Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0020191

Physical Location & Seq

Genomic Coordinates Forward (+)

6576077 .. 6577413

Gene Structure 1337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G19040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTCAGAGGTGTTAACACGCGGGTTTCGATTTCGCCCAGCTGATGAAGAAGTGACAGACTACCTTATGCGGAAGACACAATCGCCGGAGTTCAGCTGCTTTATCAAAACCATAGACTTGTACGACAAGGATCCGTGGGTACTTGGGCATGTGAGAGATCCGTGTTACAATCACTATGAATGGTATTACTTTGTTAAGAAAAACCCCCTCGGGAATGAGTACTTAGATAAGCCTAGATTGAACGGGTTTGAACATCCACGCTTGAAATGGGATGTGTTGAAGCAGATACATGATGCTCTGAGTTCTGGTCAGAACGTCCCACCAAGTGTCTTTACTTACGGATTCCGATTTCATCCGACTGATCAAGAGCTACTCTCTTTGTACCTCACTCCAAAGGCCCATTCACCAGACTTCAGCTGCTTCATAAGAGAGAGAGAGAGCTATATGCCATGGAGCCATGGCTTCTTGAACATGTTAGATCTCCTTTTTACAAGGACAGTGAATGGTACTACTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

172

Amino Acids

20.45

Weight (kDa)

6.37

Isoelectric Point (pI)

33.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	7 - 68	6.2e-11	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03490 AT1G19040 AT1G35890 AT3G46565 AT5G18037 AT5G18300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	21
AciI	CCGC	2 cut(s)	21, 70
AclWI	GGATC	3 cut(s)	125, 138, 152
AcuI	CTGAAG	1 cut(s)	397
AdeI	CACNNNGTG	1 cut(s)	326
AfaI	GTAC	5 cut(s)	122, 141, 221, 383, 508
AflIII	ACRYGT	1 cut(s)	471
AgsI	TTSAA	5 cut(s)	241, 251, 265, 280, 469
AjuI	GAANNNNNNNTTGG	2 cut(s)	385, 417
AluBI	AGCT	5 cut(s)	41, 96, 370, 417, 441
AluI	AGCT	5 cut(s)	41, 96, 370, 417, 441
AlwI	GGATC	3 cut(s)	125, 138, 152
Ama87I	CYCGRG	1 cut(s)	209
AoxI	GGCC	1 cut(s)	396
ApeKI	GCWGC	2 cut(s)	96, 417
AspS9I	GGNCC	1 cut(s)	397
AsuHPI	GGTGA	1 cut(s)	396
AvaI	CYCGRG	1 cut(s)	209
BamHI	GGATCC	1 cut(s)	130
BbsI	GAAGAC	1 cut(s)	80
BbvI	GCAGC	2 cut(s)	83, 404
BclI	TGATCA	1 cut(s)	361
BfaI	CTAG	1 cut(s)	234
BglII	AGATCT	1 cut(s)	478
BisI	GCNGC	2 cut(s)	97, 418
BlsI	GCNGC	2 cut(s)	98, 419
BmcAI	AGTACT	1 cut(s)	221
BmeT110I	CYCGRG	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	397
BmiI	GGNNCC	2 cut(s)	132, 455
BmsI	GCATC	1 cut(s)	283
BpiI	GAAGAC	1 cut(s)	80
BplI	GAGNNNNNCTC	2 cut(s)	359, 391
BsaJI	CCNNGG	4 cut(s)	134, 208, 449, 457
BseDI	CCNNGG	4 cut(s)	134, 208, 449, 457
BseGI	GGATG	3 cut(s)	253, 277, 352
BseMII	CTCAG	1 cut(s)	290
BseXI	GCAGC	2 cut(s)	83, 404
BseYI	CCCAGC	1 cut(s)	37
Bsh1236I	CGCG	1 cut(s)	21
BshFI	GGCC	1 cut(s)	398
BsiHKCI	CYCGRG	1 cut(s)	209
BsiSI	CCGG	1 cut(s)	86
BslFI	GGGAC	1 cut(s)	302
BsmFI	GGGAC	1 cut(s)	302
BsnI	GGCC	1 cut(s)	398
BsoBI	CYCGRG	1 cut(s)	209
Bsp143I	GATC	4 cut(s)	130, 157, 361, 478
Bsp19I	CCATGG	2 cut(s)	449, 457
BspACI	CCGC	2 cut(s)	21, 70
BspANI	GGCC	1 cut(s)	398
BspCNI	CTCAG	1 cut(s)	291
BspFNI	CGCG	1 cut(s)	21
BspLI	GGNNCC	2 cut(s)	132, 455
BspPI	GGATC	3 cut(s)	125, 138, 152
BssECI	CCNNGG	4 cut(s)	134, 208, 449, 457
BssMI	GATC	4 cut(s)	130, 157, 361, 478
BssT1I	CCWWGG	2 cut(s)	449, 457
Bst4CI	ACNGT	1 cut(s)	499
BstDEI	CTNAG	2 cut(s)	223, 299
BstDSI	CCRYGG	3 cut(s)	134, 449, 457
BstF5I	GGATG	3 cut(s)	253, 277, 352
BstFNI	CGCG	1 cut(s)	21
BstKTI	GATC	4 cut(s)	133, 160, 364, 481
BstMBI	GATC	4 cut(s)	130, 157, 361, 478
BstNSI	RCATGY	2 cut(s)	152, 475
BstUI	CGCG	1 cut(s)	21
BstV1I	GCAGC	2 cut(s)	83, 404
BstV2I	GAAGAC	1 cut(s)	80
BstX2I	RGATCY	3 cut(s)	130, 157, 478
BstYI	RGATCY	3 cut(s)	130, 157, 478
BsuRI	GGCC	1 cut(s)	398
BtgI	CCRYGG	3 cut(s)	134, 449, 457
BtsCI	GGATG	3 cut(s)	253, 277, 352
BtsIMutI	CAGTG	1 cut(s)	504
Cfr13I	GGNCC	1 cut(s)	397
Csp6I	GTAC	5 cut(s)	121, 140, 220, 382, 507
CviAII	CATG	5 cut(s)	149, 290, 450, 458, 472
CviJI	RGCY	9 cut(s)	41, 96, 232, 370, 398, 417, 441, 456, 462
CviKI_1	RGCY	9 cut(s)	41, 96, 232, 370, 398, 417, 441, 456, 462
CviQI	GTAC	5 cut(s)	121, 140, 220, 382, 507
DdeI	CTNAG	2 cut(s)	223, 299
DpnI	GATC	4 cut(s)	132, 159, 363, 480
DpnII	GATC	4 cut(s)	130, 157, 361, 478
DraIII	CACNNNGTG	1 cut(s)	326
Eco130I	CCWWGG	2 cut(s)	449, 457
Eco57I	CTGAAG	1 cut(s)	397
Eco88I	CYCGRG	1 cut(s)	209
EcoT14I	CCWWGG	2 cut(s)	449, 457
ErhI	CCWWGG	2 cut(s)	449, 457
FaeI	CATG	5 cut(s)	152, 293, 453, 461, 475
FaqI	GGGAC	1 cut(s)	302
FatI	CATG	5 cut(s)	148, 289, 449, 457, 471
FauI	CCCGC	1 cut(s)	14
FbaI	TGATCA	1 cut(s)	361
Fnu4HI	GCNGC	2 cut(s)	97, 418
FokI	GGATG	3 cut(s)	240, 284, 339
Fsp4HI	GCNGC	2 cut(s)	97, 418
FspBI	CTAG	1 cut(s)	234
GluI	GCNGC	2 cut(s)	97, 418
GsaI	CCCAGC	1 cut(s)	41
HaeIII	GGCC	1 cut(s)	398
HapII	CCGG	1 cut(s)	86
Hin1II	CATG	5 cut(s)	152, 293, 453, 461, 475
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HinfI	GANTC	1 cut(s)	342
HpaI	GTTAAC	1 cut(s)	15
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	1 cut(s)	396
Hpy166II	GTNNAC	1 cut(s)	15
Hpy188I	TCNGA	5 cut(s)	7, 300, 312, 347, 357
Hpy188III	TCNNGA	3 cut(s)	211, 365, 466
Hpy8I	GTNNAC	1 cut(s)	15
HpyCH4III	ACNGT	1 cut(s)	499
HpyCH4IV	ACGT	1 cut(s)	315
HpyF3I	CTNAG	2 cut(s)	223, 299
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	5 cut(s)	152, 293, 453, 461, 475
Ksp22I	TGATCA	1 cut(s)	361
KspAI	GTTAAC	1 cut(s)	15
Kzo9I	GATC	4 cut(s)	130, 157, 361, 478
LmnI	GCTCC	1 cut(s)	453
LpnPI	CCDG	4 cut(s)	51, 99, 291, 420
Lsp1109I	GCAGC	2 cut(s)	83, 404
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	1 cut(s)	234
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	2 cut(s)	52, 164
MalI	GATC	4 cut(s)	132, 159, 363, 480
MboI	GATC	4 cut(s)	130, 157, 361, 478
MboII	GAAGA	2 cut(s)	59, 85
MflI	RGATCY	3 cut(s)	130, 157, 478
MmeI	TCCRAC	1 cut(s)	380
MnlI	CCTC	2 cut(s)	218, 395
MseI	TTAA	2 cut(s)	14, 195
MspA1I	CMGCKG	3 cut(s)	41, 96, 417
MspI	CCGG	1 cut(s)	86
MvnI	CGCG	1 cut(s)	21
NcoI	CCATGG	2 cut(s)	449, 457
NdeII	GATC	4 cut(s)	130, 157, 361, 478
NlaIII	CATG	5 cut(s)	152, 293, 453, 461, 475
NlaIV	GGNNCC	2 cut(s)	132, 455
NmuCI	GTSAC	1 cut(s)	52
NspI	RCATGY	2 cut(s)	152, 475
PciI	ACATGT	1 cut(s)	471
PcsI	WCGNNNNNNNCGW	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	342
PkrI	GCNGC	2 cut(s)	98, 419
PscI	ACATGT	1 cut(s)	471
PspFI	CCCAGC	1 cut(s)	37
PspN4I	GGNNCC	2 cut(s)	132, 455
PspPI	GGNCC	1 cut(s)	397
PsuI	RGATCY	3 cut(s)	130, 157, 478
PvuII	CAGCTG	3 cut(s)	41, 96, 417
RsaI	GTAC	5 cut(s)	122, 141, 221, 383, 508
RsaNI	GTAC	5 cut(s)	121, 140, 220, 382, 507
SaqAI	TTAA	2 cut(s)	14, 195
SatI	GCNGC	2 cut(s)	97, 418
Sau3AI	GATC	4 cut(s)	130, 157, 361, 478
Sau96I	GGNCC	1 cut(s)	397
ScaI	AGTACT	1 cut(s)	221
SetI	ASST	9 cut(s)	12, 43, 66, 98, 318, 372, 387, 419, 443
SfaNI	GCATC	1 cut(s)	283
SsiI	CCGC	2 cut(s)	21, 70
SspMI	CTAG	1 cut(s)	234
StyI	CCWWGG	2 cut(s)	449, 457
TaaI	ACNGT	1 cut(s)	499
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	1 cut(s)	28
TatI	WGTACW	1 cut(s)	219
TfiI	GAWTC	1 cut(s)	342
Tru1I	TTAA	2 cut(s)	14, 195
Tru9I	TTAA	2 cut(s)	14, 195
TscAI	CASTG	1 cut(s)	504
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	2 cut(s)	96, 417
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	4 cut(s)	60, 192, 341, 412
TspGWI	ACGGA	3 cut(s)	123, 150, 354
TspRI	CASTG	1 cut(s)	504
XceI	RCATGY	2 cut(s)	152, 475
XcmI	CCANNNNNNNNNTGG	1 cut(s)	264
XspI	CTAG	1 cut(s)	234
ZrmI	AGTACT	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.