FvH4_5g00240

Pentatricopeptide repeat-containing protein At4g18975

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0009535
Physical Location & Seq
Reverse (-)
157749 .. 161830
4082 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g00240.t5

Sequence Viewer

Length: 879 bp
ATGTCTTTGTGTGTTTTAGCTTTTAAGATTGGCGCCACTCAGTTTGTACCAATGTGGAAATCACCTCCCATGTCCTATCTGGTTGGCCGTTTAACTCAGCTTGGAGTTATTAGGGCCCAAGTTCTGACTTCTTCATACAGCACGGCGGCACATGCTCAACTATATCACCATACAACAGGAAAGGCTGCTGTGTCATTGGAGGATCAACACAGCAACCAAGGGATCCGTCATTTTCCTGAGAAAAATGCTGGAGGCGAAAACAGGAACCAAATTGGATGGAATGTTTCTAGAAAGGATAAGGTCAACTTTCTTGTCAAGACACTTCTTGATCTCAATGATAGTAAGGAGGCTGTTTATGGTACTCTTGATGGATGGGTTGCATGGGAGCAAGACTTTCCTATTGGAAAACTTAGGATGGCATTGATTGCTCTTGAGAAGGAACAGCAGTGGCACCGAATTATTCAGGTAATTAAATGGATGCTAAGCAAGGGACAGGGAACCACCATGGGAACATATGGGCAGCTAATACATGCTTTAGATATGGACCAAAGACCAGAAGAAGCACACAAGTTCTGGAAGAAGAAGATTGGCATGGATCTGCATGCAGTTCCATGGCAGTTATGCAAAAGCATGATGTCTATATACTATCGAAACAATATGTTGGAGAATCTCATAAAGCTTTTTGAGGGCCTGGAAGCTTTTGATCGTAAACCTCCACAGAAATCTATAGTCAGGAAAGTGGCGGATGCATATGAGATATTAGGCAGGCTTGAAAAAAAAGAGAGGGTGTTGGAGAAGTACAATTATCTCTTCACTGAGGATCAATCACGGAAGAAACCTAGAAAGGCCTTGTCTAAGGAGAAGAAGAAACTAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

293

Amino Acids

33.68

Weight (kDa)

9.68

Isoelectric Point (pI)

27.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009535)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04590 AT1G04590
fragaria_vesca FvH4_5g00240 FvH4_5g00240 FvH4_5g00240 FvH4_5g00240 FvH4_5g00240 FvH4_5g00240 FvH4_5g00240
malus_domestica MD06G1063200.v1.1
prunus_persica Prupe.5G075000_v2.0.a1
pyrus_communis pycom06g06020
rosa_chinensis RchiOBHm_Chr7g0202441
rosa_laevigata RLG00000003603
rosa_multiflora Rmu_sc0031703.1_g000002
rosa_roxburghii Rroxscaffold_3G00254610
rosa_rugosa Rorug07G0070600
rosa_samantha Rh7AG198000 Rh7BG199300 Rh7CG209100 Rh7DG204900
rosa_wichuraiana Rw7G017370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 32, 450
AciI CCGC 2 cut(s) 146, 743
AclWI GGATC 5 cut(s) 210, 217, 230, 603, 828
AcoI YGGCCR 1 cut(s) 85
AcyI GRCGYC 1 cut(s) 33
AfaI GTAC 3 cut(s) 48, 361, 800
AgsI TTSAA 1 cut(s) 773
AjnI CCWGG 1 cut(s) 690
AluBI AGCT 5 cut(s) 20, 100, 523, 679, 698
AluI AGCT 5 cut(s) 20, 100, 523, 679, 698
AlwI GGATC 5 cut(s) 210, 217, 230, 603, 828
AoxI GGCC 4 cut(s) 85, 114, 688, 846
ApaI GGGCCC 1 cut(s) 118
ApeKI GCWGC 2 cut(s) 185, 520
AspLEI GCGC 1 cut(s) 35
AspS9I GGNCC 4 cut(s) 114, 115, 544, 688
AsuHPI GGTGA 2 cut(s) 54, 158
AvaII GGWCC 1 cut(s) 544
BaeGI GKGCMC 1 cut(s) 118
BamHI GGATCC 1 cut(s) 222
BanI GGYRCC 2 cut(s) 32, 450
BanII GRGCYC 1 cut(s) 118
BbvI GCAGC 2 cut(s) 172, 532
BccI CCATC 4 cut(s) 270, 362, 366, 409
BceAI ACGGC 2 cut(s) 72, 159
BciT130I CCWGG 1 cut(s) 692
BfaI CTAG 3 cut(s) 288, 840, 872
BfmI CTRYAG 1 cut(s) 726
BfoI RGCGCY 1 cut(s) 36
BisI GCNGC 3 cut(s) 147, 186, 521
BlpI GCTNAGC 1 cut(s) 482
BlsI GCNGC 3 cut(s) 148, 187, 522
Bme1390I CCNGG 1 cut(s) 692
Bme18I GGWCC 1 cut(s) 544
BmgT120I GGNCC 4 cut(s) 114, 115, 544, 688
BmiI GGNNCC 6 cut(s) 34, 116, 224, 266, 452, 499
BmrFI CCNGG 1 cut(s) 692
BmsI GCATC 2 cut(s) 468, 736
BpmI CTGGAG 1 cut(s) 270
Bpu1102I GCTNAGC 1 cut(s) 482
BpuEI CTTGAG 1 cut(s) 452
BsaHI GRCGYC 1 cut(s) 33
BsaJI CCNNGG 3 cut(s) 217, 504, 611
BseBI CCWGG 1 cut(s) 692
BseDI CCNNGG 3 cut(s) 217, 504, 611
BseGI GGATG 5 cut(s) 281, 377, 420, 483, 751
BseMII CTCAG 4 cut(s) 53, 110, 228, 807
BseSI GKGCMC 1 cut(s) 118
BseXI GCAGC 2 cut(s) 172, 532
BshFI GGCC 4 cut(s) 87, 116, 690, 848
BshNI GGYRCC 2 cut(s) 32, 450
BslFI GGGAC 1 cut(s) 504
BsmFI GGGAC 1 cut(s) 504
BsnI GGCC 4 cut(s) 87, 116, 690, 848
Bsp120I GGGCCC 1 cut(s) 114
Bsp1286I GDGCHC 1 cut(s) 118
Bsp143I GATC 6 cut(s) 202, 222, 328, 595, 703, 820
Bsp1720I GCTNAGC 1 cut(s) 482
Bsp19I CCATGG 2 cut(s) 504, 611
BspACI CCGC 2 cut(s) 146, 743
BspANI GGCC 4 cut(s) 87, 116, 690, 848
BspCNI CTCAG 4 cut(s) 52, 109, 229, 808
BspLI GGNNCC 6 cut(s) 34, 116, 224, 266, 452, 499
BspPI GGATC 5 cut(s) 210, 217, 230, 603, 828
BspT107I GGYRCC 2 cut(s) 32, 450
BssECI CCNNGG 3 cut(s) 217, 504, 611
BssMI GATC 6 cut(s) 202, 222, 328, 595, 703, 820
BssNI GRCGYC 1 cut(s) 33
BssT1I CCWWGG 3 cut(s) 217, 504, 611
Bst2UI CCWGG 1 cut(s) 692
Bst6I CTCTTC 1 cut(s) 815
BstACI GRCGYC 1 cut(s) 33
BstAPI GCANNNNNTGC 1 cut(s) 425
BstC8I GCNNGC 2 cut(s) 603, 767
BstDEI CTNAG 7 cut(s) 39, 96, 237, 410, 482, 816, 855
BstDSI CCRYGG 2 cut(s) 504, 611
BstF5I GGATG 5 cut(s) 281, 377, 420, 483, 751
BstH2I RGCGCY 1 cut(s) 36
BstHHI GCGC 1 cut(s) 35
BstKTI GATC 6 cut(s) 205, 225, 331, 598, 706, 823
BstMBI GATC 6 cut(s) 202, 222, 328, 595, 703, 820
BstMWI GCNNNNNNNGC 2 cut(s) 152, 425
BstNI CCWGG 1 cut(s) 692
BstNSI RCATGY 3 cut(s) 155, 533, 605
BstSCI CCNGG 1 cut(s) 690
BstSFI CTRYAG 1 cut(s) 726
BstSLI GKGCMC 1 cut(s) 118
BstV1I GCAGC 2 cut(s) 172, 532
BstX2I RGATCY 2 cut(s) 222, 595
BstYI RGATCY 2 cut(s) 222, 595
BsuRI GGCC 4 cut(s) 87, 116, 690, 848
BtgI CCRYGG 2 cut(s) 504, 611
BtsCI GGATG 5 cut(s) 281, 377, 420, 483, 751
BtsI GCAGTG 1 cut(s) 452
BtsIMutI CAGTG 2 cut(s) 452, 813
Cac8I GCNNGC 2 cut(s) 603, 767
CfoI GCGC 1 cut(s) 35
Cfr13I GGNCC 4 cut(s) 114, 115, 544, 688
Csp6I GTAC 3 cut(s) 47, 360, 799
CspCI CAANNNNNGTGG 2 cut(s) 25, 60
CviAII CATG 9 cut(s) 70, 152, 381, 505, 530, 592, 602, 612, 631
CviQI GTAC 3 cut(s) 47, 360, 799
DdeI CTNAG 7 cut(s) 39, 96, 237, 410, 482, 816, 855
DinI GGCGCC 1 cut(s) 34
DpnI GATC 6 cut(s) 204, 224, 330, 597, 705, 822
DpnII GATC 6 cut(s) 202, 222, 328, 595, 703, 820
EaeI YGGCCR 1 cut(s) 85
Eam1104I CTCTTC 1 cut(s) 815
EarI CTCTTC 1 cut(s) 815
EciI GGCGGA 1 cut(s) 758
Eco130I CCWWGG 3 cut(s) 217, 504, 611
Eco147I AGGCCT 1 cut(s) 848
Eco24I GRGCYC 1 cut(s) 118
Eco47I GGWCC 1 cut(s) 544
EcoO109I RGGNCCY 2 cut(s) 114, 688
EcoRII CCWGG 1 cut(s) 690
EcoT14I CCWWGG 3 cut(s) 217, 504, 611
EcoT22I ATGCAT 1 cut(s) 751
EcoT38I GRGCYC 1 cut(s) 118
EgeI GGCGCC 1 cut(s) 34
EheI GGCGCC 1 cut(s) 34
ErhI CCWWGG 3 cut(s) 217, 504, 611
FaeI CATG 9 cut(s) 73, 155, 384, 508, 533, 595, 605, 615, 634
FalI AAGNNNNNCTT 2 cut(s) 290, 322
FaqI GGGAC 1 cut(s) 504
FatI CATG 9 cut(s) 69, 151, 380, 504, 529, 591, 601, 611, 630
FauNDI CATATG 2 cut(s) 514, 751
Fnu4HI GCNGC 3 cut(s) 147, 186, 521
FokI GGATG 5 cut(s) 288, 384, 427, 490, 758
FriOI GRGCYC 1 cut(s) 118
Fsp4HI GCNGC 3 cut(s) 147, 186, 521
FspBI CTAG 3 cut(s) 288, 840, 872
GlaI GCGC 1 cut(s) 34
GluI GCNGC 3 cut(s) 147, 186, 521
GsuI CTGGAG 1 cut(s) 270
HaeII RGCGCY 1 cut(s) 36
HaeIII GGCC 4 cut(s) 87, 116, 690, 848
HhaI GCGC 1 cut(s) 35
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 9 cut(s) 73, 155, 384, 508, 533, 595, 605, 615, 634
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HindIII AAGCTT 2 cut(s) 677, 696
HinfI GANTC 1 cut(s) 667
HphI GGTGA 2 cut(s) 54, 158
Hpy166II GTNNAC 2 cut(s) 304, 710
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 8 cut(s) 236, 288, 316, 326, 365, 431, 574, 733
Hpy8I GTNNAC 2 cut(s) 304, 710
HpyAV CCTTC 1 cut(s) 430
HpyCH4V TGCA 5 cut(s) 380, 601, 605, 624, 749
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 425
HpyF3I CTNAG 7 cut(s) 39, 96, 237, 410, 482, 816, 855
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 9 cut(s) 73, 155, 384, 508, 533, 595, 605, 615, 634
HspAI GCGC 1 cut(s) 33
KasI GGCGCC 1 cut(s) 32
Kzo9I GATC 6 cut(s) 202, 222, 328, 595, 703, 820
LmnI GCTCC 1 cut(s) 385
Lsp1109I GCAGC 2 cut(s) 172, 532
LweI GCATC 2 cut(s) 468, 736
MaeI CTAG 3 cut(s) 288, 840, 872
MalI GATC 6 cut(s) 204, 224, 330, 597, 705, 822
MboI GATC 6 cut(s) 202, 222, 328, 595, 703, 820
MboII GAAGA 9 cut(s) 123, 569, 589, 592, 595, 802, 844, 874, 877
MflI RGATCY 2 cut(s) 222, 595
MhlI GDGCHC 1 cut(s) 118
MluCI AATT 4 cut(s) 270, 456, 468, 802
Mly113I GGCGCC 1 cut(s) 33
MmeI TCCRAC 2 cut(s) 642, 771
MnlI CCTC 8 cut(s) 75, 193, 245, 340, 679, 723, 777, 811
Mph1103I ATGCAT 1 cut(s) 751
MseI TTAA 3 cut(s) 24, 92, 471
MspR9I CCNGG 1 cut(s) 692
MvaI CCWGG 1 cut(s) 692
MwoI GCNNNNNNNGC 2 cut(s) 152, 425
NarI GGCGCC 1 cut(s) 33
NcoI CCATGG 2 cut(s) 504, 611
NdeI CATATG 2 cut(s) 514, 751
NdeII GATC 6 cut(s) 202, 222, 328, 595, 703, 820
NlaIII CATG 9 cut(s) 73, 155, 384, 508, 533, 595, 605, 615, 634
NlaIV GGNNCC 6 cut(s) 34, 116, 224, 266, 452, 499
NsiI ATGCAT 1 cut(s) 751
NspI RCATGY 3 cut(s) 155, 533, 605
PaeI GCATGC 1 cut(s) 605
PceI AGGCCT 1 cut(s) 848
PfeI GAWTC 1 cut(s) 667
PkrI GCNGC 3 cut(s) 148, 187, 522
PluTI GGCGCC 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 690
PspGI CCWGG 1 cut(s) 690
PspN4I GGNNCC 6 cut(s) 34, 116, 224, 266, 452, 499
PspOMI GGGCCC 1 cut(s) 114
PspPI GGNCC 4 cut(s) 114, 115, 544, 688
PsuI RGATCY 2 cut(s) 222, 595
RsaI GTAC 3 cut(s) 48, 361, 800
RsaNI GTAC 3 cut(s) 47, 360, 799
SaqAI TTAA 3 cut(s) 24, 92, 471
SatI GCNGC 3 cut(s) 147, 186, 521
Sau3AI GATC 6 cut(s) 202, 222, 328, 595, 703, 820
Sau96I GGNCC 4 cut(s) 114, 115, 544, 688
ScrFI CCNGG 1 cut(s) 692
SduI GDGCHC 1 cut(s) 118
SfaNI GCATC 2 cut(s) 468, 736
SfcI CTRYAG 1 cut(s) 726
SfoI GGCGCC 1 cut(s) 34
SinI GGWCC 1 cut(s) 544
SmlI CTYRAG 1 cut(s) 431
SmoI CTYRAG 1 cut(s) 431
SphI GCATGC 1 cut(s) 605
Sse9I AATT 4 cut(s) 270, 456, 468, 802
SseBI AGGCCT 1 cut(s) 848
SsiI CCGC 2 cut(s) 146, 743
SspDI GGCGCC 1 cut(s) 32
SspMI CTAG 3 cut(s) 288, 840, 872
StuI AGGCCT 1 cut(s) 848
StyD4I CCNGG 1 cut(s) 690
StyI CCWWGG 3 cut(s) 217, 504, 611
TaqI TCGA 1 cut(s) 649
TasI AATT 4 cut(s) 270, 456, 468, 802
TatI WGTACW 1 cut(s) 798
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 1 cut(s) 667
Tru1I TTAA 3 cut(s) 24, 92, 471
Tru9I TTAA 3 cut(s) 24, 92, 471
TscAI CASTG 2 cut(s) 452, 820
TseI GCWGC 2 cut(s) 185, 520
TspDTI ATGAA 1 cut(s) 123
TspGWI ACGGA 2 cut(s) 215, 844
TspRI CASTG 2 cut(s) 452, 820
VpaK11BI GGWCC 1 cut(s) 544
XbaI TCTAGA 1 cut(s) 287
XceI RCATGY 3 cut(s) 155, 533, 605
XcmI CCANNNNNNNNNTGG 1 cut(s) 76
XspI CTAG 3 cut(s) 288, 840, 872
Zsp2I ATGCAT 1 cut(s) 751
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.