Bst2UI	CCWGG	1 cut(s)	143
Bst4CI	ACNGT	2 cut(s)	49, 179
Bst6I	CTCTTC	2 cut(s)	90, 256
BstBAI	YACGTR	1 cut(s)	208
BstDEI	CTNAG	1 cut(s)	91
BstKTI	GATC	2 cut(s)	100, 194
BstMBI	GATC	2 cut(s)	97, 191
BstNI	CCWGG	1 cut(s)	143
BstNSI	RCATGY	1 cut(s)	163
BstSCI	CCNGG	1 cut(s)	141
BstV1I	GCAGC	1 cut(s)	266
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
BtsIMutI	CAGTG	1 cut(s)	174
CaiI	CAGNNNCTG	1 cut(s)	106
CseI	GACGC	1 cut(s)	260
Csp6I	GTAC	2 cut(s)	151, 205
CviAII	CATG	1 cut(s)	160
CviJI	RGCY	6 cut(s)	55, 71, 118, 257, 269, 279
CviKI_1	RGCY	6 cut(s)	55, 71, 118, 257, 269, 279
CviQI	GTAC	2 cut(s)	151, 205
DdeI	CTNAG	1 cut(s)	91
DpnI	GATC	2 cut(s)	99, 193
DpnII	GATC	2 cut(s)	97, 191
Eam1104I	CTCTTC	2 cut(s)	90, 256
EarI	CTCTTC	2 cut(s)	90, 256
Eco57I	CTGAAG	1 cut(s)	77
Eco88I	CYCGRG	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	141
FaeI	CATG	1 cut(s)	163
FaiI	YATR	2 cut(s)	74, 161
FatI	CATG	1 cut(s)	159
FbaI	TGATCA	1 cut(s)	97
Fnu4HI	GCNGC	1 cut(s)	255
Fsp4HI	GCNGC	1 cut(s)	255
FspBI	CTAG	3 cut(s)	129, 258, 270
GluI	GCNGC	1 cut(s)	255
HgaI	GACGC	1 cut(s)	260
Hin1II	CATG	1 cut(s)	163
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HinfI	GANTC	1 cut(s)	228
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	2 cut(s)	108, 188
Hpy188III	TCNNGA	2 cut(s)	121, 248
Hpy8I	GTNNAC	1 cut(s)	139
Hpy99I	CGWCG	1 cut(s)	254
HpyCH4III	ACNGT	2 cut(s)	49, 179
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	1 cut(s)	211
HpyF3I	CTNAG	1 cut(s)	91
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	1 cut(s)	163
Ksp22I	TGATCA	1 cut(s)	97
Kzo9I	GATC	2 cut(s)	97, 191
LpnPI	CCDG	2 cut(s)	128, 155
Lsp1109I	GCAGC	1 cut(s)	266
MaeI	CTAG	3 cut(s)	129, 258, 270
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	2 cut(s)	43, 213
MalI	GATC	2 cut(s)	99, 193
MboI	GATC	2 cut(s)	97, 191
MboII	GAAGA	3 cut(s)	70, 77, 273
MflI	RGATCY	1 cut(s)	191
MlyI	GAGTC	1 cut(s)	237
MmeI	TCCRAC	1 cut(s)	13
MnlI	CCTC	3 cut(s)	71, 165, 182
MspR9I	CCNGG	1 cut(s)	143
MvaI	CCWGG	1 cut(s)	143
NdeII	GATC	2 cut(s)	97, 191
NlaIII	CATG	1 cut(s)	163
NmuCI	GTSAC	1 cut(s)	43
NspI	RCATGY	1 cut(s)	163
PaeR7I	CTCGAG	1 cut(s)	119
PkrI	GCNGC	1 cut(s)	256
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
Ppu21I	YACGTR	1 cut(s)	208
Psp6I	CCWGG	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	141
PstNI	CAGNNNCTG	1 cut(s)	106
PsuI	RGATCY	1 cut(s)	191
RsaI	GTAC	2 cut(s)	152, 206
RsaNI	GTAC	2 cut(s)	151, 205
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	2 cut(s)	97, 191
SchI	GAGTC	1 cut(s)	237
ScrFI	CCNGG	1 cut(s)	143
SetI	ASST	7 cut(s)	57, 120, 206, 210, 220, 259, 271
Sfr274I	CTCGAG	1 cut(s)	119
SlaI	CTCGAG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
SspMI	CTAG	3 cut(s)	129, 258, 270
StyD4I	CCNGG	1 cut(s)	141
TaaI	ACNGT	2 cut(s)	49, 179
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	2 cut(s)	120, 231
TscAI	CASTG	1 cut(s)	174
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	1 cut(s)	172
TspRI	CASTG	1 cut(s)	174
XceI	RCATGY	1 cut(s)	163
XhoI	CTCGAG	1 cut(s)	119
XspI	CTAG	3 cut(s)	129, 258, 270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.