AT1G06225

CLAVATA3 ESR-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0019139
Physical Location & Seq
Forward (+)
1905918 .. 1906298
381 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G06225.1

Sequence Viewer

Length: 252 bp
ATGGCAAGTCTCAAGTTATGGGTTTGTTTGGTCCTGCTTCTAGTACTCGAATTGACATCGGTGCACGAATGTCGACCATTGGTTGCCGAAGAGAGATTTTCTGGTTCAAGTCGTTTGAAAAAGATAAGACGTGAACTTTTTGAGAGGTTAAAAGAGATGAAGGGGAGATCAGAAGGCGAAGAGACGATCCTTGGAAATACTCTTGACTCAAAGCGGCTTAGTCCCGGTGGTCCTGACCCGAGGCATCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.48

Weight (kDa)

9.18

Isoelectric Point (pI)

56.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019139)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06225 AT2G31081
fragaria_vesca FvH4_3g08100
prunus_persica Prupe.3G124600_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0272431
rosa_roxburghii Rroxscaffold_2G00115070
rosa_rugosa Rorug04G0449200
rosa_wichuraiana Rw2G027170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 73
AciI CCGC 1 cut(s) 214
AclWI GGATC 1 cut(s) 181
AfaI GTAC 1 cut(s) 45
AgsI TTSAA 2 cut(s) 108, 118
AjiI CACGTC 1 cut(s) 131
Alw21I GWGCWC 1 cut(s) 66
Alw26I GTCTC 2 cut(s) 14, 176
Alw44I GTGCAC 1 cut(s) 62
AlwI GGATC 1 cut(s) 181
Ama87I CYCGRG 1 cut(s) 238
ApaLI GTGCAC 1 cut(s) 62
AspS9I GGNCC 2 cut(s) 31, 230
AsuC2I CCSGG 1 cut(s) 225
AvaI CYCGRG 1 cut(s) 238
AvaII GGWCC 2 cut(s) 31, 230
BaeGI GKGCMC 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 66
BcgI CGANNNNNNTGC 2 cut(s) 53, 87
BcnI CCSGG 1 cut(s) 225
BcoDI GTCTC 2 cut(s) 14, 176
BfaI CTAG 1 cut(s) 41
BisI GCNGC 1 cut(s) 215
BlsI GCNGC 1 cut(s) 216
BmcAI AGTACT 1 cut(s) 45
Bme1390I CCNGG 1 cut(s) 225
Bme18I GGWCC 2 cut(s) 31, 230
BmeT110I CYCGRG 1 cut(s) 238
BmgBI CACGTC 1 cut(s) 131
BmgT120I GGNCC 2 cut(s) 31, 230
BmrFI CCNGG 1 cut(s) 225
BpuMI CCSGG 1 cut(s) 225
BsaJI CCNNGG 2 cut(s) 190, 239
BseDI CCNNGG 2 cut(s) 190, 239
BseSI GKGCMC 1 cut(s) 66
BsiHKAI GWGCWC 1 cut(s) 66
BsiHKCI CYCGRG 1 cut(s) 238
BsiSI CCGG 1 cut(s) 225
BslFI GGGAC 1 cut(s) 207
BsmAI GTCTC 2 cut(s) 14, 176
BsmBI CGTCTC 1 cut(s) 176
BsmFI GGGAC 1 cut(s) 207
BsoBI CYCGRG 1 cut(s) 238
Bsp1286I GDGCHC 1 cut(s) 66
Bsp143I GATC 2 cut(s) 167, 186
BspACI CCGC 1 cut(s) 214
BspPI GGATC 1 cut(s) 181
BssECI CCNNGG 2 cut(s) 190, 239
BssMI GATC 2 cut(s) 167, 186
BssT1I CCWWGG 1 cut(s) 190
Bst6I CTCTTC 2 cut(s) 84, 174
BstDEI CTNAG 1 cut(s) 218
BstKTI GATC 2 cut(s) 170, 189
BstMAI GTCTC 2 cut(s) 14, 176
BstMBI GATC 2 cut(s) 167, 186
BstSCI CCNGG 1 cut(s) 223
BstSLI GKGCMC 1 cut(s) 66
BtrI CACGTC 1 cut(s) 131
BtsIMutI CAGTG 1 cut(s) 247
Cfr13I GGNCC 2 cut(s) 31, 230
Csp6I GTAC 1 cut(s) 44
CviJI RGCY 1 cut(s) 217
CviKI_1 RGCY 1 cut(s) 217
CviQI GTAC 1 cut(s) 44
DdeI CTNAG 1 cut(s) 218
DpnI GATC 2 cut(s) 169, 188
DpnII GATC 2 cut(s) 167, 186
Eam1104I CTCTTC 2 cut(s) 84, 174
EarI CTCTTC 2 cut(s) 84, 174
Eco130I CCWWGG 1 cut(s) 190
Eco47I GGWCC 2 cut(s) 31, 230
Eco88I CYCGRG 1 cut(s) 238
EcoT14I CCWWGG 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 190
Esp3I CGTCTC 1 cut(s) 176
FaiI YATR 1 cut(s) 19
FaqI GGGAC 1 cut(s) 207
FblI GTMKAC 1 cut(s) 73
Fnu4HI GCNGC 1 cut(s) 215
Fsp4HI GCNGC 1 cut(s) 215
FspBI CTAG 1 cut(s) 41
GluI GCNGC 1 cut(s) 215
HapII CCGG 1 cut(s) 225
HincII GTYRAC 1 cut(s) 74
HindII GTYRAC 1 cut(s) 74
HinfI GANTC 1 cut(s) 206
HpaII CCGG 1 cut(s) 225
Hpy166II GTNNAC 3 cut(s) 64, 74, 134
Hpy188I TCNGA 1 cut(s) 172
Hpy188III TCNNGA 2 cut(s) 203, 233
Hpy8I GTNNAC 3 cut(s) 64, 74, 134
HpyAV CCTTC 2 cut(s) 154, 167
HpyCH4IV ACGT 1 cut(s) 130
HpyCH4V TGCA 1 cut(s) 64
HpyF3I CTNAG 1 cut(s) 218
HpySE526I ACGT 1 cut(s) 130
Kzo9I GATC 2 cut(s) 167, 186
LpnPI CCDG 4 cut(s) 47, 87, 238, 246
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 130
MalI GATC 2 cut(s) 169, 188
MboI GATC 2 cut(s) 167, 186
MboII GAAGA 2 cut(s) 101, 191
MhlI GDGCHC 1 cut(s) 66
MluCI AATT 1 cut(s) 50
MlyI GAGTC 1 cut(s) 200
MnlI CCTC 2 cut(s) 138, 234
MseI TTAA 1 cut(s) 149
MspI CCGG 1 cut(s) 225
MspR9I CCNGG 1 cut(s) 225
NciI CCSGG 1 cut(s) 225
NdeII GATC 2 cut(s) 167, 186
PkrI GCNGC 1 cut(s) 216
PleI GAGTC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 200
PspPI GGNCC 2 cut(s) 31, 230
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
SalI GTCGAC 1 cut(s) 72
SaqAI TTAA 1 cut(s) 149
SatI GCNGC 1 cut(s) 215
Sau3AI GATC 2 cut(s) 167, 186
Sau96I GGNCC 2 cut(s) 31, 230
ScaI AGTACT 1 cut(s) 45
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 1 cut(s) 225
SduI GDGCHC 1 cut(s) 66
SetI ASST 2 cut(s) 133, 149
SinI GGWCC 2 cut(s) 31, 230
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 1 cut(s) 50
SsiI CCGC 1 cut(s) 214
SspMI CTAG 1 cut(s) 41
StyD4I CCNGG 1 cut(s) 223
StyI CCWWGG 1 cut(s) 190
TaiI ACGT 1 cut(s) 133
TaqI TCGA 2 cut(s) 48, 73
TasI AATT 1 cut(s) 50
TatI WGTACW 1 cut(s) 43
TauI GCSGC 1 cut(s) 217
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TspDTI ATGAA 1 cut(s) 173
VneI GTGCAC 1 cut(s) 62
VpaK11BI GGWCC 2 cut(s) 31, 230
XmiI GTMKAC 1 cut(s) 73
XspI CTAG 1 cut(s) 41
ZrmI AGTACT 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.