Component of LSM protein complexes, which are involved in RNA processing
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G03330 |
| fragaria_vesca | FvH4_3g16480 |
| malus_domestica | MD05G1209800.v1.1 MD10G1196100.v1.1 |
| prunus_persica | Prupe.4G147700_v2.0.a1 |
| pyrus_communis | pycom10g16970 |
| rosa_chinensis | RchiOBHm_Chr5g0027471 |
| rosa_multiflora | Rmu_sc0007802.1_g000025 |
| rosa_roxburghii | Rroxscaffold_1G00052060 |
| rosa_rugosa | Rorug05G0099200 |
| rosa_samantha | Rh5AG193300 Rh5BG191400 Rh5CG211600 Rh5DG192800 |
| rosa_wichuraiana | Rw5G017620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 138 |
| AciI | CCGC | 1 cut(s) | 155 |
| AclWI | GGATC | 2 cut(s) | 105, 199 |
| AcuI | CTGAAG | 1 cut(s) | 77 |
| AdeI | CACNNNGTG | 1 cut(s) | 94 |
| AfaI | GTAC | 2 cut(s) | 104, 152 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 224, 261 |
| AflIII | ACRYGT | 1 cut(s) | 159 |
| AgsI | TTSAA | 2 cut(s) | 22, 239 |
| AluBI | AGCT | 3 cut(s) | 55, 118, 269 |
| AluI | AGCT | 3 cut(s) | 55, 118, 269 |
| AlwI | GGATC | 2 cut(s) | 105, 199 |
| ApeKI | GCWGC | 1 cut(s) | 244 |
| BauI | CACGAG | 1 cut(s) | 270 |
| BbvI | GCAGC | 1 cut(s) | 231 |
| BfaI | CTAG | 1 cut(s) | 119 |
| BisI | GCNGC | 1 cut(s) | 245 |
| BlsI | GCNGC | 1 cut(s) | 246 |
| BmsI | GCATC | 1 cut(s) | 241 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 219, 249 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 224, 261 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 224, 261 |
| BseMII | CTCAG | 1 cut(s) | 105 |
| BseXI | GCAGC | 1 cut(s) | 231 |
| BsgI | GTGCAG | 1 cut(s) | 71 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 224, 261 |
| Bsp143I | GATC | 3 cut(s) | 64, 97, 191 |
| BspACI | CCGC | 1 cut(s) | 155 |
| BspCNI | CTCAG | 1 cut(s) | 104 |
| BspPI | GGATC | 2 cut(s) | 105, 199 |
| BssMI | GATC | 3 cut(s) | 64, 97, 191 |
| BssSI | CACGAG | 1 cut(s) | 270 |
| Bst2BI | CACGAG | 1 cut(s) | 270 |
| Bst4CI | ACNGT | 2 cut(s) | 49, 179 |
| BstDEI | CTNAG | 1 cut(s) | 91 |
| BstKTI | GATC | 3 cut(s) | 67, 100, 194 |
| BstMBI | GATC | 3 cut(s) | 64, 97, 191 |
| BstNSI | RCATGY | 1 cut(s) | 163 |
| BstV1I | GCAGC | 1 cut(s) | 231 |
| BtsI | GCAGTG | 1 cut(s) | 83 |
| BtsIMutI | CAGTG | 4 cut(s) | 54, 83, 99, 174 |
| Csp6I | GTAC | 2 cut(s) | 103, 151 |
| CviAII | CATG | 2 cut(s) | 160, 248 |
| CviJI | RGCY | 4 cut(s) | 55, 118, 269, 279 |
| CviKI_1 | RGCY | 4 cut(s) | 55, 118, 269, 279 |
| CviQI | GTAC | 2 cut(s) | 103, 151 |
| DdeI | CTNAG | 1 cut(s) | 91 |
| DpnI | GATC | 3 cut(s) | 66, 99, 193 |
| DpnII | GATC | 3 cut(s) | 64, 97, 191 |
| DraIII | CACNNNGTG | 1 cut(s) | 94 |
| Eco57I | CTGAAG | 1 cut(s) | 77 |
| FaeI | CATG | 2 cut(s) | 163, 251 |
| FaiI | YATR | 4 cut(s) | 113, 161, 207, 249 |
| FatI | CATG | 2 cut(s) | 159, 247 |
| FauI | CCCGC | 1 cut(s) | 162 |
| FblI | GTMKAC | 1 cut(s) | 138 |
| Fnu4HI | GCNGC | 1 cut(s) | 245 |
| Fsp4HI | GCNGC | 1 cut(s) | 245 |
| FspBI | CTAG | 1 cut(s) | 119 |
| GluI | GCNGC | 1 cut(s) | 245 |
| Hin1II | CATG | 2 cut(s) | 163, 251 |
| HincII | GTYRAC | 1 cut(s) | 139 |
| HindII | GTYRAC | 1 cut(s) | 139 |
| Hpy166II | GTNNAC | 2 cut(s) | 139, 232 |
| Hpy188I | TCNGA | 1 cut(s) | 77 |
| Hpy188III | TCNNGA | 1 cut(s) | 199 |
| Hpy8I | GTNNAC | 2 cut(s) | 139, 232 |
| Hpy99I | CGWCG | 1 cut(s) | 140 |
| HpyAV | CCTTC | 1 cut(s) | 255 |
| HpyCH4III | ACNGT | 2 cut(s) | 49, 179 |
| HpyCH4IV | ACGT | 1 cut(s) | 234 |
| HpyCH4V | TGCA | 4 cut(s) | 71, 88, 211, 247 |
| HpyF3I | CTNAG | 1 cut(s) | 91 |
| HpySE526I | ACGT | 1 cut(s) | 234 |
| Hsp92II | CATG | 2 cut(s) | 163, 251 |
| Kzo9I | GATC | 3 cut(s) | 64, 97, 191 |
| LmnI | GCTCC | 1 cut(s) | 52 |
| LpnPI | CCDG | 2 cut(s) | 234, 271 |
| Lsp1109I | GCAGC | 1 cut(s) | 231 |
| LweI | GCATC | 1 cut(s) | 241 |
| MaeI | CTAG | 1 cut(s) | 119 |
| MaeII | ACGT | 1 cut(s) | 234 |
| MaeIII | GTNAC | 1 cut(s) | 43 |
| MalI | GATC | 3 cut(s) | 66, 99, 193 |
| MboI | GATC | 3 cut(s) | 64, 97, 191 |
| MboII | GAAGA | 1 cut(s) | 70 |
| MnlI | CCTC | 4 cut(s) | 71, 116, 165, 217 |
| NdeII | GATC | 3 cut(s) | 64, 97, 191 |
| NlaIII | CATG | 2 cut(s) | 163, 251 |
| NmuCI | GTSAC | 1 cut(s) | 43 |
| NspI | RCATGY | 1 cut(s) | 163 |
| PciI | ACATGT | 1 cut(s) | 159 |
| PkrI | GCNGC | 1 cut(s) | 246 |
| PscI | ACATGT | 1 cut(s) | 159 |
| RsaI | GTAC | 2 cut(s) | 104, 152 |
| RsaNI | GTAC | 2 cut(s) | 103, 151 |
| SalI | GTCGAC | 1 cut(s) | 137 |
| SatI | GCNGC | 1 cut(s) | 245 |
| Sau3AI | GATC | 3 cut(s) | 64, 97, 191 |
| SetI | ASST | 5 cut(s) | 57, 108, 120, 237, 271 |
| SfaNI | GCATC | 1 cut(s) | 241 |
| SsiI | CCGC | 1 cut(s) | 155 |
| SspMI | CTAG | 1 cut(s) | 119 |
| TaaI | ACNGT | 2 cut(s) | 49, 179 |
| TaiI | ACGT | 1 cut(s) | 237 |
| TaqI | TCGA | 1 cut(s) | 138 |
| TscAI | CASTG | 4 cut(s) | 54, 90, 99, 174 |
| TseFI | GTSAC | 1 cut(s) | 43 |
| TseI | GCWGC | 1 cut(s) | 244 |
| Tsp45I | GTSAC | 1 cut(s) | 43 |
| TspRI | CASTG | 4 cut(s) | 54, 90, 99, 174 |
| XceI | RCATGY | 1 cut(s) | 163 |
| XmiI | GTMKAC | 1 cut(s) | 138 |
| XspI | CTAG | 1 cut(s) | 119 |