RLG00000021048

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
71405912 .. 71407230
1319 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021048

Sequence Viewer

Length: 963 bp
ATGGAGAACTTGCCAGTCATCAACATGGAGAAACTCAACGGTGAGGAGAGAAAAGCTACAATGGAAACCATCAAAGATGCCTGTGAGAACTGGGGTTTCTTTGAGCTGGTGAATCATGGACTACCCATTGAGCTTCTGGACACAGTGGAGAAGATGACGAAAGGCCACTACAAGAATTGTTTGGAGCAAAGATTTAAGGACCTGGTGGCCAGCAAAGGCCTTGAGGCAGTTAACACTGAGGTCAAAGATATGGACTGGGAGAGCACCTTCCACCTCAAGCACCTTCCCCACTCAAACATCTCAGAAGTCCCAGATCTCGAGGACGAGTACAGGAAGGTCATGAAGGAGTTTGCTCTGAAACTGGAGAAGCTAGCGGAGGAGCTCTTGGACTTGTTCTGTGAGAATCTTGGACTGGAAAAAGGGTACCTCAAGAAGGTCTTCTATGGTTCACAGGGTAGTCCTACCTTCGGCACCAAGGTCAGCAACTACCCTCCGTGCCCCACCCCGGACCTCATCAAGGGTCTCAGGTCCCACACCGACGCCGGCGGCATCATCCTTCTCTTCCAGGATGACAAGGTCAGTGGCCTTCAGCTCCTCAAGGACGGTAAATGGGTTGATGTTCCCCCAATGCGCCACTCCATTGTTATCAACCTTGGTGACCAACTTGAGGTGATTACTAATGGGAAATACAAGAGTGTGGAGCACAGAGTGATTGCCCAGACAGACGGCACCAGAATGTCAATAGCTTCATTCTACAACCCTGGAAGTGATGCAGTTATCTACCCAGCACCATCTCTGGTGGAGAAAGAAGCAGAGGAGAAGAATCAAGTGTACCCGAAATTCGTTTTCGATGACTACATGAAGCTCTATGCAGGCCTCAAGTTCGAGGCCAAGGAACCCAGATTTGAAGCCATGAAAACAGTTGAAGCCAATCCCAGTTTGGCTGCAATTGCCACAGCTTAA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

321

Amino Acids

36.14

Weight (kDa)

5.27

Isoelectric Point (pI)

31.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 4 - 96 2.6e-14 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 160 - 254 1.6e-33 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015010)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05010
fragaria_vesca FvH4_6g42090
malus_domestica MD09G1114800.v1.1 MD17G1106300.v1.1
prunus_persica Prupe.3G209900_v2.0.a1
pyrus_communis pycom17g09900 pycom17g09920
rosa_chinensis RchiOBHm_Chr2g0158011
rosa_laevigata RLG00000021048
rosa_multiflora Rmu_sc0000419.1_g000014
rosa_roxburghii Rroxscaffold_2G00091750
rosa_rugosa Rorug02G0465200
rosa_samantha Rh2AG531100 Rh2CG515400 Rh2DG553700
rosa_wichuraiana Rw2G043920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 423
AccB1I GGYRCC 3 cut(s) 423, 470, 728
AciI CCGC 2 cut(s) 374, 546
AcoI YGGCCR 1 cut(s) 207
AcsI RAATTY 1 cut(s) 839
AcuI CTGAAG 1 cut(s) 572
AcyI GRCGYC 1 cut(s) 540
AdeI CACNNNGTG 1 cut(s) 709
AfaI GTAC 3 cut(s) 329, 425, 833
AfiI CCNNNNNNNGG 5 cut(s) 433, 467, 505, 517, 667
AgsI TTSAA 2 cut(s) 908, 926
AjnI CCWGG 3 cut(s) 201, 564, 760
AluBI AGCT 9 cut(s) 56, 106, 133, 370, 382, 592, 746, 865, 959
AluI AGCT 9 cut(s) 56, 106, 133, 370, 382, 592, 746, 865, 959
Alw21I GWGCWC 3 cut(s) 266, 384, 705
Alw26I GTCTC 1 cut(s) 527
Ama87I CYCGRG 1 cut(s) 317
AoxI GGCC 6 cut(s) 163, 207, 217, 583, 874, 888
ApeKI GCWGC 1 cut(s) 944
ApoI RAATTY 1 cut(s) 839
Asp700I GAANNNNTTC 1 cut(s) 437
Asp718I GGTACC 1 cut(s) 423
AspLEI GCGC 1 cut(s) 633
AspS9I GGNCC 3 cut(s) 199, 508, 528
AsuC2I CCSGG 1 cut(s) 506
AsuHPI GGTGA 4 cut(s) 53, 121, 668, 682
AsuNHI GCTAGC 1 cut(s) 370
AvaI CYCGRG 1 cut(s) 317
AvaII GGWCC 3 cut(s) 199, 508, 528
BaeGI GKGCMC 1 cut(s) 500
BalI TGGCCA 1 cut(s) 209
BanI GGYRCC 3 cut(s) 423, 470, 728
BanII GRGCYC 1 cut(s) 384
BbsI GAAGAC 1 cut(s) 430
Bbv12I GWGCWC 3 cut(s) 266, 384, 705
BbvI GCAGC 1 cut(s) 931
BccI CCATC 2 cut(s) 77, 799
BceAI ACGGC 1 cut(s) 742
BciT130I CCWGG 3 cut(s) 203, 566, 762
BcnI CCSGG 1 cut(s) 506
BcoDI GTCTC 1 cut(s) 527
BfaI CTAG 1 cut(s) 371
BglII AGATCT 1 cut(s) 313
BisI GCNGC 2 cut(s) 547, 945
BlsI GCNGC 2 cut(s) 548, 946
Bme1390I CCNGG 4 cut(s) 203, 506, 566, 762
Bme18I GGWCC 3 cut(s) 199, 508, 528
BmeT110I CYCGRG 1 cut(s) 317
BmgT120I GGNCC 3 cut(s) 199, 508, 528
BmiI GGNNCC 5 cut(s) 425, 472, 530, 730, 897
BmrFI CCNGG 4 cut(s) 203, 506, 566, 762
BmrI ACTGGG 3 cut(s) 100, 265, 930
BmsI GCATC 3 cut(s) 67, 558, 760
BmtI GCTAGC 1 cut(s) 374
BmuI ACTGGG 3 cut(s) 100, 265, 930
BpiI GAAGAC 1 cut(s) 430
BpmI CTGGAG 1 cut(s) 383
BpuEI CTTGAG 6 cut(s) 242, 260, 413, 581, 686, 863
BpuMI CCSGG 1 cut(s) 506
BsaHI GRCGYC 1 cut(s) 540
BsaI GGTCTC 1 cut(s) 527
BsaJI CCNNGG 5 cut(s) 474, 504, 652, 760, 891
Bsc4I CCNNNNNNNGG 5 cut(s) 433, 467, 505, 517, 667
Bse118I RCCGGY 1 cut(s) 542
Bse1I ACTGG 6 cut(s) 14, 95, 260, 366, 417, 936
BseBI CCWGG 3 cut(s) 203, 566, 762
BseDI CCNNGG 5 cut(s) 474, 504, 652, 760, 891
BseGI GGATG 2 cut(s) 552, 574
BseLI CCNNNNNNNGG 5 cut(s) 433, 467, 505, 517, 667
BseMII CTCAG 3 cut(s) 228, 315, 538
BseNI ACTGG 6 cut(s) 14, 95, 260, 366, 417, 936
BseRI GAGGAG 4 cut(s) 59, 392, 584, 830
BseSI GKGCMC 1 cut(s) 500
BseXI GCAGC 1 cut(s) 931
BseYI CCCAGC 1 cut(s) 784
BshFI GGCC 6 cut(s) 165, 209, 219, 585, 876, 890
BshNI GGYRCC 3 cut(s) 423, 470, 728
BsiHKAI GWGCWC 3 cut(s) 266, 384, 705
BsiHKCI CYCGRG 1 cut(s) 317
BsiSI CCGG 2 cut(s) 506, 543
BslFI GGGAC 2 cut(s) 293, 514
BslI CCNNNNNNNGG 5 cut(s) 433, 467, 505, 517, 667
BsmAI GTCTC 1 cut(s) 527
BsmFI GGGAC 2 cut(s) 293, 514
BsnI GGCC 6 cut(s) 165, 209, 219, 585, 876, 890
Bso31I GGTCTC 1 cut(s) 527
BsoBI CYCGRG 1 cut(s) 317
Bsp1286I GDGCHC 4 cut(s) 266, 384, 500, 705
Bsp143I GATC 1 cut(s) 313
BspACI CCGC 2 cut(s) 374, 546
BspANI GGCC 6 cut(s) 165, 209, 219, 585, 876, 890
BspCNI CTCAG 3 cut(s) 229, 314, 537
BspHI TCATGA 1 cut(s) 339
BspLI GGNNCC 5 cut(s) 425, 472, 530, 730, 897
BspOI GCTAGC 1 cut(s) 374
BspT107I GGYRCC 3 cut(s) 423, 470, 728
BspTNI GGTCTC 1 cut(s) 527
BsrFI RCCGGY 1 cut(s) 542
BsrI ACTGG 6 cut(s) 14, 95, 260, 366, 417, 936
BssAI RCCGGY 1 cut(s) 542
BssECI CCNNGG 5 cut(s) 474, 504, 652, 760, 891
BssMI GATC 1 cut(s) 313
BssNI GRCGYC 1 cut(s) 540
BssT1I CCWWGG 3 cut(s) 474, 652, 891
Bst2UI CCWGG 3 cut(s) 203, 566, 762
Bst4CI ACNGT 4 cut(s) 41, 145, 605, 922
Bst6I CTCTTC 1 cut(s) 566
BstACI GRCGYC 1 cut(s) 540
BstC8I GCNNGC 4 cut(s) 211, 372, 544, 874
BstDEI CTNAG 3 cut(s) 237, 301, 524
BstEII GGTNACC 1 cut(s) 656
BstENI CCTNNNNNAGG 2 cut(s) 431, 515
BstF5I GGATG 2 cut(s) 552, 574
BstHHI GCGC 1 cut(s) 633
BstKTI GATC 1 cut(s) 316
BstMAI GTCTC 1 cut(s) 527
BstMBI GATC 1 cut(s) 313
BstMWI GCNNNNNNNGC 1 cut(s) 950
BstNI CCWGG 3 cut(s) 203, 566, 762
BstPI GGTNACC 1 cut(s) 656
BstSCI CCNGG 4 cut(s) 201, 504, 564, 760
BstSLI GKGCMC 1 cut(s) 500
BstV1I GCAGC 1 cut(s) 931
BstV2I GAAGAC 1 cut(s) 430
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
BsuRI GGCC 6 cut(s) 165, 209, 219, 585, 876, 890
BtsCI GGATG 2 cut(s) 552, 574
BtsIMutI CAGTG 3 cut(s) 150, 234, 586
Cac8I GCNNGC 4 cut(s) 211, 372, 544, 874
CciI TCATGA 1 cut(s) 339
CfoI GCGC 1 cut(s) 633
Cfr10I RCCGGY 1 cut(s) 542
Cfr13I GGNCC 3 cut(s) 199, 508, 528
CseI GACGC 1 cut(s) 548
CsiI ACCWGGT 1 cut(s) 201
Csp6I GTAC 3 cut(s) 328, 424, 832
CspCI CAANNNNNGTGG 2 cut(s) 562, 597
CviAII CATG 5 cut(s) 25, 116, 340, 859, 913
CviQI GTAC 3 cut(s) 328, 424, 832
DdeI CTNAG 3 cut(s) 237, 301, 524
DpnI GATC 1 cut(s) 315
DpnII GATC 1 cut(s) 313
DraIII CACNNNGTG 1 cut(s) 709
EaeI YGGCCR 1 cut(s) 207
Eam1104I CTCTTC 1 cut(s) 566
EarI CTCTTC 1 cut(s) 566
Ecl136II GAGCTC 1 cut(s) 382
Eco130I CCWWGG 3 cut(s) 474, 652, 891
Eco147I AGGCCT 2 cut(s) 219, 876
Eco24I GRGCYC 1 cut(s) 384
Eco31I GGTCTC 1 cut(s) 527
Eco47I GGWCC 3 cut(s) 199, 508, 528
Eco53kI GAGCTC 1 cut(s) 382
Eco57I CTGAAG 1 cut(s) 572
Eco88I CYCGRG 1 cut(s) 317
Eco91I GGTNACC 1 cut(s) 656
EcoICRI GAGCTC 1 cut(s) 382
EcoNI CCTNNNNNAGG 2 cut(s) 431, 515
EcoO109I RGGNCCY 2 cut(s) 199, 528
EcoO65I GGTNACC 1 cut(s) 656
EcoRII CCWGG 3 cut(s) 201, 564, 760
EcoT14I CCWWGG 3 cut(s) 474, 652, 891
EcoT38I GRGCYC 1 cut(s) 384
ErhI CCWWGG 3 cut(s) 474, 652, 891
FaeI CATG 5 cut(s) 28, 119, 343, 862, 916
FaiI YATR 8 cut(s) 26, 117, 251, 341, 444, 860, 870, 914
FalI AAGNNNNNCTT 2 cut(s) 422, 454
FaqI GGGAC 2 cut(s) 293, 514
FatI CATG 5 cut(s) 24, 115, 339, 858, 912
Fnu4HI GCNGC 2 cut(s) 547, 945
FokI GGATG 2 cut(s) 539, 581
FriOI GRGCYC 1 cut(s) 384
Fsp4HI GCNGC 2 cut(s) 547, 945
FspBI CTAG 1 cut(s) 371
GlaI GCGC 1 cut(s) 632
GluI GCNGC 2 cut(s) 547, 945
GsaI CCCAGC 1 cut(s) 788
GsuI CTGGAG 1 cut(s) 383
HaeIII GGCC 6 cut(s) 165, 209, 219, 585, 876, 890
HapII CCGG 2 cut(s) 506, 543
HgaI GACGC 1 cut(s) 548
HhaI GCGC 1 cut(s) 633
Hin1I GRCGYC 1 cut(s) 540
Hin1II CATG 5 cut(s) 28, 119, 343, 862, 916
Hin6I GCGC 1 cut(s) 631
HinP1I GCGC 1 cut(s) 631
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HinfI GANTC 3 cut(s) 112, 403, 823
HpaI GTTAAC 1 cut(s) 232
HpaII CCGG 2 cut(s) 506, 543
HphI GGTGA 4 cut(s) 53, 121, 668, 682
Hpy166II GTNNAC 3 cut(s) 232, 449, 832
Hpy188I TCNGA 2 cut(s) 304, 357
Hpy188III TCNNGA 4 cut(s) 137, 317, 340, 430
Hpy8I GTNNAC 3 cut(s) 232, 449, 832
Hpy99I CGWCG 1 cut(s) 542
HpyAV CCTTC 8 cut(s) 277, 293, 328, 337, 427, 475, 566, 596
HpyCH4III ACNGT 4 cut(s) 41, 145, 605, 922
HpyCH4V TGCA 3 cut(s) 773, 872, 947
HpyF10VI GCNNNNNNNGC 1 cut(s) 950
HpyF3I CTNAG 3 cut(s) 237, 301, 524
Hsp92I GRCGYC 1 cut(s) 540
Hsp92II CATG 5 cut(s) 28, 119, 343, 862, 916
HspAI GCGC 1 cut(s) 631
KpnI GGTACC 1 cut(s) 427
KroI GCCGGC 1 cut(s) 542
KroNI GCCGGC 1 cut(s) 544
KspAI GTTAAC 1 cut(s) 232
Kzo9I GATC 1 cut(s) 313
LmnI GCTCC 4 cut(s) 184, 379, 597, 700
Lsp1109I GCAGC 1 cut(s) 931
LweI GCATC 3 cut(s) 67, 558, 760
MabI ACCWGGT 1 cut(s) 201
MaeI CTAG 1 cut(s) 371
MaeIII GTNAC 1 cut(s) 656
MalI GATC 1 cut(s) 315
MboI GATC 1 cut(s) 313
MboII GAAGA 4 cut(s) 163, 430, 553, 832
MfeI CAATTG 1 cut(s) 948
MflI RGATCY 1 cut(s) 313
MhlI GDGCHC 4 cut(s) 266, 384, 500, 705
MlsI TGGCCA 1 cut(s) 209
MluCI AATT 3 cut(s) 175, 839, 948
MluNI TGGCCA 1 cut(s) 209
Mox20I TGGCCA 1 cut(s) 209
MreI CGCCGGCG 1 cut(s) 542
MroNI GCCGGC 1 cut(s) 542
MroXI GAANNNNTTC 1 cut(s) 437
MscI TGGCCA 1 cut(s) 209
MseI TTAA 3 cut(s) 195, 231, 961
MslI CAYNNNNRTG 2 cut(s) 23, 734
Msp20I TGGCCA 1 cut(s) 209
MspI CCGG 2 cut(s) 506, 543
MspR9I CCNGG 4 cut(s) 203, 506, 566, 762
MunI CAATTG 1 cut(s) 948
MvaI CCWGG 3 cut(s) 203, 566, 762
MwoI GCNNNNNNNGC 1 cut(s) 950
NaeI GCCGGC 1 cut(s) 544
NciI CCSGG 1 cut(s) 506
NdeII GATC 1 cut(s) 313
NgoMIV GCCGGC 1 cut(s) 542
NheI GCTAGC 1 cut(s) 370
NlaIII CATG 5 cut(s) 28, 119, 343, 862, 916
NlaIV GGNNCC 5 cut(s) 425, 472, 530, 730, 897
NmuCI GTSAC 1 cut(s) 656
PaeR7I CTCGAG 1 cut(s) 317
PagI TCATGA 1 cut(s) 339
PceI AGGCCT 2 cut(s) 219, 876
PdiI GCCGGC 1 cut(s) 544
PdmI GAANNNNTTC 1 cut(s) 437
PfeI GAWTC 3 cut(s) 112, 403, 823
PflFI GACNNNGTC 1 cut(s) 575
PfoI TCCNGGA 1 cut(s) 564
PkrI GCNGC 2 cut(s) 548, 946
PpuMI RGGWCCY 2 cut(s) 199, 528
Psp124BI GAGCTC 1 cut(s) 384
Psp5II RGGWCCY 2 cut(s) 199, 528
Psp6I CCWGG 3 cut(s) 201, 564, 760
PspEI GGTNACC 1 cut(s) 656
PspFI CCCAGC 1 cut(s) 784
PspGI CCWGG 3 cut(s) 201, 564, 760
PspN4I GGNNCC 5 cut(s) 425, 472, 530, 730, 897
PspPI GGNCC 3 cut(s) 199, 508, 528
PspPPI RGGWCCY 2 cut(s) 199, 528
PsuI RGATCY 1 cut(s) 313
PsyI GACNNNGTC 1 cut(s) 575
RsaI GTAC 3 cut(s) 329, 425, 833
RsaNI GTAC 3 cut(s) 328, 424, 832
RseI CAYNNNNRTG 2 cut(s) 23, 734
SacI GAGCTC 1 cut(s) 384
SaqAI TTAA 3 cut(s) 195, 231, 961
SatI GCNGC 2 cut(s) 547, 945
Sau3AI GATC 1 cut(s) 313
Sau96I GGNCC 3 cut(s) 199, 508, 528
ScrFI CCNGG 4 cut(s) 203, 506, 566, 762
SduI GDGCHC 4 cut(s) 266, 384, 500, 705
SexAI ACCWGGT 1 cut(s) 201
SfaNI GCATC 3 cut(s) 67, 558, 760
Sfr274I CTCGAG 1 cut(s) 317
SgrAI CRCCGGYG 1 cut(s) 542
SinI GGWCC 3 cut(s) 199, 508, 528
SlaI CTCGAG 1 cut(s) 317
SmiMI CAYNNNNRTG 2 cut(s) 23, 734
SmlI CTYRAG 7 cut(s) 221, 275, 317, 428, 596, 665, 878
SmoI CTYRAG 7 cut(s) 221, 275, 317, 428, 596, 665, 878
Sse9I AATT 3 cut(s) 175, 839, 948
SseBI AGGCCT 2 cut(s) 219, 876
SsiI CCGC 2 cut(s) 374, 546
SspMI CTAG 1 cut(s) 371
SstI GAGCTC 1 cut(s) 384
StuI AGGCCT 2 cut(s) 219, 876
StyD4I CCNGG 4 cut(s) 201, 504, 564, 760
StyI CCWWGG 3 cut(s) 474, 652, 891
TaaI ACNGT 4 cut(s) 41, 145, 605, 922
TaqI TCGA 3 cut(s) 318, 849, 885
TasI AATT 3 cut(s) 175, 839, 948
TatI WGTACW 1 cut(s) 327
TauI GCSGC 1 cut(s) 549
TfiI GAWTC 3 cut(s) 112, 403, 823
Tru1I TTAA 3 cut(s) 195, 231, 961
Tru9I TTAA 3 cut(s) 195, 231, 961
TscAI CASTG 3 cut(s) 150, 241, 586
TseFI GTSAC 1 cut(s) 656
TseI GCWGC 1 cut(s) 944
Tsp45I GTSAC 1 cut(s) 656
TspDTI ATGAA 4 cut(s) 356, 738, 875, 929
TspGWI ACGGA 1 cut(s) 483
TspRI CASTG 3 cut(s) 150, 241, 586
Tth111I GACNNNGTC 1 cut(s) 575
VpaK11BI GGWCC 3 cut(s) 199, 508, 528
XagI CCTNNNNNAGG 2 cut(s) 431, 515
XapI RAATTY 1 cut(s) 839
XcmI CCANNNNNNNNNTGG 2 cut(s) 133, 937
XhoI CTCGAG 1 cut(s) 317
XmnI GAANNNNTTC 1 cut(s) 437
XspI CTAG 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.