AT1G04590

Pentatricopeptide repeat-containing protein At4g18975

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009535
Physical Location & Seq
Reverse (-)
1258556 .. 1261470
2915 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G04590.2

Sequence Viewer

Length: 1146 bp
ATGGCGGGTTTCAGTTCTCTAATTCCTAGAACGCTTCTGAAACGCGCCGTTAGTAGCGCAACAAGAAATCTAACGGCGCCGTTAGCTTCTATTTCAGCAGCAAGAAATCTCTTCATTGGAGGAGGATGTGACGAAAATTATGGTGAGCCAGGAGTGTTTTCTCATTCCAATGGAATAAGAAAGTACAACACCGTTGGTAATGCTGGCGCACTAACTGGTCCATTTCATCATCTTCTTGGGGTCAACCAGACAAACAAGCCCGCCTTTTTAAGGGTCCAATCTATGAGCTATCAGTTTGTCGCTGATTCTCATTCATCTCCTAAACGTATTGTGAAGAATGAGGATGAGGAAGATTTTTCTGATTCATCAAAGAAGGGAAACGCTGAAAACCCTAGGAAACATCAAATTGGGGAGAACATACCCAAGAAGGATAAAATAAAGTTTCTTGTGAACACTCTTCTTGATATTGAAGATAATAAAGAGGCTGTTTATGGAGCTCTGGATGCTTGGGTTGCTTGGGAGCGCAATTTCCCCATTGCTTCCCTCAAAATAGTAATAGCTAGTCTTGAAAAGGAACATCAATGGCATCGAATGGTCCAGGTGATAAAGTGGATCCTAAGTAAGGGACAAGGGAACACGATGGGGACGTACGGACAGTTGATACGGGCGTTAGATATGGATCGTAGAGCAGAAGAGGCTCATGTTATCTGGCGAAAGAAAGTTGGGAACGATCTGCATTCTGTGCCTTGGCAATTATGCTTACAAATGATGCGCATATATTTCCGGAACAACATGTTACAGGAACTTGTTAAGCTATTCAAGGATCTGGAGAGTTATGACCGTAAGCCTCCGGACAAGCACATTGTGCAGACCGTGGCTGATGCTTATGAGCTTTTGGGAATGCTTGATGAGAAAGAACGGGTAGTGACGAAGTATAGCCATCTTTTACTTGGTACACCATCCGATGATAAACCAAGTAGATCTTCGAGGAAGAAGAAGAAACCAGAACTGAGGATTCCAGAAGCAACGACAGAAGGCGCAGTTGATGCAGCAAAAGCTGAAATCCAAGAAGAGCGAAAAGAAAATCTGGATAATCACCAAGAATCAGAAGCTGCCACTGAAAAACAATTCGAACATGGAGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

381

Amino Acids

43.04

Weight (kDa)

8.76

Isoelectric Point (pI)

33.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009535)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04590 AT1G04590
fragaria_vesca FvH4_5g00240 FvH4_5g00240 FvH4_5g00240 FvH4_5g00240 FvH4_5g00240 FvH4_5g00240 FvH4_5g00240
malus_domestica MD06G1063200.v1.1
prunus_persica Prupe.5G075000_v2.0.a1
pyrus_communis pycom06g06020
rosa_chinensis RchiOBHm_Chr7g0202441
rosa_laevigata RLG00000003603
rosa_multiflora Rmu_sc0031703.1_g000002
rosa_roxburghii Rroxscaffold_3G00254610
rosa_rugosa Rorug07G0070600
rosa_samantha Rh7AG198000 Rh7BG199300 Rh7CG209100 Rh7DG204900
rosa_wichuraiana Rw7G017370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 773
AccB1I GGYRCC 1 cut(s) 76
AccII CGCG 1 cut(s) 45
AccIII TCCGGA 2 cut(s) 783, 850
AciI CCGC 2 cut(s) 5, 261
AclWI GGATC 4 cut(s) 607, 620, 687, 831
AcyI GRCGYC 1 cut(s) 77
AdeI CACNNNGTG 1 cut(s) 865
AfaI GTAC 3 cut(s) 185, 650, 955
AfiI CCNNNNNNNGG 2 cut(s) 270, 622
AflIII ACRYGT 1 cut(s) 792
AgsI TTSAA 3 cut(s) 470, 569, 820
AjnI CCWGG 2 cut(s) 148, 597
AjuI GAANNNNNNNTTGG 2 cut(s) 967, 999
AluBI AGCT 8 cut(s) 86, 288, 497, 560, 814, 892, 1058, 1112
AluI AGCT 8 cut(s) 86, 288, 497, 560, 814, 892, 1058, 1112
Alw21I GWGCWC 1 cut(s) 499
AlwI GGATC 4 cut(s) 607, 620, 687, 831
AlwNI CAGNNNCTG 1 cut(s) 1112
Aor13HI TCCGGA 2 cut(s) 783, 850
ApeKI GCWGC 3 cut(s) 98, 1049, 1112
AspA2I CCTAGG 1 cut(s) 392
AspLEI GCGC 7 cut(s) 47, 59, 79, 209, 525, 774, 1040
AspS9I GGNCC 3 cut(s) 218, 274, 595
AsuHPI GGTGA 3 cut(s) 155, 613, 1088
AsuII TTCGAA 1 cut(s) 1131
AvaII GGWCC 3 cut(s) 218, 274, 595
AvrII CCTAGG 1 cut(s) 392
BaeI ACNNNNGTAYC 2 cut(s) 653, 686
BamHI GGATCC 1 cut(s) 612
BanI GGYRCC 1 cut(s) 76
BanII GRGCYC 1 cut(s) 499
Bbv12I GWGCWC 1 cut(s) 499
BbvI GCAGC 3 cut(s) 110, 1061, 1099
BccI CCATC 3 cut(s) 634, 948, 967
BceAI ACGGC 3 cut(s) 32, 64, 90
BciT130I CCWGG 2 cut(s) 150, 599
BfaI CTAG 3 cut(s) 27, 393, 561
BfoI RGCGCY 1 cut(s) 80
BglII AGATCT 1 cut(s) 980
BisI GCNGC 3 cut(s) 99, 1050, 1113
BlnI CCTAGG 1 cut(s) 392
BlsI GCNGC 3 cut(s) 100, 1051, 1114
Bme1390I CCNGG 2 cut(s) 150, 599
Bme18I GGWCC 3 cut(s) 218, 274, 595
BmgT120I GGNCC 3 cut(s) 218, 274, 595
BmiI GGNNCC 3 cut(s) 78, 275, 614
BmrFI CCNGG 2 cut(s) 150, 599
BmsI GCATC 5 cut(s) 493, 595, 759, 871, 1036
BpmI CTGGAG 1 cut(s) 848
Bpu14I TTCGAA 1 cut(s) 1131
BsaBI GATNNNNATC 1 cut(s) 678
BsaHI GRCGYC 1 cut(s) 77
BsaJI CCNNGG 3 cut(s) 392, 746, 873
BsaWI WCCGGW 2 cut(s) 783, 850
Bsc4I CCNNNNNNNGG 2 cut(s) 270, 622
Bse1I ACTGG 1 cut(s) 220
Bse3DI GCAATG 1 cut(s) 534
Bse8I GATNNNNATC 1 cut(s) 678
BseAI TCCGGA 2 cut(s) 783, 850
BseBI CCWGG 2 cut(s) 150, 599
BseDI CCNNGG 3 cut(s) 392, 746, 873
BseGI GGATG 4 cut(s) 131, 349, 508, 959
BseJI GATNNNNATC 1 cut(s) 678
BseLI CCNNNNNNNGG 2 cut(s) 270, 622
BseMI GCAATG 1 cut(s) 534
BseMII CTCAG 1 cut(s) 1001
BseNI ACTGG 1 cut(s) 220
BseRI GAGGAG 1 cut(s) 135
BseXI GCAGC 3 cut(s) 110, 1061, 1099
BsgI GTGCAG 1 cut(s) 887
Bsh1236I CGCG 1 cut(s) 45
BshNI GGYRCC 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 499
BsiSI CCGG 2 cut(s) 784, 851
BsiWI CGTACG 1 cut(s) 648
BslFI GGGAC 2 cut(s) 639, 658
BslI CCNNNNNNNGG 2 cut(s) 270, 622
BsmFI GGGAC 2 cut(s) 639, 658
BsmI GAATGC 2 cut(s) 736, 906
Bsp119I TTCGAA 1 cut(s) 1131
Bsp1286I GDGCHC 1 cut(s) 499
Bsp13I TCCGGA 2 cut(s) 783, 850
Bsp143I GATC 5 cut(s) 612, 679, 730, 823, 980
BspACI CCGC 2 cut(s) 5, 261
BspCNI CTCAG 1 cut(s) 1002
BspEI TCCGGA 2 cut(s) 783, 850
BspFNI CGCG 1 cut(s) 45
BspLI GGNNCC 3 cut(s) 78, 275, 614
BspPI GGATC 4 cut(s) 607, 620, 687, 831
BspQI GCTCTTC 1 cut(s) 1065
BspT104I TTCGAA 1 cut(s) 1131
BspT107I GGYRCC 1 cut(s) 76
BsrDI GCAATG 1 cut(s) 534
BsrI ACTGG 1 cut(s) 220
BssECI CCNNGG 3 cut(s) 392, 746, 873
BssMI GATC 5 cut(s) 612, 679, 730, 823, 980
BssNI GRCGYC 1 cut(s) 77
BssT1I CCWWGG 2 cut(s) 392, 746
Bst2UI CCWGG 2 cut(s) 150, 599
Bst4CI ACNGT 4 cut(s) 193, 657, 842, 874
Bst6I CTCTTC 4 cut(s) 116, 462, 687, 1065
BstACI GRCGYC 1 cut(s) 77
BstAPI GCANNNNNTGC 3 cut(s) 742, 865, 1046
BstBI TTCGAA 1 cut(s) 1131
BstC8I GCNNGC 2 cut(s) 205, 261
BstDEI CTNAG 2 cut(s) 617, 1010
BstDSI CCRYGG 1 cut(s) 873
BstENI CCTNNNNNAGG 2 cut(s) 268, 620
BstF5I GGATG 4 cut(s) 131, 349, 508, 959
BstFNI CGCG 1 cut(s) 45
BstH2I RGCGCY 1 cut(s) 80
BstHHI GCGC 7 cut(s) 47, 59, 79, 209, 525, 774, 1040
BstKTI GATC 5 cut(s) 615, 682, 733, 826, 983
BstMBI GATC 5 cut(s) 612, 679, 730, 823, 980
BstMWI GCNNNNNNNGC 8 cut(s) 83, 503, 512, 695, 742, 865, 1046, 1055
BstNI CCWGG 2 cut(s) 150, 599
BstNSI RCATGY 1 cut(s) 796
BstSCI CCNGG 2 cut(s) 148, 597
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 3 cut(s) 110, 1061, 1099
BstX2I RGATCY 3 cut(s) 612, 823, 980
BstYI RGATCY 3 cut(s) 612, 823, 980
BtgI CCRYGG 1 cut(s) 873
BtsCI GGATG 4 cut(s) 131, 349, 508, 959
BtsIMutI CAGTG 1 cut(s) 1116
Cac8I GCNNGC 2 cut(s) 205, 261
CaiI CAGNNNCTG 1 cut(s) 1112
CfoI GCGC 7 cut(s) 47, 59, 79, 209, 525, 774, 1040
Cfr13I GGNCC 3 cut(s) 218, 274, 595
Csp6I GTAC 3 cut(s) 184, 649, 954
CviAII CATG 3 cut(s) 701, 793, 1136
CviQI GTAC 3 cut(s) 184, 649, 954
DdeI CTNAG 2 cut(s) 617, 1010
DinI GGCGCC 1 cut(s) 78
DpnI GATC 5 cut(s) 614, 681, 732, 825, 982
DpnII GATC 5 cut(s) 612, 679, 730, 823, 980
DraIII CACNNNGTG 1 cut(s) 865
Eam1104I CTCTTC 4 cut(s) 116, 462, 687, 1065
EarI CTCTTC 4 cut(s) 116, 462, 687, 1065
Ecl136II GAGCTC 1 cut(s) 497
Eco130I CCWWGG 2 cut(s) 392, 746
Eco24I GRGCYC 1 cut(s) 499
Eco47I GGWCC 3 cut(s) 218, 274, 595
Eco53kI GAGCTC 1 cut(s) 497
EcoICRI GAGCTC 1 cut(s) 497
EcoNI CCTNNNNNAGG 2 cut(s) 268, 620
EcoRII CCWGG 2 cut(s) 148, 597
EcoT14I CCWWGG 2 cut(s) 392, 746
EcoT38I GRGCYC 1 cut(s) 499
EgeI GGCGCC 1 cut(s) 78
EheI GGCGCC 1 cut(s) 78
ErhI CCWWGG 2 cut(s) 392, 746
FaeI CATG 3 cut(s) 704, 796, 1139
FalI AAGNNNNNCTT 4 cut(s) 248, 280, 967, 999
FaqI GGGAC 2 cut(s) 639, 658
FatI CATG 3 cut(s) 700, 792, 1135
FauI CCCGC 1 cut(s) 268
Fnu4HI GCNGC 3 cut(s) 99, 1050, 1113
FokI GGATG 4 cut(s) 138, 356, 515, 946
FriOI GRGCYC 1 cut(s) 499
Fsp4HI GCNGC 3 cut(s) 99, 1050, 1113
FspAI RTGCGCAY 1 cut(s) 773
FspBI CTAG 3 cut(s) 27, 393, 561
FspI TGCGCA 1 cut(s) 773
GlaI GCGC 7 cut(s) 46, 58, 78, 208, 524, 773, 1039
GluI GCNGC 3 cut(s) 99, 1050, 1113
GsuI CTGGAG 1 cut(s) 848
HaeII RGCGCY 1 cut(s) 80
HapII CCGG 2 cut(s) 784, 851
HhaI GCGC 7 cut(s) 47, 59, 79, 209, 525, 774, 1040
Hin1I GRCGYC 1 cut(s) 77
Hin1II CATG 3 cut(s) 704, 796, 1139
Hin6I GCGC 7 cut(s) 45, 57, 77, 207, 523, 772, 1038
HinP1I GCGC 7 cut(s) 45, 57, 77, 207, 523, 772, 1038
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 4 cut(s) 305, 362, 1015, 1103
HpaII CCGG 2 cut(s) 784, 851
HphI GGTGA 3 cut(s) 155, 613, 1088
Hpy166II GTNNAC 3 cut(s) 244, 451, 956
Hpy188I TCNGA 4 cut(s) 39, 361, 964, 1108
Hpy188III TCNNGA 8 cut(s) 461, 500, 566, 784, 827, 851, 1019, 1088
Hpy8I GTNNAC 3 cut(s) 244, 451, 956
HpyAV CCTTC 3 cut(s) 367, 421, 1028
HpyCH4III ACNGT 4 cut(s) 193, 657, 842, 874
HpyCH4IV ACGT 2 cut(s) 325, 647
HpyCH4V TGCA 3 cut(s) 736, 868, 1049
HpyF10VI GCNNNNNNNGC 8 cut(s) 83, 503, 512, 695, 742, 865, 1046, 1055
HpyF3I CTNAG 2 cut(s) 617, 1010
HpySE526I ACGT 2 cut(s) 325, 647
Hsp92I GRCGYC 1 cut(s) 77
Hsp92II CATG 3 cut(s) 704, 796, 1139
HspAI GCGC 7 cut(s) 45, 57, 77, 207, 523, 772, 1038
KasI GGCGCC 1 cut(s) 76
Kpn2I TCCGGA 2 cut(s) 783, 850
Kzo9I GATC 5 cut(s) 612, 679, 730, 823, 980
LguI GCTCTTC 1 cut(s) 1065
LmnI GCTCC 3 cut(s) 494, 520, 1139
Lsp1109I GCAGC 3 cut(s) 110, 1061, 1099
LweI GCATC 5 cut(s) 493, 595, 759, 871, 1036
MaeI CTAG 3 cut(s) 27, 393, 561
MaeII ACGT 2 cut(s) 325, 647
MaeIII GTNAC 3 cut(s) 128, 795, 925
MalI GATC 5 cut(s) 614, 681, 732, 825, 982
MboI GATC 5 cut(s) 612, 679, 730, 823, 980
MflI RGATCY 3 cut(s) 612, 823, 980
MhlI GDGCHC 1 cut(s) 499
MluCI AATT 6 cut(s) 21, 136, 405, 526, 752, 1127
Mly113I GGCGCC 1 cut(s) 77
MroI TCCGGA 2 cut(s) 783, 850
MseI TTAA 2 cut(s) 269, 810
MslI CAYNNNNRTG 1 cut(s) 168
MspI CCGG 2 cut(s) 784, 851
MspR9I CCNGG 2 cut(s) 150, 599
Mva1269I GAATGC 2 cut(s) 736, 906
MvaI CCWGG 2 cut(s) 150, 599
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 8 cut(s) 83, 503, 512, 695, 742, 865, 1046, 1055
NarI GGCGCC 1 cut(s) 77
NdeII GATC 5 cut(s) 612, 679, 730, 823, 980
NlaIII CATG 3 cut(s) 704, 796, 1139
NlaIV GGNNCC 3 cut(s) 78, 275, 614
NmuCI GTSAC 2 cut(s) 128, 925
NsbI TGCGCA 1 cut(s) 773
NspI RCATGY 1 cut(s) 796
NspV TTCGAA 1 cut(s) 1131
PciI ACATGT 1 cut(s) 792
PciSI GCTCTTC 1 cut(s) 1065
PcsI WCGNNNNNNNCGW 1 cut(s) 644
PctI GAATGC 2 cut(s) 736, 906
PfeI GAWTC 4 cut(s) 305, 362, 1015, 1103
Pfl23II CGTACG 1 cut(s) 648
PkrI GCNGC 3 cut(s) 100, 1051, 1114
PluTI GGCGCC 1 cut(s) 80
PscI ACATGT 1 cut(s) 792
Psp124BI GAGCTC 1 cut(s) 499
Psp6I CCWGG 2 cut(s) 148, 597
PspGI CCWGG 2 cut(s) 148, 597
PspLI CGTACG 1 cut(s) 648
PspN4I GGNNCC 3 cut(s) 78, 275, 614
PspPI GGNCC 3 cut(s) 218, 274, 595
PstNI CAGNNNCTG 1 cut(s) 1112
PsuI RGATCY 3 cut(s) 612, 823, 980
RsaI GTAC 3 cut(s) 185, 650, 955
RsaNI GTAC 3 cut(s) 184, 649, 954
RseI CAYNNNNRTG 1 cut(s) 168
SacI GAGCTC 1 cut(s) 499
SapI GCTCTTC 1 cut(s) 1065
SaqAI TTAA 2 cut(s) 269, 810
SatI GCNGC 3 cut(s) 99, 1050, 1113
Sau3AI GATC 5 cut(s) 612, 679, 730, 823, 980
Sau96I GGNCC 3 cut(s) 218, 274, 595
ScrFI CCNGG 2 cut(s) 150, 599
SduI GDGCHC 1 cut(s) 499
SfaNI GCATC 5 cut(s) 493, 595, 759, 871, 1036
SfoI GGCGCC 1 cut(s) 78
SfuI TTCGAA 1 cut(s) 1131
SinI GGWCC 3 cut(s) 218, 274, 595
SmiMI CAYNNNNRTG 1 cut(s) 168
Sse9I AATT 6 cut(s) 21, 136, 405, 526, 752, 1127
SsiI CCGC 2 cut(s) 5, 261
SspDI GGCGCC 1 cut(s) 76
SspMI CTAG 3 cut(s) 27, 393, 561
SstI GAGCTC 1 cut(s) 499
StyD4I CCNGG 2 cut(s) 148, 597
StyI CCWWGG 2 cut(s) 392, 746
TaaI ACNGT 4 cut(s) 193, 657, 842, 874
TaiI ACGT 2 cut(s) 328, 650
TaqI TCGA 3 cut(s) 589, 986, 1131
TasI AATT 6 cut(s) 21, 136, 405, 526, 752, 1127
TatI WGTACW 1 cut(s) 183
TfiI GAWTC 4 cut(s) 305, 362, 1015, 1103
Tru1I TTAA 2 cut(s) 269, 810
Tru9I TTAA 2 cut(s) 269, 810
TscAI CASTG 1 cut(s) 1123
TseFI GTSAC 2 cut(s) 128, 925
TseI GCWGC 3 cut(s) 98, 1049, 1112
Tsp45I GTSAC 2 cut(s) 128, 925
TspDTI ATGAA 4 cut(s) 103, 215, 303, 354
TspGWI ACGGA 1 cut(s) 666
TspRI CASTG 1 cut(s) 1123
VpaK11BI GGWCC 3 cut(s) 218, 274, 595
XagI CCTNNNNNAGG 2 cut(s) 268, 620
XceI RCATGY 1 cut(s) 796
XcmI CCANNNNNNNNNTGG 1 cut(s) 947
XmaJI CCTAGG 1 cut(s) 392
XspI CTAG 3 cut(s) 27, 393, 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.