AT3G46565

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0020191
Physical Location & Seq
Forward (+)
17144931 .. 17145205
275 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G46565.1

Sequence Viewer

Length: 261 bp
ATGAAGGATGTTTATGCCAAGGAGCCATGGTTGCTTGACCATTCCAACAATTCTTTTTTCAAAGAAGACGAGTGGTACTACTTCTCGACAAGAACTCAAATCTCCGAGAAGAAGATTGGTCGTGGGGAGATCACGGGAGACAACAACAATGGCATCGGCCGCGGGAATTGGAGGGTGAATGAGAAAGAATATATCATCGACAAGGACATAGGGGATATCATTGGGATCAAGAAAAACCTAACAGATAAGAGCGGCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

86

Amino Acids

10.02

Weight (kDa)

5.79

Isoelectric Point (pI)

4.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 3 - 81 5.2e-08 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0020191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03490 AT1G19040 AT1G35890 AT3G46565 AT5G18037 AT5G18300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 252
AccII CGCG 1 cut(s) 162
AciI CCGC 3 cut(s) 160, 162, 252
AclWI GGATC 1 cut(s) 233
AcoI YGGCCR 1 cut(s) 157
AfaI GTAC 1 cut(s) 77
AgsI TTSAA 1 cut(s) 61
Alw26I GTCTC 1 cut(s) 132
AlwI GGATC 1 cut(s) 233
AoxI GGCC 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 187
BbsI GAAGAC 1 cut(s) 72
BcoDI GTCTC 1 cut(s) 132
BisI GCNGC 2 cut(s) 160, 253
BlsI GCNGC 2 cut(s) 161, 254
BmiI GGNNCC 1 cut(s) 24
BmsI GCATC 1 cut(s) 162
BpiI GAAGAC 1 cut(s) 72
BsaJI CCNNGG 3 cut(s) 18, 26, 160
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
BseDI CCNNGG 3 cut(s) 18, 26, 160
BseGI GGATG 1 cut(s) 13
BseX3I CGGCCG 1 cut(s) 157
Bsh1236I CGCG 1 cut(s) 162
Bsh1285I CGRYCG 1 cut(s) 160
BshFI GGCC 1 cut(s) 159
BsiEI CGRYCG 1 cut(s) 160
BsmAI GTCTC 1 cut(s) 132
BsnI GGCC 1 cut(s) 159
Bsp143I GATC 2 cut(s) 129, 225
Bsp19I CCATGG 1 cut(s) 26
BspACI CCGC 3 cut(s) 160, 162, 252
BspANI GGCC 1 cut(s) 159
BspFNI CGCG 1 cut(s) 162
BspLI GGNNCC 1 cut(s) 24
BspPI GGATC 1 cut(s) 233
BsrBI CCGCTC 1 cut(s) 252
BssECI CCNNGG 3 cut(s) 18, 26, 160
BssMI GATC 2 cut(s) 129, 225
BssT1I CCWWGG 2 cut(s) 18, 26
BstDSI CCRYGG 2 cut(s) 26, 160
BstF5I GGATG 1 cut(s) 13
BstFNI CGCG 1 cut(s) 162
BstKTI GATC 2 cut(s) 132, 228
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 2 cut(s) 129, 225
BstMCI CGRYCG 1 cut(s) 160
BstMWI GCNNNNNNNGC 2 cut(s) 31, 159
BstUI CGCG 1 cut(s) 162
BstV2I GAAGAC 1 cut(s) 72
BstZI CGGCCG 1 cut(s) 157
BsuRI GGCC 1 cut(s) 159
BtgI CCRYGG 2 cut(s) 26, 160
BtsCI GGATG 1 cut(s) 13
Cfr42I CCGCGG 1 cut(s) 163
Csp6I GTAC 1 cut(s) 76
CviAII CATG 1 cut(s) 27
CviJI RGCY 2 cut(s) 25, 159
CviKI_1 RGCY 2 cut(s) 25, 159
CviQI GTAC 1 cut(s) 76
DpnI GATC 2 cut(s) 131, 227
DpnII GATC 2 cut(s) 129, 225
EaeI YGGCCR 1 cut(s) 157
EagI CGGCCG 1 cut(s) 157
EclXI CGGCCG 1 cut(s) 157
Eco130I CCWWGG 2 cut(s) 18, 26
Eco32I GATATC 1 cut(s) 217
Eco52I CGGCCG 1 cut(s) 157
EcoRV GATATC 1 cut(s) 217
EcoT14I CCWWGG 2 cut(s) 18, 26
ErhI CCWWGG 2 cut(s) 18, 26
FaeI CATG 1 cut(s) 30
FaiI YATR 4 cut(s) 15, 28, 192, 209
FatI CATG 1 cut(s) 26
FauI CCCGC 1 cut(s) 155
Fnu4HI GCNGC 2 cut(s) 160, 253
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 2 cut(s) 160, 253
GluI GCNGC 2 cut(s) 160, 253
HaeIII GGCC 1 cut(s) 159
Hin1II CATG 1 cut(s) 30
HphI GGTGA 1 cut(s) 187
Hpy188I TCNGA 1 cut(s) 106
Hpy188III TCNNGA 2 cut(s) 85, 229
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 159
Hsp92II CATG 1 cut(s) 30
KspI CCGCGG 1 cut(s) 163
Kzo9I GATC 2 cut(s) 129, 225
LmnI GCTCC 1 cut(s) 22
LweI GCATC 1 cut(s) 162
MalI GATC 2 cut(s) 131, 227
MbiI CCGCTC 1 cut(s) 252
MboI GATC 2 cut(s) 129, 225
MboII GAAGA 3 cut(s) 77, 121, 124
MluCI AATT 2 cut(s) 49, 166
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 1 cut(s) 165
MspA1I CMGCKG 1 cut(s) 162
MvnI CGCG 1 cut(s) 162
MwoI GCNNNNNNNGC 2 cut(s) 31, 159
NcoI CCATGG 1 cut(s) 26
NdeII GATC 2 cut(s) 129, 225
NlaIII CATG 1 cut(s) 30
NlaIV GGNNCC 1 cut(s) 24
PkrI GCNGC 2 cut(s) 161, 254
PspN4I GGNNCC 1 cut(s) 24
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
SacII CCGCGG 1 cut(s) 163
SatI GCNGC 2 cut(s) 160, 253
Sau3AI GATC 2 cut(s) 129, 225
SetI ASST 1 cut(s) 240
SfaNI GCATC 1 cut(s) 162
Sfr303I CCGCGG 1 cut(s) 163
SgrBI CCGCGG 1 cut(s) 163
Sse9I AATT 2 cut(s) 49, 166
SsiI CCGC 3 cut(s) 160, 162, 252
StyI CCWWGG 2 cut(s) 18, 26
TaqI TCGA 2 cut(s) 86, 198
TasI AATT 2 cut(s) 49, 166
TauI GCSGC 2 cut(s) 162, 255
TspDTI ATGAA 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.