Prupe.5G075000_v2.0.a1

Pentatricopeptide repeat-containing protein At4g18975

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0009535
Physical Location & Seq
Reverse (-)
8907392 .. 8910376
2985 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G075000.1

Sequence Viewer

Length: 918 bp
ATGCCAAGAGCAAGAATCAAACTTGGGCTCATCAGTTATAGCACTCTCTCTCGTGTGCTTTGTCCATGGCTTTCTCCAGCGATACTCTCCCTCAATTGCTCGTCTGCTGTCGGCGGCCAGGTTGGCGGATTAACTCAGCTTGGGGTTATCAGGGCCCAAATTCTGAATTCTACTTACAGTACAGTGGTGCAAGCTCAAGTATCTAACCAAAGAACTGCTACAGCTATGGTTTCATTGGAGGATCAACACAACCACCAAAGTAACAGTTACTATCCAGAGAAAAATGCTGGAGGCGAGAAAAGGGGCCAAATTGGATGGAATGTTTCTAGAAAGGATAAAGTTAACTTTCTTGTAAGAACTCTTCTTGATCTCAATAACAGTAAGGAGGCTGTTTATGGTACTCTTGATGGATGGGTTGCTTGGGAGCAAGAGTTTCCCATTGGAAAAATTAGGATGGCATTGACTTCTCTTGAGAAGGAACAGCAGTGGCATAGAATTGTTCAGGTAATTAAATGGATGCTAAGCAAGGGACAGGGAAACACAATGGGAACATATGGGCAACTAATACGAGCTTTAGATATGGACCAAAGACCAGAAGAAGCACACAAGTTTTGGGACAAGAAGATTGGCATTGATCTGCATTCAGTTCCGTGGCAGTTATGCAAAAGTATGATAGGTATATACTACCGAAACAACATGTTGGAGAGTCTCGTAAAGCTTTTTGAGGGCTTGGAAGCTTTTGATCGCAAACCTCCCGTGAAATCAATAGTCCAGAGAGTGGCAGATGCATATGAGATGTTAGGCAGGATTGAAGAAAAAGAGAGGGTGTTGCAGAAGTACAACCATCTTTTCACAGAAAATGCATCACTCAAGAAATCTAGAGAGGCCTCGGCTAAGAAAAAGAAGAAACTTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

306

Amino Acids

34.64

Weight (kDa)

9.67

Isoelectric Point (pI)

29.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009535)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04590 AT1G04590
fragaria_vesca FvH4_5g00240 FvH4_5g00240 FvH4_5g00240 FvH4_5g00240 FvH4_5g00240 FvH4_5g00240 FvH4_5g00240
malus_domestica MD06G1063200.v1.1
prunus_persica Prupe.5G075000_v2.0.a1
pyrus_communis pycom06g06020
rosa_chinensis RchiOBHm_Chr7g0202441
rosa_laevigata RLG00000003603
rosa_multiflora Rmu_sc0031703.1_g000002
rosa_roxburghii Rroxscaffold_3G00254610
rosa_rugosa Rorug07G0070600
rosa_samantha Rh7AG198000 Rh7BG199300 Rh7CG209100 Rh7DG204900
rosa_wichuraiana Rw7G017370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 778
AciI CCGC 2 cut(s) 114, 126
AclWI GGATC 1 cut(s) 249
AcoI YGGCCR 1 cut(s) 115
AcsI RAATTY 2 cut(s) 159, 166
AfaI GTAC 3 cut(s) 181, 400, 839
AfiI CCNNNNNNNGG 1 cut(s) 778
AflIII ACRYGT 1 cut(s) 696
AgsI TTSAA 1 cut(s) 812
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 6 cut(s) 139, 194, 224, 572, 718, 737
AluI AGCT 6 cut(s) 139, 194, 224, 572, 718, 737
Alw26I GTCTC 1 cut(s) 713
AlwI GGATC 1 cut(s) 249
AoxI GGCC 4 cut(s) 115, 153, 304, 885
ApaI GGGCCC 1 cut(s) 157
ApoI RAATTY 2 cut(s) 159, 166
AspS9I GGNCC 4 cut(s) 153, 154, 304, 583
AvaII GGWCC 1 cut(s) 583
BaeGI GKGCMC 1 cut(s) 157
BanII GRGCYC 2 cut(s) 30, 157
BarI GAAGNNNNNNTAC 2 cut(s) 345, 377
BauI CACGAG 1 cut(s) 51
BccI CCATC 5 cut(s) 309, 401, 405, 448, 852
BciT130I CCWGG 1 cut(s) 119
BcoDI GTCTC 1 cut(s) 713
BfaI CTAG 2 cut(s) 327, 879
BfmI CTRYAG 1 cut(s) 219
BglI GCCNNNNNGGC 1 cut(s) 123
BisI GCNGC 1 cut(s) 115
BlpI GCTNAGC 1 cut(s) 521
BlsI GCNGC 1 cut(s) 116
Bme1390I CCNGG 1 cut(s) 119
Bme18I GGWCC 1 cut(s) 583
BmgT120I GGNCC 4 cut(s) 153, 154, 304, 583
BmiI GGNNCC 2 cut(s) 155, 305
BmrFI CCNGG 1 cut(s) 119
BmsI GCATC 3 cut(s) 507, 775, 872
BpmI CTGGAG 2 cut(s) 60, 309
Bpu1102I GCTNAGC 1 cut(s) 521
BpuEI CTTGAG 3 cut(s) 180, 491, 854
BsaJI CCNNGG 3 cut(s) 65, 650, 888
BsaXI ACNNNNNCTCC 2 cut(s) 416, 446
Bsc4I CCNNNNNNNGG 1 cut(s) 778
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 3 cut(s) 65, 650, 888
BseGI GGATG 4 cut(s) 320, 416, 459, 522
BseLI CCNNNNNNNGG 1 cut(s) 778
BseMII CTCAG 1 cut(s) 149
BseSI GKGCMC 1 cut(s) 157
BshFI GGCC 4 cut(s) 117, 155, 306, 887
BslFI GGGAC 2 cut(s) 543, 629
BslI CCNNNNNNNGG 1 cut(s) 778
BsmAI GTCTC 1 cut(s) 713
BsmFI GGGAC 2 cut(s) 543, 629
BsmI GAATGC 1 cut(s) 640
BsnI GGCC 4 cut(s) 117, 155, 306, 887
Bsp120I GGGCCC 1 cut(s) 153
Bsp1286I GDGCHC 2 cut(s) 30, 157
Bsp143I GATC 4 cut(s) 241, 367, 634, 742
Bsp1720I GCTNAGC 1 cut(s) 521
Bsp19I CCATGG 1 cut(s) 65
BspACI CCGC 2 cut(s) 114, 126
BspANI GGCC 4 cut(s) 117, 155, 306, 887
BspCNI CTCAG 1 cut(s) 148
BspLI GGNNCC 2 cut(s) 155, 305
BspPI GGATC 1 cut(s) 249
BssECI CCNNGG 3 cut(s) 65, 650, 888
BssMI GATC 4 cut(s) 241, 367, 634, 742
BssSI CACGAG 1 cut(s) 51
BssT1I CCWWGG 1 cut(s) 65
Bst2BI CACGAG 1 cut(s) 51
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 4 cut(s) 179, 184, 266, 380
Bst6I CTCTTC 1 cut(s) 366
BstC8I GCNNGC 1 cut(s) 192
BstDEI CTNAG 3 cut(s) 135, 521, 894
BstDSI CCRYGG 2 cut(s) 65, 650
BstF5I GGATG 4 cut(s) 320, 416, 459, 522
BstKTI GATC 4 cut(s) 244, 370, 637, 745
BstMAI GTCTC 1 cut(s) 713
BstMBI GATC 4 cut(s) 241, 367, 634, 742
BstMWI GCNNNNNNNGC 1 cut(s) 123
BstNI CCWGG 1 cut(s) 119
BstNSI RCATGY 1 cut(s) 700
BstSCI CCNGG 1 cut(s) 117
BstSFI CTRYAG 1 cut(s) 219
BstSLI GKGCMC 1 cut(s) 157
BsuRI GGCC 4 cut(s) 117, 155, 306, 887
BtgI CCRYGG 2 cut(s) 65, 650
BtsCI GGATG 4 cut(s) 320, 416, 459, 522
BtsI GCAGTG 1 cut(s) 491
BtsIMutI CAGTG 2 cut(s) 189, 491
Cac8I GCNNGC 1 cut(s) 192
Cfr13I GGNCC 4 cut(s) 153, 154, 304, 583
Csp6I GTAC 3 cut(s) 180, 399, 838
CviAII CATG 2 cut(s) 66, 697
CviQI GTAC 3 cut(s) 180, 399, 838
DdeI CTNAG 3 cut(s) 135, 521, 894
DpnI GATC 4 cut(s) 243, 369, 636, 744
DpnII GATC 4 cut(s) 241, 367, 634, 742
EaeI YGGCCR 1 cut(s) 115
Eam1104I CTCTTC 1 cut(s) 366
EarI CTCTTC 1 cut(s) 366
EciI GGCGGA 1 cut(s) 141
Eco130I CCWWGG 1 cut(s) 65
Eco147I AGGCCT 1 cut(s) 887
Eco24I GRGCYC 2 cut(s) 30, 157
Eco47I GGWCC 1 cut(s) 583
EcoO109I RGGNCCY 1 cut(s) 153
EcoRI GAATTC 1 cut(s) 166
EcoRII CCWGG 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 65
EcoT22I ATGCAT 2 cut(s) 790, 865
EcoT38I GRGCYC 2 cut(s) 30, 157
ErhI CCWWGG 1 cut(s) 65
FaeI CATG 2 cut(s) 69, 700
FaqI GGGAC 2 cut(s) 543, 629
FatI CATG 2 cut(s) 65, 696
FauNDI CATATG 2 cut(s) 553, 790
Fnu4HI GCNGC 1 cut(s) 115
FokI GGATG 4 cut(s) 327, 423, 466, 529
FriOI GRGCYC 2 cut(s) 30, 157
Fsp4HI GCNGC 1 cut(s) 115
FspBI CTAG 2 cut(s) 327, 879
GluI GCNGC 1 cut(s) 115
GsuI CTGGAG 2 cut(s) 60, 309
HaeIII GGCC 4 cut(s) 117, 155, 306, 887
Hin1II CATG 2 cut(s) 69, 700
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HindIII AAGCTT 2 cut(s) 716, 735
HinfI GANTC 2 cut(s) 15, 706
HpaI GTTAAC 1 cut(s) 343
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 1 cut(s) 165
Hpy188III TCNNGA 8 cut(s) 275, 327, 365, 404, 470, 772, 871, 879
Hpy8I GTNNAC 1 cut(s) 343
HpyAV CCTTC 1 cut(s) 469
HpyCH4III ACNGT 4 cut(s) 179, 184, 266, 380
HpyCH4V TGCA 6 cut(s) 190, 640, 663, 788, 832, 863
HpyF10VI GCNNNNNNNGC 1 cut(s) 123
HpyF3I CTNAG 3 cut(s) 135, 521, 894
Hsp92II CATG 2 cut(s) 69, 700
KspAI GTTAAC 1 cut(s) 343
Kzo9I GATC 4 cut(s) 241, 367, 634, 742
LmnI GCTCC 1 cut(s) 424
LweI GCATC 3 cut(s) 507, 775, 872
MaeI CTAG 2 cut(s) 327, 879
MaeIII GTNAC 2 cut(s) 260, 266
MalI GATC 4 cut(s) 243, 369, 636, 744
MboI GATC 4 cut(s) 241, 367, 634, 742
MboII GAAGA 5 cut(s) 353, 608, 634, 824, 916
MfeI CAATTG 1 cut(s) 94
MhlI GDGCHC 2 cut(s) 30, 157
MluCI AATT 7 cut(s) 94, 159, 166, 309, 447, 495, 507
MlyI GAGTC 1 cut(s) 715
MmeI TCCRAC 1 cut(s) 681
MnlI CCTC 9 cut(s) 101, 232, 284, 379, 718, 762, 816, 877, 898
Mph1103I ATGCAT 2 cut(s) 790, 865
MseI TTAA 3 cut(s) 131, 342, 510
MspR9I CCNGG 1 cut(s) 119
MunI CAATTG 1 cut(s) 94
Mva1269I GAATGC 1 cut(s) 640
MvaI CCWGG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 123
NcoI CCATGG 1 cut(s) 65
NdeI CATATG 2 cut(s) 553, 790
NdeII GATC 4 cut(s) 241, 367, 634, 742
NlaIII CATG 2 cut(s) 69, 700
NlaIV GGNNCC 2 cut(s) 155, 305
NmeAIII GCCGAG 1 cut(s) 869
NsiI ATGCAT 2 cut(s) 790, 865
NspI RCATGY 1 cut(s) 700
PceI AGGCCT 1 cut(s) 887
PciI ACATGT 1 cut(s) 696
PctI GAATGC 1 cut(s) 640
PfeI GAWTC 1 cut(s) 15
PflMI CCANNNNNTGG 1 cut(s) 778
PkrI GCNGC 1 cut(s) 116
PleI GAGTC 1 cut(s) 714
PpsI GAGTC 1 cut(s) 714
PscI ACATGT 1 cut(s) 696
Psp6I CCWGG 1 cut(s) 117
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 2 cut(s) 155, 305
PspOMI GGGCCC 1 cut(s) 153
PspPI GGNCC 4 cut(s) 153, 154, 304, 583
RsaI GTAC 3 cut(s) 181, 400, 839
RsaNI GTAC 3 cut(s) 180, 399, 838
SaqAI TTAA 3 cut(s) 131, 342, 510
SatI GCNGC 1 cut(s) 115
Sau3AI GATC 4 cut(s) 241, 367, 634, 742
Sau96I GGNCC 4 cut(s) 153, 154, 304, 583
SchI GAGTC 1 cut(s) 715
ScrFI CCNGG 1 cut(s) 119
SduI GDGCHC 2 cut(s) 30, 157
SfaNI GCATC 3 cut(s) 507, 775, 872
SfcI CTRYAG 1 cut(s) 219
SinI GGWCC 1 cut(s) 583
SmlI CTYRAG 3 cut(s) 195, 470, 869
SmoI CTYRAG 3 cut(s) 195, 470, 869
Sse9I AATT 7 cut(s) 94, 159, 166, 309, 447, 495, 507
SseBI AGGCCT 1 cut(s) 887
SsiI CCGC 2 cut(s) 114, 126
SspMI CTAG 2 cut(s) 327, 879
StuI AGGCCT 1 cut(s) 887
StyD4I CCNGG 1 cut(s) 117
StyI CCWWGG 1 cut(s) 65
TaaI ACNGT 4 cut(s) 179, 184, 266, 380
TasI AATT 7 cut(s) 94, 159, 166, 309, 447, 495, 507
TatI WGTACW 2 cut(s) 179, 837
TauI GCSGC 1 cut(s) 117
TfiI GAWTC 1 cut(s) 15
Tru1I TTAA 3 cut(s) 131, 342, 510
Tru9I TTAA 3 cut(s) 131, 342, 510
TscAI CASTG 2 cut(s) 189, 491
TspDTI ATGAA 1 cut(s) 222
TspGWI ACGGA 1 cut(s) 639
TspRI CASTG 2 cut(s) 189, 491
Van91I CCANNNNNTGG 1 cut(s) 778
VpaK11BI GGWCC 1 cut(s) 583
XapI RAATTY 2 cut(s) 159, 166
XbaI TCTAGA 2 cut(s) 326, 878
XceI RCATGY 1 cut(s) 700
XspI CTAG 2 cut(s) 327, 879
Zsp2I ATGCAT 2 cut(s) 790, 865
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.