Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0020191

Physical Location & Seq

Genomic Coordinates Forward (+)

871874 .. 872906

Gene Structure 1033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G03490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGAAGATTCTTCCGGTTGGATCACGGTTTTGTCCGACGGATCTAGGGTTGGTGAGGCTTTATCTTCGAAACAAGGTGGAGAGAAATCAGAGCAGTTTCATAACAACTATGGACATCCACCAAGACTACCCTTGGCTTCTTCCTCACGTAAACAATCCTTTGTTCAATAACAACGAGTGGTACTACTTTGTTCCGCTTACTGAACGAGGTGGCAAGATATTAAGCGTACACCGGAAGGTAGCCGCAAGAGGAGGAAGCGAAGGCGGCACTTGGAGAAGCAACGATGGGAAAAAAGAGATCAAGGACGGACACATGCAAAAGGGTGATGGGTTACGAGCAAGTGATGACCTCCAAAAGGTTGTCTTGTGTCGGATCCGATACAAGAAAGAGGCGAACGTCAACGAGTTTGGACTCGTTAACCATCAGGCTCATCAGACTCAGGATGCTTTAACCGGTTTTGCTGATCAGCTTGAGATGATGCTAGAGGGACAAGAAGACCGTGAGCAGAAAGAAGAGGCTGATTTAACCGGTTTTGCTGATAGCCTTGAGACGATGCTAGAGGGACAAGAAGATCATGAGCAGCCAGAAGATGCTGATTTAACCGGTTTTGCTGATAGCCTTGAGACGATGCTAGAGGGACATGAAGATCGTGAGCAGCCAGAAGAGGCTGAATTAACCGTTACTCAACAACAACAACAACAACAACAACAACAACAACGTCAAGAAGATTGTGACGTTACTCAAGAGCAAGAAAAAGATGATGTGATGGTACTGATAAACAATCCTAATGATGCCCTCGCATTGGGGAATTATGAGATTATTGATCTAACTAGGGTTGATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

281

Amino Acids

32.2

Weight (kDa)

4.61

Isoelectric Point (pI)

42.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	5 - 103	2.1e-15	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0020191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03490 AT1G19040 AT1G35890 AT3G46565 AT5G18037 AT5G18300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	194, 243, 264
AclWI	GGATC	4 cut(s)	28, 48, 367, 380
AfaI	GTAC	3 cut(s)	182, 228, 771
AfiI	CCNNNNNNNGG	2 cut(s)	355, 802
AgeI	ACCGGT	3 cut(s)	452, 527, 602
AgsI	TTSAA	1 cut(s)	166
AluBI	AGCT	1 cut(s)	469
AluI	AGCT	1 cut(s)	469
Alw26I	GTCTC	2 cut(s)	542, 617
AlwI	GGATC	4 cut(s)	28, 48, 367, 380
ApeKI	GCWGC	2 cut(s)	580, 655
AsiGI	ACCGGT	3 cut(s)	452, 527, 602
AsuHPI	GGTGA	2 cut(s)	64, 335
AsuII	TTCGAA	1 cut(s)	67
BamHI	GGATCC	1 cut(s)	372
BbsI	GAAGAC	1 cut(s)	501
BbvI	GCAGC	2 cut(s)	592, 667
BccI	CCATC	4 cut(s)	278, 320, 429, 760
BclI	TGATCA	1 cut(s)	463
BcoDI	GTCTC	2 cut(s)	542, 617
BfaI	CTAG	5 cut(s)	44, 482, 557, 632, 831
BisI	GCNGC	4 cut(s)	243, 265, 581, 656
BlsI	GCNGC	4 cut(s)	244, 266, 582, 657
BmiI	GGNNCC	1 cut(s)	374
BmsI	GCATC	6 cut(s)	433, 468, 543, 580, 618, 781
BpiI	GAAGAC	1 cut(s)	501
Bpu14I	TTCGAA	1 cut(s)	67
BpuEI	CTTGAG	4 cut(s)	491, 566, 641, 726
BsaAI	YACGTR	1 cut(s)	148
BsaJI	CCNNGG	1 cut(s)	131
BsaWI	WCCGGW	5 cut(s)	13, 231, 452, 527, 602
Bsc4I	CCNNNNNNNGG	2 cut(s)	355, 802
Bse118I	RCCGGY	3 cut(s)	452, 527, 602
BseDI	CCNNGG	1 cut(s)	131
BseGI	GGATG	2 cut(s)	114, 448
BseLI	CCNNNNNNNGG	2 cut(s)	355, 802
BseMII	CTCAG	1 cut(s)	452
BseRI	GAGGAG	1 cut(s)	264
BseXI	GCAGC	2 cut(s)	592, 667
BshTI	ACCGGT	3 cut(s)	452, 527, 602
BsiSI	CCGG	5 cut(s)	14, 232, 453, 528, 603
BslFI	GGGAC	3 cut(s)	501, 576, 651
BslI	CCNNNNNNNGG	2 cut(s)	355, 802
BsmAI	GTCTC	2 cut(s)	542, 617
BsmBI	CGTCTC	2 cut(s)	542, 617
BsmFI	GGGAC	3 cut(s)	501, 576, 651
Bsp119I	TTCGAA	1 cut(s)	67
Bsp143I	GATC	8 cut(s)	20, 40, 297, 372, 463, 571, 646, 823
BspACI	CCGC	3 cut(s)	194, 243, 264
BspCNI	CTCAG	1 cut(s)	451
BspHI	TCATGA	1 cut(s)	574
BspLI	GGNNCC	1 cut(s)	374
BspPI	GGATC	4 cut(s)	28, 48, 367, 380
BspT104I	TTCGAA	1 cut(s)	67
BsrFI	RCCGGY	3 cut(s)	452, 527, 602
BssAI	RCCGGY	3 cut(s)	452, 527, 602
BssECI	CCNNGG	1 cut(s)	131
BssMI	GATC	8 cut(s)	20, 40, 297, 372, 463, 571, 646, 823
BssT1I	CCWWGG	1 cut(s)	131
Bst4CI	ACNGT	3 cut(s)	27, 500, 679
Bst6I	CTCTTC	2 cut(s)	507, 657
BstBAI	YACGTR	1 cut(s)	148
BstBI	TTCGAA	1 cut(s)	67
BstDEI	CTNAG	1 cut(s)	438
BstENI	CCTNNNNNAGG	1 cut(s)	353
BstF5I	GGATG	2 cut(s)	114, 448
BstKTI	GATC	8 cut(s)	23, 43, 300, 375, 466, 574, 649, 826
BstMAI	GTCTC	2 cut(s)	542, 617
BstMBI	GATC	8 cut(s)	20, 40, 297, 372, 463, 571, 646, 823
BstMWI	GCNNNNNNNGC	1 cut(s)	264
BstNSI	RCATGY	1 cut(s)	316
BstV1I	GCAGC	2 cut(s)	592, 667
BstV2I	GAAGAC	1 cut(s)	501
BstX2I	RGATCY	2 cut(s)	40, 372
BstYI	RGATCY	2 cut(s)	40, 372
BtsCI	GGATG	2 cut(s)	114, 448
CciI	TCATGA	1 cut(s)	574
Cfr10I	RCCGGY	3 cut(s)	452, 527, 602
Csp6I	GTAC	3 cut(s)	181, 227, 770
CspAI	ACCGGT	3 cut(s)	452, 527, 602
CviAII	CATG	3 cut(s)	313, 575, 641
CviQI	GTAC	3 cut(s)	181, 227, 770
DdeI	CTNAG	1 cut(s)	438
DpnI	GATC	8 cut(s)	22, 42, 299, 374, 465, 573, 648, 825
DpnII	GATC	8 cut(s)	20, 40, 297, 372, 463, 571, 646, 823
Eam1104I	CTCTTC	2 cut(s)	507, 657
EarI	CTCTTC	2 cut(s)	507, 657
Eco130I	CCWWGG	1 cut(s)	131
EcoNI	CCTNNNNNAGG	1 cut(s)	353
EcoT14I	CCWWGG	1 cut(s)	131
ErhI	CCWWGG	1 cut(s)	131
Esp3I	CGTCTC	2 cut(s)	542, 617
FaeI	CATG	3 cut(s)	316, 578, 644
FaiI	YATR	6 cut(s)	101, 110, 314, 576, 642, 813
FalI	AAGNNNNNCTT	2 cut(s)	347, 379
FaqI	GGGAC	3 cut(s)	501, 576, 651
FatI	CATG	3 cut(s)	312, 574, 640
FbaI	TGATCA	1 cut(s)	463
Fnu4HI	GCNGC	4 cut(s)	243, 265, 581, 656
FokI	GGATG	2 cut(s)	101, 455
Fsp4HI	GCNGC	4 cut(s)	243, 265, 581, 656
FspBI	CTAG	5 cut(s)	44, 482, 557, 632, 831
GluI	GCNGC	4 cut(s)	243, 265, 581, 656
HapII	CCGG	5 cut(s)	14, 232, 453, 528, 603
Hin1II	CATG	3 cut(s)	316, 578, 644
HincII	GTYRAC	2 cut(s)	400, 418
HindII	GTYRAC	2 cut(s)	400, 418
HinfI	GANTC	3 cut(s)	7, 411, 436
HpaI	GTTAAC	1 cut(s)	418
HpaII	CCGG	5 cut(s)	14, 232, 453, 528, 603
HphI	GGTGA	2 cut(s)	64, 335
Hpy166II	GTNNAC	4 cut(s)	151, 229, 400, 418
Hpy188I	TCNGA	5 cut(s)	36, 90, 372, 377, 435
Hpy188III	TCNNGA	5 cut(s)	440, 575, 650, 722, 743
Hpy8I	GTNNAC	4 cut(s)	151, 229, 400, 418
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	2 cut(s)	229, 254
HpyCH4III	ACNGT	3 cut(s)	27, 500, 679
HpyCH4IV	ACGT	4 cut(s)	147, 396, 718, 735
HpyCH4V	TGCA	1 cut(s)	316
HpyF10VI	GCNNNNNNNGC	1 cut(s)	264
HpyF3I	CTNAG	1 cut(s)	438
HpySE526I	ACGT	4 cut(s)	147, 396, 718, 735
Hsp92II	CATG	3 cut(s)	316, 578, 644
Ksp22I	TGATCA	1 cut(s)	463
KspAI	GTTAAC	1 cut(s)	418
Kzo9I	GATC	8 cut(s)	20, 40, 297, 372, 463, 571, 646, 823
LpnPI	CCDG	9 cut(s)	27, 245, 410, 425, 466, 541, 597, 616, 672
Lsp1109I	GCAGC	2 cut(s)	592, 667
LweI	GCATC	6 cut(s)	433, 468, 543, 580, 618, 781
MaeI	CTAG	5 cut(s)	44, 482, 557, 632, 831
MaeII	ACGT	4 cut(s)	147, 396, 718, 735
MaeIII	GTNAC	4 cut(s)	330, 679, 731, 736
MalI	GATC	8 cut(s)	22, 42, 299, 374, 465, 573, 648, 825
MboI	GATC	8 cut(s)	20, 40, 297, 372, 463, 571, 646, 823
MflI	RGATCY	2 cut(s)	40, 372
MluCI	AATT	2 cut(s)	671, 808
MlyI	GAGTC	2 cut(s)	405, 430
MmeI	TCCRAC	2 cut(s)	59, 350
MseI	TTAA	6 cut(s)	221, 417, 449, 524, 599, 674
MspI	CCGG	5 cut(s)	14, 232, 453, 528, 603
MwoI	GCNNNNNNNGC	1 cut(s)	264
NdeII	GATC	8 cut(s)	20, 40, 297, 372, 463, 571, 646, 823
NlaIII	CATG	3 cut(s)	316, 578, 644
NlaIV	GGNNCC	1 cut(s)	374
NmuCI	GTSAC	1 cut(s)	731
NspI	RCATGY	1 cut(s)	316
NspV	TTCGAA	1 cut(s)	67
PagI	TCATGA	1 cut(s)	574
PfeI	GAWTC	1 cut(s)	7
PinAI	ACCGGT	3 cut(s)	452, 527, 602
PkrI	GCNGC	4 cut(s)	244, 266, 582, 657
PleI	GAGTC	2 cut(s)	405, 430
PpsI	GAGTC	2 cut(s)	405, 430
Ppu21I	YACGTR	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	374
PsuI	RGATCY	2 cut(s)	40, 372
RsaI	GTAC	3 cut(s)	182, 228, 771
RsaNI	GTAC	3 cut(s)	181, 227, 770
SaqAI	TTAA	6 cut(s)	221, 417, 449, 524, 599, 674
SatI	GCNGC	4 cut(s)	243, 265, 581, 656
Sau3AI	GATC	8 cut(s)	20, 40, 297, 372, 463, 571, 646, 823
SchI	GAGTC	2 cut(s)	405, 430
SfaNI	GCATC	6 cut(s)	433, 468, 543, 580, 618, 781
SfuI	TTCGAA	1 cut(s)	67
SmlI	CTYRAG	4 cut(s)	470, 545, 620, 741
SmoI	CTYRAG	4 cut(s)	470, 545, 620, 741
Sse9I	AATT	2 cut(s)	671, 808
SsiI	CCGC	3 cut(s)	194, 243, 264
SspMI	CTAG	5 cut(s)	44, 482, 557, 632, 831
StyI	CCWWGG	1 cut(s)	131
TaaI	ACNGT	3 cut(s)	27, 500, 679
TaiI	ACGT	4 cut(s)	150, 399, 721, 738
TaqI	TCGA	1 cut(s)	67
TasI	AATT	2 cut(s)	671, 808
TauI	GCSGC	2 cut(s)	245, 267
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	6 cut(s)	221, 417, 449, 524, 599, 674
Tru9I	TTAA	6 cut(s)	221, 417, 449, 524, 599, 674
TseFI	GTSAC	1 cut(s)	731
TseI	GCWGC	2 cut(s)	580, 655
Tsp45I	GTSAC	1 cut(s)	731
TspDTI	ATGAA	3 cut(s)	17, 88, 657
TspGWI	ACGGA	2 cut(s)	53, 321
XagI	CCTNNNNNAGG	1 cut(s)	353
XceI	RCATGY	1 cut(s)	316
XspI	CTAG	5 cut(s)	44, 482, 557, 632, 831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.