AT1G35890

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0020191
Physical Location & Seq
Forward (+)
13341300 .. 13341953
654 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G35890.1

Sequence Viewer

Length: 516 bp
ATGAAGGACGTTTATGCCAAGGAGCCATGGTTGCTGGACCATTCCAACGATCCTTTTTTCAAGGAAGACGAGTGGTACTACTTCTCGGCAAGGACTCAGATCTCCGAGAAAAAGATTGGACATGGTAACTACTCGAAGCGGAAGATCACCAGAGACGACAACGATGGCATCGACCGAGGGAAGTGGAGGTGGACCCGGAGGAAGAAGATAAGTTTGAGGATAGTCGTCTGGAAGATTCAGAAGTATAAGAAGTCCAAGAAGGACAAGAAGGATCATCAGCATGAAGCATCTTCTTCCTCTAAGCCGCAGCCGATCAAGAAAAAGAAGTCCAAGAAGGATCATCATGACGAAGCTTCTACTTCTTACTTGGAGCAGCAGCCTATCAATATTGAGTGTGAGTCTCTTCTAGCTGCTTATTTGGAACAGGAGCAGCCACTGCTATGGGATGTTCCGAACAAATCATCATCTTCTTGCTCTGTTGCGGAAACAGAAAGCAGAATGGAGAAGGAGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

171

Amino Acids

20.3

Weight (kDa)

9.3

Isoelectric Point (pI)

51.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03490 AT1G19040 AT1G35890 AT3G46565 AT5G18037 AT5G18300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 139, 305, 482
AclWI GGATC 3 cut(s) 44, 279, 345
AfaI GTAC 1 cut(s) 77
AgsI TTSAA 1 cut(s) 61
AluBI AGCT 2 cut(s) 353, 410
AluI AGCT 2 cut(s) 353, 410
Alw26I GTCTC 3 cut(s) 147, 405, 503
AlwI GGATC 3 cut(s) 44, 279, 345
AlwNI CAGNNNCTG 1 cut(s) 436
ApeKI GCWGC 5 cut(s) 307, 373, 376, 410, 430
AspS9I GGNCC 2 cut(s) 37, 192
AsuC2I CCSGG 1 cut(s) 196
AsuHPI GGTGA 1 cut(s) 139
AvaII GGWCC 2 cut(s) 37, 192
BbsI GAAGAC 1 cut(s) 72
BbvI GCAGC 5 cut(s) 319, 385, 388, 397, 442
BccI CCATC 1 cut(s) 158
BcnI CCSGG 1 cut(s) 196
BcoDI GTCTC 3 cut(s) 147, 405, 503
BfaI CTAG 1 cut(s) 407
BglII AGATCT 1 cut(s) 99
BisI GCNGC 6 cut(s) 305, 308, 374, 377, 411, 431
BlsI GCNGC 6 cut(s) 306, 309, 375, 378, 412, 432
Bme1390I CCNGG 1 cut(s) 196
Bme18I GGWCC 2 cut(s) 37, 192
BmgT120I GGNCC 2 cut(s) 37, 192
BmiI GGNNCC 2 cut(s) 24, 194
BmrFI CCNGG 1 cut(s) 196
BmsI GCATC 2 cut(s) 177, 296
BpiI GAAGAC 1 cut(s) 72
BpuMI CCSGG 1 cut(s) 196
BsaJI CCNNGG 3 cut(s) 18, 26, 175
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
BseDI CCNNGG 3 cut(s) 18, 26, 175
BseGI GGATG 1 cut(s) 451
BseMII CTCAG 1 cut(s) 110
BseXI GCAGC 5 cut(s) 319, 385, 388, 397, 442
Bsh1285I CGRYCG 1 cut(s) 175
BsiEI CGRYCG 1 cut(s) 175
BsiSI CCGG 1 cut(s) 196
BsmAI GTCTC 3 cut(s) 147, 405, 503
BsmBI CGTCTC 1 cut(s) 147
Bsp143I GATC 6 cut(s) 49, 99, 144, 271, 312, 337
Bsp19I CCATGG 1 cut(s) 26
BspACI CCGC 3 cut(s) 139, 305, 482
BspCNI CTCAG 1 cut(s) 109
BspHI TCATGA 1 cut(s) 343
BspLI GGNNCC 2 cut(s) 24, 194
BspPI GGATC 3 cut(s) 44, 279, 345
BssECI CCNNGG 3 cut(s) 18, 26, 175
BssMI GATC 6 cut(s) 49, 99, 144, 271, 312, 337
BssT1I CCWWGG 2 cut(s) 18, 26
Bst6I CTCTTC 1 cut(s) 408
BstAPI GCANNNNNTGC 1 cut(s) 436
BstDEI CTNAG 2 cut(s) 96, 300
BstDSI CCRYGG 1 cut(s) 26
BstF5I GGATG 1 cut(s) 451
BstKTI GATC 6 cut(s) 52, 102, 147, 274, 315, 340
BstMAI GTCTC 3 cut(s) 147, 405, 503
BstMBI GATC 6 cut(s) 49, 99, 144, 271, 312, 337
BstMCI CGRYCG 1 cut(s) 175
BstMWI GCNNNNNNNGC 2 cut(s) 31, 436
BstSCI CCNGG 1 cut(s) 194
BstV1I GCAGC 5 cut(s) 319, 385, 388, 397, 442
BstV2I GAAGAC 1 cut(s) 72
BstX2I RGATCY 1 cut(s) 99
BstXI CCANNNNNNTGG 1 cut(s) 441
BstYI RGATCY 1 cut(s) 99
BtgI CCRYGG 1 cut(s) 26
BtsCI GGATG 1 cut(s) 451
BtsI GCAGTG 1 cut(s) 434
BtsIMutI CAGTG 1 cut(s) 434
CaiI CAGNNNCTG 1 cut(s) 436
CciI TCATGA 1 cut(s) 343
Cfr13I GGNCC 2 cut(s) 37, 192
Csp6I GTAC 1 cut(s) 76
CviAII CATG 5 cut(s) 27, 122, 281, 344, 513
CviJI RGCY 7 cut(s) 25, 304, 310, 353, 379, 410, 433
CviKI_1 RGCY 7 cut(s) 25, 304, 310, 353, 379, 410, 433
CviQI GTAC 1 cut(s) 76
DdeI CTNAG 2 cut(s) 96, 300
DpnI GATC 6 cut(s) 51, 101, 146, 273, 314, 339
DpnII GATC 6 cut(s) 49, 99, 144, 271, 312, 337
Eam1104I CTCTTC 1 cut(s) 408
EarI CTCTTC 1 cut(s) 408
Eco130I CCWWGG 2 cut(s) 18, 26
Eco47I GGWCC 2 cut(s) 37, 192
EcoT14I CCWWGG 2 cut(s) 18, 26
ErhI CCWWGG 2 cut(s) 18, 26
Esp3I CGTCTC 1 cut(s) 147
FaeI CATG 5 cut(s) 30, 125, 284, 347, 516
FaiI YATR 8 cut(s) 15, 28, 123, 246, 282, 345, 442, 514
FatI CATG 5 cut(s) 26, 121, 280, 343, 512
Fnu4HI GCNGC 6 cut(s) 305, 308, 374, 377, 411, 431
FokI GGATG 1 cut(s) 458
Fsp4HI GCNGC 6 cut(s) 305, 308, 374, 377, 411, 431
FspBI CTAG 1 cut(s) 407
GluI GCNGC 6 cut(s) 305, 308, 374, 377, 411, 431
HapII CCGG 1 cut(s) 196
Hin1II CATG 5 cut(s) 30, 125, 284, 347, 516
HindIII AAGCTT 1 cut(s) 351
HinfI GANTC 3 cut(s) 94, 235, 398
HpaII CCGG 1 cut(s) 196
HphI GGTGA 1 cut(s) 139
Hpy166II GTNNAC 1 cut(s) 192
Hpy188I TCNGA 4 cut(s) 99, 106, 240, 453
Hpy188III TCNNGA 3 cut(s) 229, 316, 344
Hpy8I GTNNAC 1 cut(s) 192
HpyAV CCTTC 4 cut(s) 253, 262, 328, 499
HpyCH4IV ACGT 1 cut(s) 9
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 436
HpyF3I CTNAG 2 cut(s) 96, 300
HpySE526I ACGT 1 cut(s) 9
Hsp92II CATG 5 cut(s) 30, 125, 284, 347, 516
Kzo9I GATC 6 cut(s) 49, 99, 144, 271, 312, 337
LmnI GCTCC 3 cut(s) 22, 370, 427
LpnPI CCDG 5 cut(s) 20, 163, 209, 214, 410
Lsp1109I GCAGC 5 cut(s) 319, 385, 388, 397, 442
LweI GCATC 2 cut(s) 177, 296
MaeI CTAG 1 cut(s) 407
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 125
MalI GATC 6 cut(s) 51, 101, 146, 273, 314, 339
MboI GATC 6 cut(s) 49, 99, 144, 271, 312, 337
MboII GAAGA 9 cut(s) 77, 154, 214, 217, 244, 282, 285, 395, 459
MflI RGATCY 1 cut(s) 99
MlyI GAGTC 2 cut(s) 88, 407
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 5 cut(s) 170, 180, 192, 210, 307
MslI CAYNNNNRTG 2 cut(s) 279, 439
MspI CCGG 1 cut(s) 196
MspR9I CCNGG 1 cut(s) 196
MwoI GCNNNNNNNGC 2 cut(s) 31, 436
NciI CCSGG 1 cut(s) 196
NcoI CCATGG 1 cut(s) 26
NdeII GATC 6 cut(s) 49, 99, 144, 271, 312, 337
NlaIII CATG 5 cut(s) 30, 125, 284, 347, 516
NlaIV GGNNCC 2 cut(s) 24, 194
NmeAIII GCCGAG 1 cut(s) 65
PagI TCATGA 1 cut(s) 343
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PfeI GAWTC 1 cut(s) 235
PkrI GCNGC 6 cut(s) 306, 309, 375, 378, 412, 432
PleI GAGTC 2 cut(s) 88, 406
PpsI GAGTC 2 cut(s) 88, 406
PspN4I GGNNCC 2 cut(s) 24, 194
PspPI GGNCC 2 cut(s) 37, 192
PstNI CAGNNNCTG 1 cut(s) 436
PsuI RGATCY 1 cut(s) 99
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
RseI CAYNNNNRTG 2 cut(s) 279, 439
SatI GCNGC 6 cut(s) 305, 308, 374, 377, 411, 431
Sau3AI GATC 6 cut(s) 49, 99, 144, 271, 312, 337
Sau96I GGNCC 2 cut(s) 37, 192
SchI GAGTC 2 cut(s) 88, 407
ScrFI CCNGG 1 cut(s) 196
SetI ASST 4 cut(s) 12, 191, 355, 412
SfaNI GCATC 2 cut(s) 177, 296
SinI GGWCC 2 cut(s) 37, 192
SmiMI CAYNNNNRTG 2 cut(s) 279, 439
SsiI CCGC 3 cut(s) 139, 305, 482
SspI AATATT 1 cut(s) 388
SspMI CTAG 1 cut(s) 407
StyD4I CCNGG 1 cut(s) 194
StyI CCWWGG 2 cut(s) 18, 26
TaiI ACGT 1 cut(s) 12
TaqI TCGA 2 cut(s) 134, 171
TaqII GACCGA 1 cut(s) 189
TauI GCSGC 1 cut(s) 307
TfiI GAWTC 1 cut(s) 235
TscAI CASTG 1 cut(s) 441
TseI GCWGC 5 cut(s) 307, 373, 376, 410, 430
TspDTI ATGAA 2 cut(s) 17, 297
TspRI CASTG 1 cut(s) 441
VpaK11BI GGWCC 2 cut(s) 37, 192
XspI CTAG 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.