MD10G1196100.v1.1

Component of LSM protein complexes, which are involved in RNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0016194
Physical Location & Seq
Forward (+)
29427097 .. 29429462
2366 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1196100.v1.1.491

Sequence Viewer

Length: 282 bp
ATGTTGTTCTTCTCGTATTTCAAGGAGTTGGTGGGGAGAGAAGTGACGGTGGAGCTGAAGAATGACCTTGCAATCAGAGGAACACTGCACTCGGTGGATCAATATCTCAACATTAAGCTCGAGAATACTAGGGTTGTCGACCAGGACAAGTACCCTCACATGATGTCAGTGAGGAACTGTTTTATTAGGGGATCAGTTGTGAGATACGTTCAACTACCCCCAGAGGGAGTCGATGTTGAACTGCTGCATGATGCCACCAGAAGGGAAGCTCGTGGCGGCTGA

Protein Analysis

94

Amino Acids

10.78

Weight (kDa)

6.83

Isoelectric Point (pI)

18.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 6 - 71 3.7e-18 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03330
fragaria_vesca FvH4_3g16480
malus_domestica MD05G1209800.v1.1 MD10G1196100.v1.1
prunus_persica Prupe.4G147700_v2.0.a1
pyrus_communis pycom10g16970
rosa_chinensis RchiOBHm_Chr5g0027471
rosa_multiflora Rmu_sc0007802.1_g000025
rosa_roxburghii Rroxscaffold_1G00052060
rosa_rugosa Rorug05G0099200
rosa_samantha Rh5AG193300 Rh5BG191400 Rh5CG211600 Rh5DG192800
rosa_wichuraiana Rw5G017620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 138
AciI CCGC 1 cut(s) 276
AclWI GGATC 2 cut(s) 105, 199
AcuI CTGAAG 1 cut(s) 77
AdeI CACNNNGTG 1 cut(s) 94
AfaI GTAC 1 cut(s) 152
AfiI CCNNNNNNNGG 2 cut(s) 224, 261
AgsI TTSAA 3 cut(s) 22, 212, 239
AjnI CCWGG 1 cut(s) 141
AluBI AGCT 3 cut(s) 55, 118, 269
AluI AGCT 3 cut(s) 55, 118, 269
AlwI GGATC 2 cut(s) 105, 199
Ama87I CYCGRG 1 cut(s) 119
ApeKI GCWGC 1 cut(s) 244
AvaI CYCGRG 1 cut(s) 119
BauI CACGAG 1 cut(s) 270
BbvI GCAGC 1 cut(s) 231
BciT130I CCWGG 1 cut(s) 143
BfaI CTAG 1 cut(s) 129
BisI GCNGC 2 cut(s) 245, 277
BlsI GCNGC 2 cut(s) 246, 278
Bme1390I CCNGG 1 cut(s) 143
BmeT110I CYCGRG 1 cut(s) 119
BmrFI CCNGG 1 cut(s) 143
BmsI GCATC 1 cut(s) 241
BsaBI GATNNNNATC 1 cut(s) 102
BsaXI ACNNNNNCTCC 2 cut(s) 219, 249
Bsc4I CCNNNNNNNGG 2 cut(s) 224, 261
Bse8I GATNNNNATC 1 cut(s) 102
BseBI CCWGG 1 cut(s) 143
BseJI GATNNNNATC 1 cut(s) 102
BseLI CCNNNNNNNGG 2 cut(s) 224, 261
BseXI GCAGC 1 cut(s) 231
BsgI GTGCAG 1 cut(s) 71
BsiHKCI CYCGRG 1 cut(s) 119
BslI CCNNNNNNNGG 2 cut(s) 224, 261
BsoBI CYCGRG 1 cut(s) 119
Bsp143I GATC 2 cut(s) 97, 191
BspACI CCGC 1 cut(s) 276
BspPI GGATC 2 cut(s) 105, 199
BssMI GATC 2 cut(s) 97, 191
BssSI CACGAG 1 cut(s) 270
Bst2BI CACGAG 1 cut(s) 270
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 2 cut(s) 49, 179
BstKTI GATC 2 cut(s) 100, 194
BstMBI GATC 2 cut(s) 97, 191
BstNI CCWGG 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 141
BstV1I GCAGC 1 cut(s) 231
BtsI GCAGTG 1 cut(s) 83
BtsIMutI CAGTG 2 cut(s) 83, 174
Csp6I GTAC 1 cut(s) 151
CviAII CATG 2 cut(s) 160, 248
CviJI RGCY 4 cut(s) 55, 118, 269, 279
CviKI_1 RGCY 4 cut(s) 55, 118, 269, 279
CviQI GTAC 1 cut(s) 151
DpnI GATC 2 cut(s) 99, 193
DpnII GATC 2 cut(s) 97, 191
DraIII CACNNNGTG 1 cut(s) 94
Eco57I CTGAAG 1 cut(s) 77
Eco88I CYCGRG 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 141
FaeI CATG 2 cut(s) 163, 251
FaiI YATR 2 cut(s) 161, 249
FatI CATG 2 cut(s) 159, 247
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 2 cut(s) 245, 277
Fsp4HI GCNGC 2 cut(s) 245, 277
FspBI CTAG 1 cut(s) 129
GluI GCNGC 2 cut(s) 245, 277
Hin1II CATG 2 cut(s) 163, 251
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HinfI GANTC 1 cut(s) 228
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 1 cut(s) 77
Hpy188III TCNNGA 1 cut(s) 121
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 1 cut(s) 255
HpyCH4III ACNGT 2 cut(s) 49, 179
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 3 cut(s) 71, 88, 247
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 2 cut(s) 163, 251
Kzo9I GATC 2 cut(s) 97, 191
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 4 cut(s) 128, 155, 234, 271
Lsp1109I GCAGC 1 cut(s) 231
LweI GCATC 1 cut(s) 241
MaeI CTAG 1 cut(s) 129
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 1 cut(s) 43
MalI GATC 2 cut(s) 99, 193
MboI GATC 2 cut(s) 97, 191
MboII GAAGA 1 cut(s) 70
MlyI GAGTC 1 cut(s) 237
MnlI CCTC 4 cut(s) 71, 165, 165, 217
MseI TTAA 1 cut(s) 114
MspR9I CCNGG 1 cut(s) 143
MvaI CCWGG 1 cut(s) 143
NdeII GATC 2 cut(s) 97, 191
NlaIII CATG 2 cut(s) 163, 251
NmuCI GTSAC 1 cut(s) 43
PaeR7I CTCGAG 1 cut(s) 119
PkrI GCNGC 2 cut(s) 246, 278
PleI GAGTC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 236
Psp6I CCWGG 1 cut(s) 141
PspGI CCWGG 1 cut(s) 141
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
SalI GTCGAC 1 cut(s) 137
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 2 cut(s) 245, 277
Sau3AI GATC 2 cut(s) 97, 191
SchI GAGTC 1 cut(s) 237
ScrFI CCNGG 1 cut(s) 143
SetI ASST 5 cut(s) 57, 69, 120, 210, 271
SfaNI GCATC 1 cut(s) 241
Sfr274I CTCGAG 1 cut(s) 119
SlaI CTCGAG 1 cut(s) 119
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
SsiI CCGC 1 cut(s) 276
SspMI CTAG 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 141
TaaI ACNGT 2 cut(s) 49, 179
TaiI ACGT 1 cut(s) 210
TaqI TCGA 3 cut(s) 120, 138, 231
TauI GCSGC 1 cut(s) 279
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TscAI CASTG 2 cut(s) 90, 174
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 1 cut(s) 244
Tsp45I GTSAC 1 cut(s) 43
TspRI CASTG 2 cut(s) 90, 174
XhoI CTCGAG 1 cut(s) 119
XmiI GTMKAC 1 cut(s) 138
XspI CTAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.