AT1G05010

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015010
Physical Location & Seq
Reverse (-)
1431177 .. 1433010
1834 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G05010.1

Sequence Viewer

Length: 972 bp
ATGGAGAGTTTCCCGATCATCAATCTCGAGAAGCTTAATGGAGAAGAGAGAGCAATCACTATGGAGAAGATCAAAGACGCTTGTGAAAACTGGGGCTTCTTTGAGTGTGTGAACCATGGGATTTCACTCGAGCTTTTGGACAAAGTGGAGAAGATGACCAAGGAACATTACAAGAAGTGCATGGAAGAGAGATTCAAGGAATCGATTAAGAACAGAGGTCTTGACTCTCTTCGCTCTGAAGTCAACGACGTTGACTGGGAATCCACTTTCTACCTCAAGCACCTTCCCGTCTCTAATATCTCCGATGTCCCTGATCTCGACGACGATTACAGAACGTTAATGAAAGACTTCGCCGGAAAGATAGAGAAGTTGTCGGAGGAGCTACTGGATCTGCTGTGCGAGAATCTCGGTTTAGAGAAGGGTTATTTAAAAAAGGTGTTTTACGGGTCGAAAAGACCGACTTTTGGAACCAAAGTCAGCAATTATCCACCTTGTCCTAATCCGGACCTAGTCAAGGGTCTCCGAGCCCACACCGACGCCGGCGGCATCATCCTCCTCTTCCAAGACGACAAAGTCAGTGGACTTCAGCTTCTTAAAGACGGCGAGTGGGTCGATGTTCCTCCGGTTAAGCATTCAATCGTCGTTAATCTCGGCGATCAACTTGAGGTGATAACCAATGGGAAGTACAAGAGTGTGGAACATAGAGTGCTATCTCAGACAGACGGAGAAGGAAGAATGTCGATCGCATCATTCTATAATCCGGGAAGCGACTCTGTTATTTTTCCGGCGCCGGAGCTGATCGGAAAAGAAGCAGAGAAGGAGAAGAAAGAGAACTATCCGAGATTTGTGTTTGAAGATTACATGAAACTCTACTCTGCTGTCAAGTTTCAGGCCAAGGAACCAAGGTTTGAAGCCATGAAAGCTATGGAGACAACTGTGGCCAACAATGTTGGACCATTGGCCACTGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009506 GO:0009593 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009651 GO:0009692 GO:0009693 GO:0009719 GO:0009720 GO:0009723 GO:0009725 GO:0009726 GO:0009727 GO:0009735 GO:0009815 GO:0009987 GO:0010029 GO:0010030 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010817 GO:0012505 GO:0016020 GO:0016491 GO:0016638 GO:0016641 GO:0030054 GO:0030312 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043449 GO:0043450 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051606 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0055114 GO:0065007 GO:0065008 GO:0070542 GO:0070887 GO:0071229 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071396 GO:0071398 GO:0071704 GO:0071731 GO:0071732 GO:0071944 GO:0097366 GO:1900140 GO:1900673 GO:1900674 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko00270 ko01100 ko01110 map00270 map01100 map01110
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

323

Amino Acids

36.68

Weight (kDa)

5.24

Isoelectric Point (pI)

33.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 5 - 96 3.9e-16 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 159 - 254 8.3e-35 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015010)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05010
fragaria_vesca FvH4_6g42090
malus_domestica MD09G1114800.v1.1 MD17G1106300.v1.1
prunus_persica Prupe.3G209900_v2.0.a1
pyrus_communis pycom17g09900 pycom17g09920
rosa_chinensis RchiOBHm_Chr2g0158011
rosa_laevigata RLG00000021048
rosa_multiflora Rmu_sc0000419.1_g000014
rosa_roxburghii Rroxscaffold_2G00091750
rosa_rugosa Rorug02G0465200
rosa_samantha Rh2AG531100 Rh2CG515400 Rh2DG553700
rosa_wichuraiana Rw2G043920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 572
AccB1I GGYRCC 1 cut(s) 787
AccIII TCCGGA 1 cut(s) 502
AciI CCGC 1 cut(s) 543
AclI AACGTT 1 cut(s) 335
AclWI GGATC 1 cut(s) 396
AcoI YGGCCR 2 cut(s) 939, 960
AcuI CTGAAG 2 cut(s) 258, 569
AcyI GRCGYC 2 cut(s) 537, 788
AdeI CACNNNGTG 1 cut(s) 969
AfaI GTAC 1 cut(s) 686
AfiI CCNNNNNNNGG 2 cut(s) 464, 514
AgsI TTSAA 4 cut(s) 196, 636, 854, 911
AluBI AGCT 6 cut(s) 34, 133, 382, 589, 796, 923
AluI AGCT 6 cut(s) 34, 133, 382, 589, 796, 923
Alw26I GTCTC 3 cut(s) 295, 524, 923
AlwI GGATC 1 cut(s) 396
Ama87I CYCGRG 2 cut(s) 26, 128
Aor13HI TCCGGA 1 cut(s) 502
AoxI GGCC 3 cut(s) 891, 939, 960
Asp700I GAANNNNTTC 1 cut(s) 347
AspLEI GCGC 1 cut(s) 790
AspS9I GGNCC 2 cut(s) 505, 953
AsuC2I CCSGG 1 cut(s) 762
AsuHPI GGTGA 1 cut(s) 679
AvaI CYCGRG 2 cut(s) 26, 128
AvaII GGWCC 2 cut(s) 505, 953
BalI TGGCCA 2 cut(s) 941, 962
BanI GGYRCC 1 cut(s) 787
BanII GRGCYC 1 cut(s) 529
BceAI ACGGC 1 cut(s) 616
BcnI CCSGG 1 cut(s) 762
BcoDI GTCTC 3 cut(s) 295, 524, 923
BfaI CTAG 1 cut(s) 509
BfoI RGCGCY 1 cut(s) 791
BisI GCNGC 1 cut(s) 544
BlsI GCNGC 1 cut(s) 545
Bme1390I CCNGG 1 cut(s) 762
Bme18I GGWCC 2 cut(s) 505, 953
BmeT110I CYCGRG 2 cut(s) 26, 128
BmgT120I GGNCC 2 cut(s) 505, 953
BmiI GGNNCC 3 cut(s) 469, 789, 900
BmrFI CCNGG 1 cut(s) 762
BmrI ACTGGG 2 cut(s) 100, 265
BmsI GCATC 2 cut(s) 555, 755
BmuI ACTGGG 2 cut(s) 100, 265
BpuEI CTTGAG 2 cut(s) 260, 683
BpuMI CCSGG 1 cut(s) 762
Bsa29I ATCGAT 1 cut(s) 203
BsaHI GRCGYC 2 cut(s) 537, 788
BsaI GGTCTC 1 cut(s) 524
BsaJI CCNNGG 4 cut(s) 115, 159, 894, 902
BsaWI WCCGGW 2 cut(s) 502, 622
Bsc4I CCNNNNNNNGG 2 cut(s) 464, 514
Bse118I RCCGGY 1 cut(s) 539
Bse1I ACTGG 3 cut(s) 95, 260, 390
BseAI TCCGGA 1 cut(s) 502
BseCI ATCGAT 1 cut(s) 203
BseDI CCNNGG 4 cut(s) 115, 159, 894, 902
BseGI GGATG 1 cut(s) 549
BseLI CCNNNNNNNGG 2 cut(s) 464, 514
BseMII CTCAG 1 cut(s) 728
BseNI ACTGG 3 cut(s) 95, 260, 390
BseRI GAGGAG 2 cut(s) 392, 545
Bsh1285I CGRYCG 1 cut(s) 744
BshFI GGCC 3 cut(s) 893, 941, 962
BshNI GGYRCC 1 cut(s) 787
BshVI ATCGAT 1 cut(s) 203
BsiEI CGRYCG 1 cut(s) 744
BsiHKCI CYCGRG 2 cut(s) 26, 128
BsiSI CCGG 7 cut(s) 354, 503, 540, 623, 761, 785, 791
BslFI GGGAC 1 cut(s) 293
BslI CCNNNNNNNGG 2 cut(s) 464, 514
BsmAI GTCTC 3 cut(s) 295, 524, 923
BsmBI CGTCTC 1 cut(s) 295
BsmFI GGGAC 1 cut(s) 293
BsmI GAATGC 1 cut(s) 631
BsnI GGCC 3 cut(s) 893, 941, 962
Bso31I GGTCTC 1 cut(s) 524
BsoBI CYCGRG 2 cut(s) 26, 128
Bsp1286I GDGCHC 1 cut(s) 529
Bsp13I TCCGGA 1 cut(s) 502
Bsp143I GATC 7 cut(s) 15, 69, 313, 388, 655, 741, 798
Bsp19I CCATGG 1 cut(s) 115
BspACI CCGC 1 cut(s) 543
BspANI GGCC 3 cut(s) 893, 941, 962
BspCNI CTCAG 1 cut(s) 727
BspDI ATCGAT 1 cut(s) 203
BspEI TCCGGA 1 cut(s) 502
BspLI GGNNCC 3 cut(s) 469, 789, 900
BspPI GGATC 1 cut(s) 396
BspT107I GGYRCC 1 cut(s) 787
BspTNI GGTCTC 1 cut(s) 524
BsrFI RCCGGY 1 cut(s) 539
BsrI ACTGG 3 cut(s) 95, 260, 390
BssAI RCCGGY 1 cut(s) 539
BssECI CCNNGG 4 cut(s) 115, 159, 894, 902
BssMI GATC 7 cut(s) 15, 69, 313, 388, 655, 741, 798
BssNI GRCGYC 2 cut(s) 537, 788
BssT1I CCWWGG 4 cut(s) 115, 159, 894, 902
Bst4CI ACNGT 1 cut(s) 937
Bst6I CTCTTC 4 cut(s) 39, 180, 234, 563
BstACI GRCGYC 2 cut(s) 537, 788
BstC8I GCNNGC 1 cut(s) 541
BstDEI CTNAG 1 cut(s) 714
BstDSI CCRYGG 1 cut(s) 115
BstENI CCTNNNNNAGG 1 cut(s) 512
BstF5I GGATG 1 cut(s) 549
BstH2I RGCGCY 1 cut(s) 791
BstHHI GCGC 1 cut(s) 790
BstKTI GATC 7 cut(s) 18, 72, 316, 391, 658, 744, 801
BstMAI GTCTC 3 cut(s) 295, 524, 923
BstMBI GATC 7 cut(s) 15, 69, 313, 388, 655, 741, 798
BstMCI CGRYCG 1 cut(s) 744
BstMWI GCNNNNNNNGC 1 cut(s) 920
BstSCI CCNGG 1 cut(s) 760
BstX2I RGATCY 1 cut(s) 388
BstYI RGATCY 1 cut(s) 388
Bsu15I ATCGAT 1 cut(s) 203
BsuRI GGCC 3 cut(s) 893, 941, 962
BsuTUI ATCGAT 1 cut(s) 203
BtgI CCRYGG 1 cut(s) 115
BtsCI GGATG 1 cut(s) 549
BtsI GCAGTG 1 cut(s) 963
BtsIMutI CAGTG 2 cut(s) 583, 963
Cac8I GCNNGC 1 cut(s) 541
CfoI GCGC 1 cut(s) 790
Cfr10I RCCGGY 1 cut(s) 539
Cfr13I GGNCC 2 cut(s) 505, 953
ClaI ATCGAT 1 cut(s) 203
CseI GACGC 2 cut(s) 86, 545
Csp6I GTAC 1 cut(s) 685
CspCI CAANNNNNGTGG 2 cut(s) 559, 594
CviAII CATG 4 cut(s) 116, 181, 862, 916
CviQI GTAC 1 cut(s) 685
DdeI CTNAG 1 cut(s) 714
DinI GGCGCC 1 cut(s) 789
DpnI GATC 7 cut(s) 17, 71, 315, 390, 657, 743, 800
DpnII GATC 7 cut(s) 15, 69, 313, 388, 655, 741, 798
DraI TTTAAA 1 cut(s) 429
DraIII CACNNNGTG 1 cut(s) 969
DrdI GACNNNNNNGTC 1 cut(s) 572
DseDI GACNNNNNNGTC 1 cut(s) 572
EaeI YGGCCR 2 cut(s) 939, 960
Eam1104I CTCTTC 4 cut(s) 39, 180, 234, 563
EarI CTCTTC 4 cut(s) 39, 180, 234, 563
Eco130I CCWWGG 4 cut(s) 115, 159, 894, 902
Eco24I GRGCYC 1 cut(s) 529
Eco31I GGTCTC 1 cut(s) 524
Eco47I GGWCC 2 cut(s) 505, 953
Eco57I CTGAAG 2 cut(s) 258, 569
Eco88I CYCGRG 2 cut(s) 26, 128
EcoNI CCTNNNNNAGG 1 cut(s) 512
EcoT14I CCWWGG 4 cut(s) 115, 159, 894, 902
EcoT38I GRGCYC 1 cut(s) 529
EgeI GGCGCC 1 cut(s) 789
EheI GGCGCC 1 cut(s) 789
ErhI CCWWGG 4 cut(s) 115, 159, 894, 902
Esp3I CGTCTC 1 cut(s) 295
FaeI CATG 4 cut(s) 119, 184, 865, 919
FaiI YATR 8 cut(s) 62, 117, 182, 702, 756, 863, 917, 926
FalI AAGNNNNNCTT 2 cut(s) 445, 477
FaqI GGGAC 1 cut(s) 293
FatI CATG 4 cut(s) 115, 180, 861, 915
Fnu4HI GCNGC 1 cut(s) 544
FokI GGATG 1 cut(s) 536
FriOI GRGCYC 1 cut(s) 529
Fsp4HI GCNGC 1 cut(s) 544
FspBI CTAG 1 cut(s) 509
GlaI GCGC 1 cut(s) 789
GluI GCNGC 1 cut(s) 544
HaeII RGCGCY 1 cut(s) 791
HaeIII GGCC 3 cut(s) 893, 941, 962
HapII CCGG 7 cut(s) 354, 503, 540, 623, 761, 785, 791
HgaI GACGC 2 cut(s) 86, 545
HhaI GCGC 1 cut(s) 790
Hin1I GRCGYC 2 cut(s) 537, 788
Hin1II CATG 4 cut(s) 119, 184, 865, 919
Hin6I GCGC 1 cut(s) 788
HinP1I GCGC 1 cut(s) 788
HincII GTYRAC 2 cut(s) 244, 253
HindII GTYRAC 2 cut(s) 244, 253
HindIII AAGCTT 1 cut(s) 32
HinfI GANTC 6 cut(s) 192, 200, 224, 260, 403, 770
HpaII CCGG 7 cut(s) 354, 503, 540, 623, 761, 785, 791
HphI GGTGA 1 cut(s) 679
Hpy166II GTNNAC 4 cut(s) 112, 244, 253, 581
Hpy188I TCNGA 7 cut(s) 238, 304, 376, 524, 717, 803, 840
Hpy188III TCNNGA 6 cut(s) 13, 26, 28, 221, 317, 503
Hpy8I GTNNAC 4 cut(s) 112, 244, 253, 581
Hpy99I CGWCG 5 cut(s) 251, 323, 326, 539, 644
HpyAV CCTTC 4 cut(s) 293, 412, 722, 811
HpyCH4III ACNGT 1 cut(s) 937
HpyCH4IV ACGT 2 cut(s) 249, 335
HpyCH4V TGCA 1 cut(s) 180
HpyF10VI GCNNNNNNNGC 1 cut(s) 920
HpyF3I CTNAG 1 cut(s) 714
HpySE526I ACGT 2 cut(s) 249, 335
Hsp92I GRCGYC 2 cut(s) 537, 788
Hsp92II CATG 4 cut(s) 119, 184, 865, 919
HspAI GCGC 1 cut(s) 788
KasI GGCGCC 1 cut(s) 787
Kpn2I TCCGGA 1 cut(s) 502
KroI GCCGGC 1 cut(s) 539
KroNI GCCGGC 1 cut(s) 541
Kzo9I GATC 7 cut(s) 15, 69, 313, 388, 655, 741, 798
LmnI GCTCC 2 cut(s) 379, 793
LweI GCATC 2 cut(s) 555, 755
MaeI CTAG 1 cut(s) 509
MaeII ACGT 2 cut(s) 249, 335
MalI GATC 7 cut(s) 17, 71, 315, 390, 657, 743, 800
MboI GATC 7 cut(s) 15, 69, 313, 388, 655, 741, 798
MboII GAAGA 9 cut(s) 56, 79, 163, 197, 221, 550, 744, 835, 866
MflI RGATCY 1 cut(s) 388
MhlI GDGCHC 1 cut(s) 529
MlsI TGGCCA 2 cut(s) 941, 962
MluCI AATT 1 cut(s) 481
MluNI TGGCCA 2 cut(s) 941, 962
Mly113I GGCGCC 1 cut(s) 788
MlyI GAGTC 2 cut(s) 218, 764
MmeI TCCRAC 2 cut(s) 354, 931
MnlI CCTC 7 cut(s) 209, 284, 370, 563, 566, 630, 658
Mox20I TGGCCA 2 cut(s) 941, 962
MreI CGCCGGCG 1 cut(s) 539
MroI TCCGGA 1 cut(s) 502
MroNI GCCGGC 1 cut(s) 539
MroXI GAANNNNTTC 1 cut(s) 347
MscI TGGCCA 2 cut(s) 941, 962
MseI TTAA 7 cut(s) 36, 207, 338, 428, 594, 627, 645
Msp20I TGGCCA 2 cut(s) 941, 962
MspI CCGG 7 cut(s) 354, 503, 540, 623, 761, 785, 791
MspR9I CCNGG 1 cut(s) 762
Mva1269I GAATGC 1 cut(s) 631
MwoI GCNNNNNNNGC 1 cut(s) 920
NaeI GCCGGC 1 cut(s) 541
NarI GGCGCC 1 cut(s) 788
NciI CCSGG 1 cut(s) 762
NcoI CCATGG 1 cut(s) 115
NdeII GATC 7 cut(s) 15, 69, 313, 388, 655, 741, 798
NgoMIV GCCGGC 1 cut(s) 539
NlaIII CATG 4 cut(s) 119, 184, 865, 919
NlaIV GGNNCC 3 cut(s) 469, 789, 900
NmeAIII GCCGAG 1 cut(s) 630
PaeR7I CTCGAG 2 cut(s) 26, 128
PcsI WCGNNNNNNNCGW 1 cut(s) 455
PctI GAATGC 1 cut(s) 631
PdiI GCCGGC 1 cut(s) 541
PdmI GAANNNNTTC 1 cut(s) 347
PfeI GAWTC 4 cut(s) 192, 200, 260, 403
PflFI GACNNNGTC 2 cut(s) 509, 572
PfoI TCCNGGA 1 cut(s) 760
PkrI GCNGC 1 cut(s) 545
Ple19I CGATCG 1 cut(s) 744
PleI GAGTC 2 cut(s) 218, 764
PluTI GGCGCC 1 cut(s) 791
PpsI GAGTC 2 cut(s) 218, 764
Psp1406I AACGTT 1 cut(s) 335
PspN4I GGNNCC 3 cut(s) 469, 789, 900
PspPI GGNCC 2 cut(s) 505, 953
PspXI VCTCGAGB 1 cut(s) 128
PsuI RGATCY 1 cut(s) 388
PsyI GACNNNGTC 2 cut(s) 509, 572
PvuI CGATCG 1 cut(s) 744
RsaI GTAC 1 cut(s) 686
RsaNI GTAC 1 cut(s) 685
SaqAI TTAA 7 cut(s) 36, 207, 338, 428, 594, 627, 645
SatI GCNGC 1 cut(s) 544
Sau3AI GATC 7 cut(s) 15, 69, 313, 388, 655, 741, 798
Sau96I GGNCC 2 cut(s) 505, 953
SchI GAGTC 2 cut(s) 218, 764
ScrFI CCNGG 1 cut(s) 762
SduI GDGCHC 1 cut(s) 529
SfaNI GCATC 2 cut(s) 555, 755
SfoI GGCGCC 1 cut(s) 789
Sfr274I CTCGAG 2 cut(s) 26, 128
SgrAI CRCCGGYG 1 cut(s) 539
SinI GGWCC 2 cut(s) 505, 953
SlaI CTCGAG 2 cut(s) 26, 128
SmlI CTYRAG 4 cut(s) 26, 128, 275, 662
SmoI CTYRAG 4 cut(s) 26, 128, 275, 662
Sse9I AATT 1 cut(s) 481
SsiI CCGC 1 cut(s) 543
SspDI GGCGCC 1 cut(s) 787
SspMI CTAG 1 cut(s) 509
StyD4I CCNGG 1 cut(s) 760
StyI CCWWGG 4 cut(s) 115, 159, 894, 902
TaaI ACNGT 1 cut(s) 937
TaiI ACGT 2 cut(s) 252, 338
TaqI TCGA 7 cut(s) 27, 129, 203, 318, 449, 612, 740
TaqII GACCGA 1 cut(s) 472
TasI AATT 1 cut(s) 481
TatI WGTACW 1 cut(s) 684
TauI GCSGC 1 cut(s) 546
TfiI GAWTC 4 cut(s) 192, 200, 260, 403
Tru1I TTAA 7 cut(s) 36, 207, 338, 428, 594, 627, 645
Tru9I TTAA 7 cut(s) 36, 207, 338, 428, 594, 627, 645
TscAI CASTG 2 cut(s) 583, 970
TspDTI ATGAA 3 cut(s) 356, 878, 932
TspGWI ACGGA 1 cut(s) 738
TspRI CASTG 2 cut(s) 583, 970
Tth111I GACNNNGTC 2 cut(s) 509, 572
VpaK11BI GGWCC 2 cut(s) 505, 953
XagI CCTNNNNNAGG 1 cut(s) 512
XcmI CCANNNNNNNNNTGG 1 cut(s) 922
XhoI CTCGAG 2 cut(s) 26, 128
XmnI GAANNNNTTC 1 cut(s) 347
XspI CTAG 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.