Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0016194

Physical Location & Seq

Genomic Coordinates Forward (+)

8739333 .. 8741040

Gene Structure 1708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0099200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGGAGATAGGCGACCCCTGCACTTCAATTTCTTCTCTTCCCTCAAGCAGGTTGAGAAGAGATTGAAACTAGAACACCCATCTGAACAATCTACTGTATTACCATCTCCATTGTTGGAAAGCAACAAGATATTAACAGAATCACTAAGCTCACCCGTATACCTTGATTTGGATCCCTCCAACAACAACAACCATTACAGTTCTAGTACGCTCCAAGACAGTAGTGAAGCCCCTGAAGCATTCCTCTCATGCTCTCCACAGTTTATACCAACCCAAGAGAACCCAACTCAGCCAAATGCCCTGCATGACCCCAAAACTATCAATGACACTGAAGGTGAAGCCATCGTCGATGATATTGAACAGTTGATTCAACTCTTGGGTTTGTCAAGTTGCCAGGAAGGAGATGAAGAAAAGGCTGGTTTGGAGTTGAAGTGTGGAGGTAGTGAAAATGGGGGTAATTCTTGTCATTGTGAAGGCGGGTTTTATGAGAAGATTGTTGAGGTGAAGGGGCCAAAGTGTGGGAGAGAAGTGGAGAGGTTGGAGGGTTGGATTAAGTACTTTTTGAATGGTGATGGGAAGGGAAAGATTGAGCCTTTCAGGCTGGCACATTTGCTTTTGAGTAAAGCTGCTTTTGTTTCTGAGGGTGCTGATCATGGTTTTGGAGACTTGGACTTCCCTTCAACAATTGGGGATTTTCTGCGCAACGATCCTCCAACAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0000932 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005688 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030532 GO:0032991 GO:0034641 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1902494 GO:1990726 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 ko03040 map03018 map03040

Pfam Domains

Protein Families

LSM

Protein Analysis

240

Amino Acids

26.38

Weight (kDa)

4.68

Isoelectric Point (pI)

55.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03330
fragaria_vesca	FvH4_3g16480
malus_domestica	MD05G1209800.v1.1 MD10G1196100.v1.1
prunus_persica	Prupe.4G147700_v2.0.a1
pyrus_communis	pycom10g16970
rosa_chinensis	RchiOBHm_Chr5g0027471
rosa_multiflora	Rmu_sc0007802.1_g000025
rosa_roxburghii	Rroxscaffold_1G00052060
rosa_rugosa	Rorug05G0099200
rosa_samantha	Rh5AG193300 Rh5BG191400 Rh5CG211600 Rh5DG192800
rosa_wichuraiana	Rw5G017620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	701
Acc36I	ACCTGC	1 cut(s)	40
AccB7I	CCANNNNNTGG	1 cut(s)	518
AccI	GTMKAC	1 cut(s)	159
AciI	CCGC	1 cut(s)	477
AclWI	GGATC	3 cut(s)	167, 180, 701
AcuI	CTGAAG	2 cut(s)	255, 351
AfaI	GTAC	2 cut(s)	208, 557
AfiI	CCNNNNNNNGG	3 cut(s)	49, 169, 518
AgsI	TTSAA	7 cut(s)	28, 67, 359, 371, 430, 565, 681
AjnI	CCWGG	1 cut(s)	393
AluBI	AGCT	2 cut(s)	150, 626
AluI	AGCT	2 cut(s)	150, 626
Alw26I	GTCTC	1 cut(s)	657
AlwI	GGATC	3 cut(s)	167, 180, 701
AoxI	GGCC	1 cut(s)	509
ApeKI	GCWGC	1 cut(s)	626
AspLEI	GCGC	1 cut(s)	702
AspS9I	GGNCC	1 cut(s)	509
AsuHPI	GGTGA	4 cut(s)	144, 347, 514, 581
BamHI	GGATCC	1 cut(s)	172
BbvI	GCAGC	1 cut(s)	613
BccI	CCATC	4 cut(s)	88, 112, 350, 566
BciT130I	CCWGG	1 cut(s)	395
BclI	TGATCA	1 cut(s)	649
BcoDI	GTCTC	1 cut(s)	657
BfaI	CTAG	2 cut(s)	71, 204
BfuAI	ACCTGC	1 cut(s)	40
BglI	GCCNNNNNGGC	1 cut(s)	598
BisI	GCNGC	1 cut(s)	627
BlsI	GCNGC	1 cut(s)	628
BmcAI	AGTACT	1 cut(s)	557
Bme1390I	CCNGG	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	509
BmiI	GGNNCC	2 cut(s)	174, 510
BmrFI	CCNGG	1 cut(s)	395
BpuEI	CTTGAG	1 cut(s)	29
BsaBI	GATNNNNATC	1 cut(s)	171
BsaXI	ACNNNNNCTCC	2 cut(s)	416, 446
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 169, 518
Bse8I	GATNNNNATC	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	395
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	3 cut(s)	49, 169, 518
BseMII	CTCAG	2 cut(s)	302, 630
BseXI	GCAGC	1 cut(s)	613
BsgI	GTGCAG	1 cut(s)	5
BshFI	GGCC	1 cut(s)	511
BslI	CCNNNNNNNGG	3 cut(s)	49, 169, 518
BsmAI	GTCTC	1 cut(s)	657
BsmI	GAATGC	1 cut(s)	239
BsnI	GGCC	1 cut(s)	511
Bsp143I	GATC	3 cut(s)	172, 649, 706
BspACI	CCGC	1 cut(s)	477
BspANI	GGCC	1 cut(s)	511
BspCNI	CTCAG	2 cut(s)	301, 631
BspLI	GGNNCC	2 cut(s)	174, 510
BspMI	ACCTGC	1 cut(s)	40
BspPI	GGATC	3 cut(s)	167, 180, 701
BssMI	GATC	3 cut(s)	172, 649, 706
BssNAI	GTATAC	1 cut(s)	160
Bst1107I	GTATAC	1 cut(s)	160
Bst2UI	CCWGG	1 cut(s)	395
Bst4CI	ACNGT	5 cut(s)	97, 200, 221, 261, 363
Bst6I	CTCTTC	2 cut(s)	43, 53
BstC8I	GCNNGC	1 cut(s)	603
BstDEI	CTNAG	3 cut(s)	146, 288, 639
BstENI	CCTNNNNNAGG	1 cut(s)	47
BstHHI	GCGC	1 cut(s)	702
BstKTI	GATC	3 cut(s)	175, 652, 709
BstMAI	GTCTC	1 cut(s)	657
BstMBI	GATC	3 cut(s)	172, 649, 706
BstMWI	GCNNNNNNNGC	3 cut(s)	19, 236, 598
BstNI	CCWGG	1 cut(s)	395
BstSCI	CCNGG	1 cut(s)	393
BstV1I	GCAGC	1 cut(s)	613
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
BstZ17I	GTATAC	1 cut(s)	160
BsuRI	GGCC	1 cut(s)	511
BtsIMutI	CAGTG	1 cut(s)	327
BveI	ACCTGC	1 cut(s)	40
Cac8I	GCNNGC	1 cut(s)	603
CfoI	GCGC	1 cut(s)	702
Cfr13I	GGNCC	1 cut(s)	509
Csp6I	GTAC	2 cut(s)	207, 556
CviAII	CATG	3 cut(s)	249, 305, 653
CviJI	RGCY	9 cut(s)	150, 230, 292, 341, 416, 511, 592, 601, 626
CviKI_1	RGCY	9 cut(s)	150, 230, 292, 341, 416, 511, 592, 601, 626
CviQI	GTAC	2 cut(s)	207, 556
DdeI	CTNAG	3 cut(s)	146, 288, 639
DpnI	GATC	3 cut(s)	174, 651, 708
DpnII	GATC	3 cut(s)	172, 649, 706
Eam1104I	CTCTTC	2 cut(s)	43, 53
EarI	CTCTTC	2 cut(s)	43, 53
Eco57I	CTGAAG	2 cut(s)	255, 351
EcoNI	CCTNNNNNAGG	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	393
FaeI	CATG	3 cut(s)	252, 308, 656
FaiI	YATR	6 cut(s)	160, 250, 266, 306, 486, 654
FatI	CATG	3 cut(s)	248, 304, 652
FauI	CCCGC	1 cut(s)	470
FbaI	TGATCA	1 cut(s)	649
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	1 cut(s)	627
Fsp4HI	GCNGC	1 cut(s)	627
FspBI	CTAG	2 cut(s)	71, 204
FspI	TGCGCA	1 cut(s)	701
GlaI	GCGC	1 cut(s)	701
GluI	GCNGC	1 cut(s)	627
HaeIII	GGCC	1 cut(s)	511
HhaI	GCGC	1 cut(s)	702
Hin1II	CATG	3 cut(s)	252, 308, 656
Hin6I	GCGC	1 cut(s)	700
HinP1I	GCGC	1 cut(s)	700
HinfI	GANTC	2 cut(s)	140, 367
HphI	GGTGA	4 cut(s)	144, 347, 514, 581
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	2 cut(s)	85, 640
Hpy8I	GTNNAC	1 cut(s)	160
Hpy99I	CGWCG	1 cut(s)	350
HpyAV	CCTTC	6 cut(s)	326, 392, 467, 499, 571, 687
HpyCH4III	ACNGT	5 cut(s)	97, 200, 221, 261, 363
HpyCH4V	TGCA	2 cut(s)	22, 304
HpyF10VI	GCNNNNNNNGC	3 cut(s)	19, 236, 598
HpyF3I	CTNAG	3 cut(s)	146, 288, 639
Hsp92II	CATG	3 cut(s)	252, 308, 656
HspAI	GCGC	1 cut(s)	700
Ksp22I	TGATCA	1 cut(s)	649
Kzo9I	GATC	3 cut(s)	172, 649, 706
LmnI	GCTCC	1 cut(s)	216
LpnPI	CCDG	9 cut(s)	32, 35, 246, 314, 380, 402, 407, 583, 587
Lsp1109I	GCAGC	1 cut(s)	613
MaeI	CTAG	2 cut(s)	71, 204
MalI	GATC	3 cut(s)	174, 651, 708
MboI	GATC	3 cut(s)	172, 649, 706
MboII	GAAGA	5 cut(s)	25, 30, 70, 419, 502
MfeI	CAATTG	1 cut(s)	684
MflI	RGATCY	1 cut(s)	172
MluCI	AATT	3 cut(s)	28, 457, 684
MmeI	TCCRAC	4 cut(s)	96, 204, 519, 527
MnlI	CCTC	9 cut(s)	53, 187, 254, 431, 493, 528, 535, 634, 720
MseI	TTAA	3 cut(s)	134, 552, 721
MspR9I	CCNGG	1 cut(s)	395
MunI	CAATTG	1 cut(s)	684
Mva1269I	GAATGC	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	395
MwoI	GCNNNNNNNGC	3 cut(s)	19, 236, 598
NdeII	GATC	3 cut(s)	172, 649, 706
NlaIII	CATG	3 cut(s)	252, 308, 656
NlaIV	GGNNCC	2 cut(s)	174, 510
NsbI	TGCGCA	1 cut(s)	701
PctI	GAATGC	1 cut(s)	239
PfeI	GAWTC	2 cut(s)	140, 367
PflMI	CCANNNNNTGG	1 cut(s)	518
PkrI	GCNGC	1 cut(s)	628
Psp6I	CCWGG	1 cut(s)	393
PspGI	CCWGG	1 cut(s)	393
PspN4I	GGNNCC	2 cut(s)	174, 510
PspPI	GGNCC	1 cut(s)	509
PsuI	RGATCY	1 cut(s)	172
RsaI	GTAC	2 cut(s)	208, 557
RsaNI	GTAC	2 cut(s)	207, 556
SaqAI	TTAA	3 cut(s)	134, 552, 721
SatI	GCNGC	1 cut(s)	627
Sau3AI	GATC	3 cut(s)	172, 649, 706
Sau96I	GGNCC	1 cut(s)	509
ScaI	AGTACT	1 cut(s)	557
ScrFI	CCNGG	1 cut(s)	395
SetI	ASST	8 cut(s)	54, 152, 165, 337, 442, 504, 539, 628
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	3 cut(s)	28, 457, 684
SsiI	CCGC	1 cut(s)	477
SspMI	CTAG	2 cut(s)	71, 204
StyD4I	CCNGG	1 cut(s)	393
TaaI	ACNGT	5 cut(s)	97, 200, 221, 261, 363
TaqI	TCGA	1 cut(s)	348
TasI	AATT	3 cut(s)	28, 457, 684
TatI	WGTACW	1 cut(s)	555
TfiI	GAWTC	2 cut(s)	140, 367
Tru1I	TTAA	3 cut(s)	134, 552, 721
Tru9I	TTAA	3 cut(s)	134, 552, 721
TscAI	CASTG	1 cut(s)	334
TseI	GCWGC	1 cut(s)	626
TspDTI	ATGAA	1 cut(s)	420
TspRI	CASTG	1 cut(s)	334
Van91I	CCANNNNNTGG	1 cut(s)	518
XagI	CCTNNNNNAGG	1 cut(s)	47
XmiI	GTMKAC	1 cut(s)	159
XspI	CTAG	2 cut(s)	71, 204
ZrmI	AGTACT	1 cut(s)	557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.