RLG00000003603

Pentatricopeptide repeat-containing protein At4g18975

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0009535
Physical Location & Seq
Reverse (-)
50592671 .. 50596110
3440 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003603

Sequence Viewer

Length: 828 bp
ATGTGGAAATCACCTGCCATATCCTATCTGGTTGGCCGTTTAACTCAGGTTGGAGTTATTAGGGCCCAAATTCTGAGTTCTTCATACAGTACAGTGGCACAAGCTCAAGTATATGACCATAGAACAGGAAAGGTTGTGGTGTCATCAGAGGATCAACACAGCAACCAAGGTAATAGTCATTTTCCTGAGAAAAATGCTGGAGGTGAAAACAGAAACCAAATTGGATGGAATGTTTCTAGAAAGGATAAGGTCAACTTCCTTGTCAATACGCTTCTTGATCTCAATGATAGTAAGGAGGCTGTTTATGGTACTCTTGATGGATGGGTTGCATGGGAGGAAGACTTCCCTGTTGGAAAACTTAGGATGGCATTGATTGCTCTTGAGAAGGAACAGCAGTGGCACCGAATTATTCAGGTAATTAAATGGATGCTAAGCAAGGGACAGGGAACCACCATGGGAACATATGGGCAACTAATACGTGCTTTAGATATGGACCAAAGACCAGAAGAAGCACACAAGTTCTGGCAGAAGAAGATTGGCATGGATCTGCATGCAGTTCCGTGGCAGTTATGCAAAAGCATGATGTCTATATACTATCGAAACAACATGTTGGAGAATCTCGTAAAGCTTTTTGAGGGCCTGGAAGCTTTCGATCGTAAACCTCCACAGAAATCTATAGTCAGGAAAGTAGCGGATGCATATGAGATATTAGGCAGGCTTGACAAAAAAGAGAGGGTGTTGGAGAAGTACAATTATCTCTTCACCGAAGATCGATCACTTAAGAAACCGAGAAAGGCCTCGTCTAAGGAGAAGAAGAAACTAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

276

Amino Acids

31.73

Weight (kDa)

9.56

Isoelectric Point (pI)

28.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009535)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04590 AT1G04590
fragaria_vesca FvH4_5g00240 FvH4_5g00240 FvH4_5g00240 FvH4_5g00240 FvH4_5g00240 FvH4_5g00240 FvH4_5g00240
malus_domestica MD06G1063200.v1.1
prunus_persica Prupe.5G075000_v2.0.a1
pyrus_communis pycom06g06020
rosa_chinensis RchiOBHm_Chr7g0202441
rosa_laevigata RLG00000003603
rosa_multiflora Rmu_sc0031703.1_g000002
rosa_roxburghii Rroxscaffold_3G00254610
rosa_rugosa Rorug07G0070600
rosa_samantha Rh7AG198000 Rh7BG199300 Rh7CG209100 Rh7DG204900
rosa_wichuraiana Rw7G017370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 22
Acc36I ACCTGC 1 cut(s) 22
AccB1I GGYRCC 1 cut(s) 399
AciI CCGC 1 cut(s) 692
AclWI GGATC 2 cut(s) 159, 552
AcoI YGGCCR 1 cut(s) 34
AcsI RAATTY 1 cut(s) 69
AfaI GTAC 3 cut(s) 91, 310, 749
AflII CTTAAG 1 cut(s) 779
AflIII ACRYGT 1 cut(s) 606
AjnI CCWGG 1 cut(s) 639
AluBI AGCT 3 cut(s) 104, 628, 647
AluI AGCT 3 cut(s) 104, 628, 647
AlwI GGATC 2 cut(s) 159, 552
AoxI GGCC 4 cut(s) 34, 63, 637, 795
ApaI GGGCCC 1 cut(s) 67
ApoI RAATTY 1 cut(s) 69
AspS9I GGNCC 4 cut(s) 63, 64, 493, 637
AsuHPI GGTGA 3 cut(s) 3, 215, 754
AvaII GGWCC 1 cut(s) 493
BaeGI GKGCMC 1 cut(s) 67
BanI GGYRCC 1 cut(s) 399
BanII GRGCYC 1 cut(s) 67
BbsI GAAGAC 1 cut(s) 345
BccI CCATC 4 cut(s) 219, 311, 315, 358
BceAI ACGGC 1 cut(s) 21
BciT130I CCWGG 1 cut(s) 641
BfaI CTAG 2 cut(s) 237, 821
BfmI CTRYAG 1 cut(s) 675
BfrI CTTAAG 1 cut(s) 779
BfuAI ACCTGC 1 cut(s) 22
BlpI GCTNAGC 1 cut(s) 431
Bme1390I CCNGG 1 cut(s) 641
Bme18I GGWCC 1 cut(s) 493
BmgT120I GGNCC 4 cut(s) 63, 64, 493, 637
BmiI GGNNCC 3 cut(s) 65, 401, 448
BmrFI CCNGG 1 cut(s) 641
BmsI GCATC 2 cut(s) 417, 685
BpiI GAAGAC 1 cut(s) 345
BpmI CTGGAG 1 cut(s) 219
Bpu1102I GCTNAGC 1 cut(s) 431
BpuEI CTTGAG 2 cut(s) 90, 401
Bsa29I ATCGAT 1 cut(s) 772
BsaAI YACGTR 1 cut(s) 479
BsaJI CCNNGG 3 cut(s) 166, 453, 560
BseBI CCWGG 1 cut(s) 641
BseCI ATCGAT 1 cut(s) 772
BseDI CCNNGG 3 cut(s) 166, 453, 560
BseGI GGATG 5 cut(s) 230, 326, 369, 432, 700
BseMII CTCAG 3 cut(s) 59, 65, 177
BseSI GKGCMC 1 cut(s) 67
Bsh1285I CGRYCG 1 cut(s) 655
BshFI GGCC 4 cut(s) 36, 65, 639, 797
BshNI GGYRCC 1 cut(s) 399
BshVI ATCGAT 1 cut(s) 772
BsiEI CGRYCG 1 cut(s) 655
BslFI GGGAC 1 cut(s) 453
BsmFI GGGAC 1 cut(s) 453
BsnI GGCC 4 cut(s) 36, 65, 639, 797
Bsp120I GGGCCC 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 67
Bsp143I GATC 6 cut(s) 151, 277, 544, 652, 769, 773
Bsp1720I GCTNAGC 1 cut(s) 431
Bsp19I CCATGG 1 cut(s) 453
BspACI CCGC 1 cut(s) 692
BspANI GGCC 4 cut(s) 36, 65, 639, 797
BspCNI CTCAG 3 cut(s) 58, 66, 178
BspDI ATCGAT 1 cut(s) 772
BspLI GGNNCC 3 cut(s) 65, 401, 448
BspMI ACCTGC 1 cut(s) 22
BspPI GGATC 2 cut(s) 159, 552
BspT107I GGYRCC 1 cut(s) 399
BspTI CTTAAG 1 cut(s) 779
BssECI CCNNGG 3 cut(s) 166, 453, 560
BssMI GATC 6 cut(s) 151, 277, 544, 652, 769, 773
BssT1I CCWWGG 2 cut(s) 166, 453
Bst2UI CCWGG 1 cut(s) 641
Bst4CI ACNGT 2 cut(s) 89, 94
Bst6I CTCTTC 1 cut(s) 764
BstAFI CTTAAG 1 cut(s) 779
BstAPI GCANNNNNTGC 1 cut(s) 374
BstBAI YACGTR 1 cut(s) 479
BstC8I GCNNGC 2 cut(s) 552, 716
BstDEI CTNAG 6 cut(s) 45, 74, 186, 359, 431, 804
BstDSI CCRYGG 2 cut(s) 453, 560
BstF5I GGATG 5 cut(s) 230, 326, 369, 432, 700
BstKTI GATC 6 cut(s) 154, 280, 547, 655, 772, 776
BstMBI GATC 6 cut(s) 151, 277, 544, 652, 769, 773
BstMCI CGRYCG 1 cut(s) 655
BstMWI GCNNNNNNNGC 1 cut(s) 374
BstNI CCWGG 1 cut(s) 641
BstNSI RCATGY 2 cut(s) 554, 610
BstSCI CCNGG 1 cut(s) 639
BstSFI CTRYAG 1 cut(s) 675
BstSLI GKGCMC 1 cut(s) 67
BstV2I GAAGAC 1 cut(s) 345
BstX2I RGATCY 1 cut(s) 544
BstYI RGATCY 1 cut(s) 544
Bsu15I ATCGAT 1 cut(s) 772
BsuRI GGCC 4 cut(s) 36, 65, 639, 797
BsuTUI ATCGAT 1 cut(s) 772
BtgI CCRYGG 2 cut(s) 453, 560
BtsCI GGATG 5 cut(s) 230, 326, 369, 432, 700
BtsI GCAGTG 1 cut(s) 401
BtsIMutI CAGTG 2 cut(s) 99, 401
BveI ACCTGC 1 cut(s) 22
Cac8I GCNNGC 2 cut(s) 552, 716
Cfr13I GGNCC 4 cut(s) 63, 64, 493, 637
ClaI ATCGAT 1 cut(s) 772
Csp6I GTAC 3 cut(s) 90, 309, 748
CviAII CATG 6 cut(s) 330, 454, 541, 551, 580, 607
CviJI RGCY 9 cut(s) 36, 65, 104, 299, 628, 639, 647, 718, 797
CviKI_1 RGCY 9 cut(s) 36, 65, 104, 299, 628, 639, 647, 718, 797
CviQI GTAC 3 cut(s) 90, 309, 748
DdeI CTNAG 6 cut(s) 45, 74, 186, 359, 431, 804
DpnI GATC 6 cut(s) 153, 279, 546, 654, 771, 775
DpnII GATC 6 cut(s) 151, 277, 544, 652, 769, 773
EaeI YGGCCR 1 cut(s) 34
Eam1104I CTCTTC 1 cut(s) 764
EarI CTCTTC 1 cut(s) 764
Eco130I CCWWGG 2 cut(s) 166, 453
Eco147I AGGCCT 1 cut(s) 797
Eco24I GRGCYC 1 cut(s) 67
Eco47I GGWCC 1 cut(s) 493
EcoO109I RGGNCCY 2 cut(s) 63, 637
EcoRII CCWGG 1 cut(s) 639
EcoT14I CCWWGG 2 cut(s) 166, 453
EcoT22I ATGCAT 1 cut(s) 700
EcoT38I GRGCYC 1 cut(s) 67
ErhI CCWWGG 2 cut(s) 166, 453
FaeI CATG 6 cut(s) 333, 457, 544, 554, 583, 610
FalI AAGNNNNNCTT 2 cut(s) 239, 271
FaqI GGGAC 1 cut(s) 453
FatI CATG 6 cut(s) 329, 453, 540, 550, 579, 606
FauNDI CATATG 2 cut(s) 463, 700
FokI GGATG 5 cut(s) 237, 333, 376, 439, 707
FriOI GRGCYC 1 cut(s) 67
FspBI CTAG 2 cut(s) 237, 821
GsuI CTGGAG 1 cut(s) 219
HaeIII GGCC 4 cut(s) 36, 65, 639, 797
Hin1II CATG 6 cut(s) 333, 457, 544, 554, 583, 610
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HindIII AAGCTT 2 cut(s) 626, 645
HinfI GANTC 1 cut(s) 616
HphI GGTGA 3 cut(s) 3, 215, 754
Hpy166II GTNNAC 2 cut(s) 253, 659
Hpy188I TCNGA 2 cut(s) 75, 148
Hpy188III TCNNGA 6 cut(s) 185, 237, 275, 314, 380, 682
Hpy8I GTNNAC 2 cut(s) 253, 659
HpyAV CCTTC 1 cut(s) 379
HpyCH4III ACNGT 2 cut(s) 89, 94
HpyCH4IV ACGT 1 cut(s) 478
HpyCH4V TGCA 5 cut(s) 329, 550, 554, 573, 698
HpyF10VI GCNNNNNNNGC 1 cut(s) 374
HpyF3I CTNAG 6 cut(s) 45, 74, 186, 359, 431, 804
HpySE526I ACGT 1 cut(s) 478
Hsp92II CATG 6 cut(s) 333, 457, 544, 554, 583, 610
Kzo9I GATC 6 cut(s) 151, 277, 544, 652, 769, 773
LweI GCATC 2 cut(s) 417, 685
MaeI CTAG 2 cut(s) 237, 821
MaeII ACGT 1 cut(s) 478
MalI GATC 6 cut(s) 153, 279, 546, 654, 771, 775
MboI GATC 6 cut(s) 151, 277, 544, 652, 769, 773
MboII GAAGA 9 cut(s) 72, 350, 518, 541, 544, 751, 779, 823, 826
MflI RGATCY 1 cut(s) 544
MhlI GDGCHC 1 cut(s) 67
MluCI AATT 5 cut(s) 69, 219, 405, 417, 751
MmeI TCCRAC 4 cut(s) 31, 331, 591, 720
MnlI CCTC 8 cut(s) 142, 194, 289, 328, 628, 672, 726, 808
Mph1103I ATGCAT 1 cut(s) 700
MseI TTAA 3 cut(s) 41, 420, 780
MspCI CTTAAG 1 cut(s) 779
MspR9I CCNGG 1 cut(s) 641
MvaI CCWGG 1 cut(s) 641
MwoI GCNNNNNNNGC 1 cut(s) 374
NcoI CCATGG 1 cut(s) 453
NdeI CATATG 2 cut(s) 463, 700
NdeII GATC 6 cut(s) 151, 277, 544, 652, 769, 773
NlaIII CATG 6 cut(s) 333, 457, 544, 554, 583, 610
NlaIV GGNNCC 3 cut(s) 65, 401, 448
NsiI ATGCAT 1 cut(s) 700
NspI RCATGY 2 cut(s) 554, 610
PaeI GCATGC 1 cut(s) 554
PaqCI CACCTGC 1 cut(s) 22
PceI AGGCCT 1 cut(s) 797
PciI ACATGT 1 cut(s) 606
PfeI GAWTC 1 cut(s) 616
Ple19I CGATCG 1 cut(s) 655
Ppu21I YACGTR 1 cut(s) 479
PscI ACATGT 1 cut(s) 606
Psp6I CCWGG 1 cut(s) 639
PspGI CCWGG 1 cut(s) 639
PspN4I GGNNCC 3 cut(s) 65, 401, 448
PspOMI GGGCCC 1 cut(s) 63
PspPI GGNCC 4 cut(s) 63, 64, 493, 637
PsuI RGATCY 1 cut(s) 544
PvuI CGATCG 1 cut(s) 655
RsaI GTAC 3 cut(s) 91, 310, 749
RsaNI GTAC 3 cut(s) 90, 309, 748
SaqAI TTAA 3 cut(s) 41, 420, 780
Sau3AI GATC 6 cut(s) 151, 277, 544, 652, 769, 773
Sau96I GGNCC 4 cut(s) 63, 64, 493, 637
ScrFI CCNGG 1 cut(s) 641
SduI GDGCHC 1 cut(s) 67
SfaNI GCATC 2 cut(s) 417, 685
SfcI CTRYAG 1 cut(s) 675
SinI GGWCC 1 cut(s) 493
SmlI CTYRAG 3 cut(s) 105, 380, 779
SmoI CTYRAG 3 cut(s) 105, 380, 779
SphI GCATGC 1 cut(s) 554
Sse9I AATT 5 cut(s) 69, 219, 405, 417, 751
SseBI AGGCCT 1 cut(s) 797
SsiI CCGC 1 cut(s) 692
SspMI CTAG 2 cut(s) 237, 821
StuI AGGCCT 1 cut(s) 797
StyD4I CCNGG 1 cut(s) 639
StyI CCWWGG 2 cut(s) 166, 453
TaaI ACNGT 2 cut(s) 89, 94
TaiI ACGT 1 cut(s) 481
TaqI TCGA 3 cut(s) 598, 651, 772
TasI AATT 5 cut(s) 69, 219, 405, 417, 751
TatI WGTACW 2 cut(s) 89, 747
TfiI GAWTC 1 cut(s) 616
Tru1I TTAA 3 cut(s) 41, 420, 780
Tru9I TTAA 3 cut(s) 41, 420, 780
TscAI CASTG 2 cut(s) 99, 401
TspDTI ATGAA 1 cut(s) 72
TspGWI ACGGA 1 cut(s) 549
TspRI CASTG 2 cut(s) 99, 401
Vha464I CTTAAG 1 cut(s) 779
VpaK11BI GGWCC 1 cut(s) 493
XapI RAATTY 1 cut(s) 69
XbaI TCTAGA 1 cut(s) 236
XceI RCATGY 2 cut(s) 554, 610
XcmI CCANNNNNNNNNTGG 1 cut(s) 25
XspI CTAG 2 cut(s) 237, 821
Zsp2I ATGCAT 1 cut(s) 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.