FvH4_6g42090

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
32934877 .. 32936920
2044 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g42090.t1

Sequence Viewer

Length: 963 bp
ATGGAGAACTTTCCAGTCATCAACATGGAGAAACTCAACGGTGAAGAGAGAAAAGCAACAATGGAAACCATCAAAGATGCCTGTGAGAACTGGGGTTTCTTTGAGCTGGTGAATCATGGGATAGCCACTGAGTTTCTGGACACGGTGGAGAAGATGACCAAAGACCACTACAAGAATTGTTTGGAGCAACGATTTAAGGAGCTGGTGGCCAGCAAAGGCCTTAACGCAGTTAACACTGAGGTCAATGACATGGACTGGGAGAGCACCTTCTACCTCAAGCACCTTCCTCGCTCCAACATCTCAGAAGTCCCAGATCTCGACGAAGAGTACAGGAAGGTCATGAAGGAGTTTGCTCTGAAACTGGAGAAGCTAGCAGAGGAGCTCTTGGACTTGTTCTGCGAGAATCTTGGACTGGAGAAAGGGTACCTCAAGAAGGCCTTCTATGGCTCACAGGGTAGTCCTACCTTTGGCACTAAGGTCAGCAACTACCCTCCGTGCCCCACCCCGGACCTCATCAAGGGTCTCCGGTCTCACACCGACGCCGGCGGCGTCATCCTTCTGTTCCAGGATGACAAGGTCAGTGGCCTTCAGCTCCTCAAGGATGGGGAATGGATTGATGTGCCCCCAATGCGCCACTCCATTGTTATTAACCTTGGTGACCAGCTTGAGGTGATTACTAATGGAAAGTACAAGAGTGTGGAGCACAGAGTGATTGCCCAGACAGATGGCACCAGAATGTCAATAGCTTCATTCTACAACCCTGGAAGTGATGCAGTTATCTACCCGGCAACATCTTTGGTGGAGAAAGAAGCAGAGGAGAAGAATCAAGTATACCCGAAATTCGTGTTCGATGACTACATGAAGCTCTATGCAGGCCTCAAGTTCCAGGCCAAGGAACCCAGATTTGAAGCCATGAAAACAGTTGAAGCCAATCCCAGTTTGGCTGCAATTGCTACAGCTTAA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

321

Amino Acids

36.23

Weight (kDa)

5.08

Isoelectric Point (pI)

31.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 5 - 96 2e-14 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 160 - 254 2.5e-33 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015010)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05010
fragaria_vesca FvH4_6g42090
malus_domestica MD09G1114800.v1.1 MD17G1106300.v1.1
prunus_persica Prupe.3G209900_v2.0.a1
pyrus_communis pycom17g09900 pycom17g09920
rosa_chinensis RchiOBHm_Chr2g0158011
rosa_laevigata RLG00000021048
rosa_multiflora Rmu_sc0000419.1_g000014
rosa_roxburghii Rroxscaffold_2G00091750
rosa_rugosa Rorug02G0465200
rosa_samantha Rh2AG531100 Rh2CG515400 Rh2DG553700
rosa_wichuraiana Rw2G043920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 423
AccB1I GGYRCC 2 cut(s) 423, 728
AccI GTMKAC 1 cut(s) 831
AciI CCGC 1 cut(s) 546
AcoI YGGCCR 1 cut(s) 207
AcsI RAATTY 1 cut(s) 839
AcuI CTGAAG 1 cut(s) 572
AcyI GRCGYC 2 cut(s) 540, 549
AdeI CACNNNGTG 1 cut(s) 709
AfaI GTAC 3 cut(s) 329, 425, 689
AfiI CCNNNNNNNGG 6 cut(s) 433, 467, 505, 517, 667, 892
AgsI TTSAA 2 cut(s) 908, 926
AjnI CCWGG 3 cut(s) 564, 760, 885
AluBI AGCT 9 cut(s) 106, 202, 370, 382, 592, 664, 746, 865, 959
AluI AGCT 9 cut(s) 106, 202, 370, 382, 592, 664, 746, 865, 959
Alw21I GWGCWC 3 cut(s) 266, 384, 705
Alw26I GTCTC 2 cut(s) 527, 534
AoxI GGCC 6 cut(s) 207, 217, 435, 583, 874, 888
ApeKI GCWGC 1 cut(s) 944
ApoI RAATTY 1 cut(s) 839
Asp700I GAANNNNTTC 1 cut(s) 437
Asp718I GGTACC 1 cut(s) 423
AspLEI GCGC 1 cut(s) 633
AspS9I GGNCC 1 cut(s) 508
AsuC2I CCSGG 2 cut(s) 506, 785
AsuHPI GGTGA 4 cut(s) 53, 121, 668, 682
AsuNHI GCTAGC 1 cut(s) 370
AvaII GGWCC 1 cut(s) 508
BaeGI GKGCMC 2 cut(s) 500, 624
BalI TGGCCA 1 cut(s) 209
BanI GGYRCC 2 cut(s) 423, 728
BanII GRGCYC 1 cut(s) 384
Bbv12I GWGCWC 3 cut(s) 266, 384, 705
BbvI GCAGC 1 cut(s) 931
BccI CCATC 3 cut(s) 77, 596, 719
BcgI CGANNNNNNTGC 2 cut(s) 269, 303
BciT130I CCWGG 3 cut(s) 566, 762, 887
BcnI CCSGG 2 cut(s) 506, 785
BcoDI GTCTC 2 cut(s) 527, 534
BfaI CTAG 1 cut(s) 371
BfmI CTRYAG 1 cut(s) 954
BglII AGATCT 1 cut(s) 313
BisI GCNGC 2 cut(s) 547, 945
BlsI GCNGC 2 cut(s) 548, 946
Bme1390I CCNGG 5 cut(s) 506, 566, 762, 785, 887
Bme18I GGWCC 1 cut(s) 508
BmgT120I GGNCC 1 cut(s) 508
BmiI GGNNCC 3 cut(s) 425, 730, 897
BmrFI CCNGG 5 cut(s) 506, 566, 762, 785, 887
BmrI ACTGGG 3 cut(s) 100, 265, 930
BmsI GCATC 2 cut(s) 67, 760
BmtI GCTAGC 1 cut(s) 374
BmuI ACTGGG 3 cut(s) 100, 265, 930
BpmI CTGGAG 2 cut(s) 383, 434
BpuEI CTTGAG 5 cut(s) 260, 413, 581, 686, 863
BpuMI CCSGG 2 cut(s) 506, 785
BsaHI GRCGYC 2 cut(s) 540, 549
BsaI GGTCTC 2 cut(s) 527, 534
BsaJI CCNNGG 4 cut(s) 504, 652, 760, 891
BsaWI WCCGGW 1 cut(s) 525
BsaXI ACNNNNNCTCC 2 cut(s) 407, 437
Bsc4I CCNNNNNNNGG 6 cut(s) 433, 467, 505, 517, 667, 892
Bse118I RCCGGY 1 cut(s) 542
Bse1I ACTGG 6 cut(s) 14, 95, 260, 366, 417, 936
BseBI CCWGG 3 cut(s) 566, 762, 887
BseDI CCNNGG 4 cut(s) 504, 652, 760, 891
BseGI GGATG 3 cut(s) 552, 574, 607
BseLI CCNNNNNNNGG 6 cut(s) 433, 467, 505, 517, 667, 892
BseMII CTCAG 3 cut(s) 120, 228, 315
BseNI ACTGG 6 cut(s) 14, 95, 260, 366, 417, 936
BseRI GAGGAG 3 cut(s) 392, 584, 830
BseSI GKGCMC 2 cut(s) 500, 624
BseXI GCAGC 1 cut(s) 931
BshFI GGCC 6 cut(s) 209, 219, 437, 585, 876, 890
BshNI GGYRCC 2 cut(s) 423, 728
BsiHKAI GWGCWC 3 cut(s) 266, 384, 705
BsiSI CCGG 4 cut(s) 506, 526, 543, 785
BslFI GGGAC 1 cut(s) 293
BslI CCNNNNNNNGG 6 cut(s) 433, 467, 505, 517, 667, 892
BsmAI GTCTC 2 cut(s) 527, 534
BsmFI GGGAC 1 cut(s) 293
BsnI GGCC 6 cut(s) 209, 219, 437, 585, 876, 890
Bso31I GGTCTC 2 cut(s) 527, 534
Bsp1286I GDGCHC 5 cut(s) 266, 384, 500, 624, 705
Bsp143I GATC 1 cut(s) 313
BspACI CCGC 1 cut(s) 546
BspANI GGCC 6 cut(s) 209, 219, 437, 585, 876, 890
BspCNI CTCAG 3 cut(s) 121, 229, 314
BspHI TCATGA 1 cut(s) 339
BspLI GGNNCC 3 cut(s) 425, 730, 897
BspOI GCTAGC 1 cut(s) 374
BspT107I GGYRCC 2 cut(s) 423, 728
BspTNI GGTCTC 2 cut(s) 527, 534
BsrFI RCCGGY 1 cut(s) 542
BsrI ACTGG 6 cut(s) 14, 95, 260, 366, 417, 936
BssAI RCCGGY 1 cut(s) 542
BssECI CCNNGG 4 cut(s) 504, 652, 760, 891
BssMI GATC 1 cut(s) 313
BssNAI GTATAC 1 cut(s) 832
BssNI GRCGYC 2 cut(s) 540, 549
BssT1I CCWWGG 2 cut(s) 652, 891
Bst1107I GTATAC 1 cut(s) 832
Bst2UI CCWGG 3 cut(s) 566, 762, 887
Bst4CI ACNGT 3 cut(s) 41, 145, 922
Bst6I CTCTTC 2 cut(s) 39, 318
BstACI GRCGYC 2 cut(s) 540, 549
BstC8I GCNNGC 4 cut(s) 211, 372, 544, 874
BstDEI CTNAG 4 cut(s) 129, 237, 301, 474
BstEII GGTNACC 1 cut(s) 656
BstENI CCTNNNNNAGG 2 cut(s) 431, 515
BstF5I GGATG 3 cut(s) 552, 574, 607
BstHHI GCGC 1 cut(s) 633
BstKTI GATC 1 cut(s) 316
BstMAI GTCTC 2 cut(s) 527, 534
BstMBI GATC 1 cut(s) 313
BstMWI GCNNNNNNNGC 2 cut(s) 628, 950
BstNI CCWGG 3 cut(s) 566, 762, 887
BstPI GGTNACC 1 cut(s) 656
BstSCI CCNGG 5 cut(s) 504, 564, 760, 783, 885
BstSFI CTRYAG 1 cut(s) 954
BstSLI GKGCMC 2 cut(s) 500, 624
BstV1I GCAGC 1 cut(s) 931
BstX2I RGATCY 1 cut(s) 313
BstXI CCANNNNNNTGG 1 cut(s) 725
BstYI RGATCY 1 cut(s) 313
BstZ17I GTATAC 1 cut(s) 832
BsuRI GGCC 6 cut(s) 209, 219, 437, 585, 876, 890
BtsCI GGATG 3 cut(s) 552, 574, 607
BtsIMutI CAGTG 3 cut(s) 126, 234, 586
Cac8I GCNNGC 4 cut(s) 211, 372, 544, 874
CciI TCATGA 1 cut(s) 339
CfoI GCGC 1 cut(s) 633
Cfr10I RCCGGY 1 cut(s) 542
Cfr13I GGNCC 1 cut(s) 508
CseI GACGC 2 cut(s) 538, 548
Csp6I GTAC 3 cut(s) 328, 424, 688
CspCI CAANNNNNGTGG 2 cut(s) 562, 597
CviAII CATG 6 cut(s) 25, 116, 250, 340, 859, 913
CviQI GTAC 3 cut(s) 328, 424, 688
DdeI CTNAG 4 cut(s) 129, 237, 301, 474
DpnI GATC 1 cut(s) 315
DpnII GATC 1 cut(s) 313
DraIII CACNNNGTG 1 cut(s) 709
EaeI YGGCCR 1 cut(s) 207
Eam1104I CTCTTC 2 cut(s) 39, 318
EarI CTCTTC 2 cut(s) 39, 318
Ecl136II GAGCTC 1 cut(s) 382
Eco130I CCWWGG 2 cut(s) 652, 891
Eco147I AGGCCT 3 cut(s) 219, 437, 876
Eco24I GRGCYC 1 cut(s) 384
Eco31I GGTCTC 2 cut(s) 527, 534
Eco47I GGWCC 1 cut(s) 508
Eco53kI GAGCTC 1 cut(s) 382
Eco57I CTGAAG 1 cut(s) 572
Eco91I GGTNACC 1 cut(s) 656
EcoICRI GAGCTC 1 cut(s) 382
EcoNI CCTNNNNNAGG 2 cut(s) 431, 515
EcoO65I GGTNACC 1 cut(s) 656
EcoRII CCWGG 3 cut(s) 564, 760, 885
EcoT14I CCWWGG 2 cut(s) 652, 891
EcoT38I GRGCYC 1 cut(s) 384
ErhI CCWWGG 2 cut(s) 652, 891
FaeI CATG 6 cut(s) 28, 119, 253, 343, 862, 916
FaiI YATR 9 cut(s) 26, 117, 251, 341, 444, 832, 860, 870, 914
FalI AAGNNNNNCTT 2 cut(s) 422, 454
FaqI GGGAC 1 cut(s) 293
FatI CATG 6 cut(s) 24, 115, 249, 339, 858, 912
FblI GTMKAC 1 cut(s) 831
Fnu4HI GCNGC 2 cut(s) 547, 945
FokI GGATG 3 cut(s) 539, 581, 614
FriOI GRGCYC 1 cut(s) 384
Fsp4HI GCNGC 2 cut(s) 547, 945
FspBI CTAG 1 cut(s) 371
GlaI GCGC 1 cut(s) 632
GluI GCNGC 2 cut(s) 547, 945
GsuI CTGGAG 2 cut(s) 383, 434
HaeIII GGCC 6 cut(s) 209, 219, 437, 585, 876, 890
HapII CCGG 4 cut(s) 506, 526, 543, 785
HgaI GACGC 2 cut(s) 538, 548
HhaI GCGC 1 cut(s) 633
Hin1I GRCGYC 2 cut(s) 540, 549
Hin1II CATG 6 cut(s) 28, 119, 253, 343, 862, 916
Hin6I GCGC 1 cut(s) 631
HinP1I GCGC 1 cut(s) 631
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HinfI GANTC 3 cut(s) 112, 403, 823
HpaI GTTAAC 1 cut(s) 232
HpaII CCGG 4 cut(s) 506, 526, 543, 785
HphI GGTGA 4 cut(s) 53, 121, 668, 682
Hpy166II GTNNAC 2 cut(s) 232, 832
Hpy188I TCNGA 2 cut(s) 304, 357
Hpy188III TCNNGA 4 cut(s) 137, 317, 340, 430
Hpy8I GTNNAC 2 cut(s) 232, 832
Hpy99I CGWCG 2 cut(s) 323, 542
HpyAV CCTTC 8 cut(s) 277, 293, 328, 337, 427, 448, 566, 596
HpyCH4III ACNGT 3 cut(s) 41, 145, 922
HpyCH4V TGCA 3 cut(s) 773, 872, 947
HpyF10VI GCNNNNNNNGC 2 cut(s) 628, 950
HpyF3I CTNAG 4 cut(s) 129, 237, 301, 474
Hsp92I GRCGYC 2 cut(s) 540, 549
Hsp92II CATG 6 cut(s) 28, 119, 253, 343, 862, 916
HspAI GCGC 1 cut(s) 631
KpnI GGTACC 1 cut(s) 427
KroI GCCGGC 1 cut(s) 542
KroNI GCCGGC 1 cut(s) 544
KspAI GTTAAC 1 cut(s) 232
Kzo9I GATC 1 cut(s) 313
LmnI GCTCC 6 cut(s) 184, 199, 296, 379, 597, 700
Lsp1109I GCAGC 1 cut(s) 931
LweI GCATC 2 cut(s) 67, 760
MaeI CTAG 1 cut(s) 371
MaeIII GTNAC 1 cut(s) 656
MalI GATC 1 cut(s) 315
MboI GATC 1 cut(s) 313
MboII GAAGA 4 cut(s) 56, 163, 335, 832
MfeI CAATTG 1 cut(s) 948
MflI RGATCY 1 cut(s) 313
MhlI GDGCHC 5 cut(s) 266, 384, 500, 624, 705
MlsI TGGCCA 1 cut(s) 209
MluCI AATT 3 cut(s) 175, 839, 948
MluNI TGGCCA 1 cut(s) 209
MmeI TCCRAC 1 cut(s) 318
Mox20I TGGCCA 1 cut(s) 209
MreI CGCCGGCG 1 cut(s) 542
MroNI GCCGGC 1 cut(s) 542
MroXI GAANNNNTTC 1 cut(s) 437
MscI TGGCCA 1 cut(s) 209
MseI TTAA 5 cut(s) 195, 222, 231, 648, 961
MslI CAYNNNNRTG 2 cut(s) 23, 734
Msp20I TGGCCA 1 cut(s) 209
MspI CCGG 4 cut(s) 506, 526, 543, 785
MspR9I CCNGG 5 cut(s) 506, 566, 762, 785, 887
MunI CAATTG 1 cut(s) 948
MvaI CCWGG 3 cut(s) 566, 762, 887
MwoI GCNNNNNNNGC 2 cut(s) 628, 950
NaeI GCCGGC 1 cut(s) 544
NciI CCSGG 2 cut(s) 506, 785
NdeII GATC 1 cut(s) 313
NgoMIV GCCGGC 1 cut(s) 542
NheI GCTAGC 1 cut(s) 370
NlaIII CATG 6 cut(s) 28, 119, 253, 343, 862, 916
NlaIV GGNNCC 3 cut(s) 425, 730, 897
NmuCI GTSAC 1 cut(s) 656
PagI TCATGA 1 cut(s) 339
PceI AGGCCT 3 cut(s) 219, 437, 876
PcsI WCGNNNNNNNCGW 1 cut(s) 546
PdiI GCCGGC 1 cut(s) 544
PdmI GAANNNNTTC 1 cut(s) 437
PfeI GAWTC 3 cut(s) 112, 403, 823
PflFI GACNNNGTC 1 cut(s) 575
PfoI TCCNGGA 1 cut(s) 564
PkrI GCNGC 2 cut(s) 548, 946
Psp124BI GAGCTC 1 cut(s) 384
Psp6I CCWGG 3 cut(s) 564, 760, 885
PspEI GGTNACC 1 cut(s) 656
PspGI CCWGG 3 cut(s) 564, 760, 885
PspN4I GGNNCC 3 cut(s) 425, 730, 897
PspPI GGNCC 1 cut(s) 508
PsuI RGATCY 1 cut(s) 313
PsyI GACNNNGTC 1 cut(s) 575
RsaI GTAC 3 cut(s) 329, 425, 689
RsaNI GTAC 3 cut(s) 328, 424, 688
RseI CAYNNNNRTG 2 cut(s) 23, 734
SacI GAGCTC 1 cut(s) 384
SaqAI TTAA 5 cut(s) 195, 222, 231, 648, 961
SatI GCNGC 2 cut(s) 547, 945
Sau3AI GATC 1 cut(s) 313
Sau96I GGNCC 1 cut(s) 508
ScrFI CCNGG 5 cut(s) 506, 566, 762, 785, 887
SduI GDGCHC 5 cut(s) 266, 384, 500, 624, 705
SfaNI GCATC 2 cut(s) 67, 760
SfcI CTRYAG 1 cut(s) 954
SgrAI CRCCGGYG 1 cut(s) 542
SinI GGWCC 1 cut(s) 508
SmiMI CAYNNNNRTG 2 cut(s) 23, 734
SmlI CTYRAG 5 cut(s) 275, 428, 596, 665, 878
SmoI CTYRAG 5 cut(s) 275, 428, 596, 665, 878
Sse9I AATT 3 cut(s) 175, 839, 948
SseBI AGGCCT 3 cut(s) 219, 437, 876
SsiI CCGC 1 cut(s) 546
SspMI CTAG 1 cut(s) 371
SstI GAGCTC 1 cut(s) 384
StuI AGGCCT 3 cut(s) 219, 437, 876
StyD4I CCNGG 5 cut(s) 504, 564, 760, 783, 885
StyI CCWWGG 2 cut(s) 652, 891
TaaI ACNGT 3 cut(s) 41, 145, 922
TaqI TCGA 2 cut(s) 318, 849
TasI AATT 3 cut(s) 175, 839, 948
TatI WGTACW 2 cut(s) 327, 687
TauI GCSGC 1 cut(s) 549
TfiI GAWTC 3 cut(s) 112, 403, 823
Tru1I TTAA 5 cut(s) 195, 222, 231, 648, 961
Tru9I TTAA 5 cut(s) 195, 222, 231, 648, 961
TscAI CASTG 3 cut(s) 133, 241, 586
TseFI GTSAC 1 cut(s) 656
TseI GCWGC 1 cut(s) 944
Tsp45I GTSAC 1 cut(s) 656
TspDTI ATGAA 4 cut(s) 356, 738, 875, 929
TspGWI ACGGA 1 cut(s) 483
TspRI CASTG 3 cut(s) 133, 241, 586
Tth111I GACNNNGTC 1 cut(s) 575
VpaK11BI GGWCC 1 cut(s) 508
XagI CCTNNNNNAGG 2 cut(s) 431, 515
XapI RAATTY 1 cut(s) 839
XcmI CCANNNNNNNNNTGG 2 cut(s) 133, 937
XmiI GTMKAC 1 cut(s) 831
XmnI GAANNNNTTC 1 cut(s) 437
XspI CTAG 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.