AT2G31081

CLAVATA3 ESR-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0019139
Physical Location & Seq
Forward (+)
13238021 .. 13238628
608 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G31081.1

Sequence Viewer

Length: 243 bp
ATGGCAAGTTTCAAGTTATGGGTTTGCCTTATATTGCTTCTACTCGAGTTCTCGGTGCATCAATGCCGACCACTGGTTGCGGAAGAGAGCCCTTCAGATTCAGGTAACATAAGAAAGATTATGAGGGAACTTCTCAAAAGATCAGAAGAGCTGAAGGTAAGATCGAAAGACGGCCAAACGGTTCTAGGCACCCTTGATTCAAAGCGGCTCAGCCCTGGTGGGCCGGACCCTAGACATCACTAA

Protein Analysis

80

Amino Acids

9.05

Weight (kDa)

9.18

Isoelectric Point (pI)

67.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019139)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06225 AT2G31081
fragaria_vesca FvH4_3g08100
prunus_persica Prupe.3G124600_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0272431
rosa_roxburghii Rroxscaffold_2G00115070
rosa_rugosa Rorug04G0449200
rosa_wichuraiana Rw2G027170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 188
AciI CCGC 2 cut(s) 80, 205
AcoI YGGCCR 1 cut(s) 172
AcuI CTGAAG 2 cut(s) 78, 173
AfiI CCNNNNNNNGG 1 cut(s) 73
AgsI TTSAA 2 cut(s) 13, 201
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 1 cut(s) 151
AluI AGCT 1 cut(s) 151
Ama87I CYCGRG 1 cut(s) 44
AoxI GGCC 2 cut(s) 172, 221
AspS9I GGNCC 2 cut(s) 221, 226
AvaI CYCGRG 1 cut(s) 44
AvaII GGWCC 1 cut(s) 226
BanI GGYRCC 1 cut(s) 188
BanII GRGCYC 1 cut(s) 92
BceAI ACGGC 1 cut(s) 187
BciT130I CCWGG 1 cut(s) 216
BfaI CTAG 2 cut(s) 185, 231
BisI GCNGC 1 cut(s) 206
BlpI GCTNAGC 1 cut(s) 209
BlsI GCNGC 1 cut(s) 207
Bme1390I CCNGG 1 cut(s) 216
Bme18I GGWCC 1 cut(s) 226
BmeT110I CYCGRG 1 cut(s) 44
BmgT120I GGNCC 2 cut(s) 221, 226
BmiI GGNNCC 2 cut(s) 190, 228
BmrFI CCNGG 1 cut(s) 216
BmsI GCATC 1 cut(s) 67
Bpu1102I GCTNAGC 1 cut(s) 209
BsaJI CCNNGG 1 cut(s) 214
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse1I ACTGG 1 cut(s) 78
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 214
BseLI CCNNNNNNNGG 1 cut(s) 73
BseMII CTCAG 1 cut(s) 223
BseNI ACTGG 1 cut(s) 78
BshFI GGCC 2 cut(s) 174, 223
BshNI GGYRCC 1 cut(s) 188
BsiHKCI CYCGRG 1 cut(s) 44
BsiSI CCGG 1 cut(s) 224
BslI CCNNNNNNNGG 1 cut(s) 73
BsnI GGCC 2 cut(s) 174, 223
BsoBI CYCGRG 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 92
Bsp143I GATC 2 cut(s) 140, 161
Bsp1720I GCTNAGC 1 cut(s) 209
BspACI CCGC 2 cut(s) 80, 205
BspANI GGCC 2 cut(s) 174, 223
BspCNI CTCAG 1 cut(s) 222
BspLI GGNNCC 2 cut(s) 190, 228
BspQI GCTCTTC 1 cut(s) 141
BspT107I GGYRCC 1 cut(s) 188
BsrI ACTGG 1 cut(s) 78
BssECI CCNNGG 1 cut(s) 214
BssMI GATC 2 cut(s) 140, 161
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 2 cut(s) 78, 141
BstDEI CTNAG 1 cut(s) 209
BstKTI GATC 2 cut(s) 143, 164
BstMBI GATC 2 cut(s) 140, 161
BstNI CCWGG 1 cut(s) 216
BstSCI CCNGG 1 cut(s) 214
BsuRI GGCC 2 cut(s) 174, 223
BtsIMutI CAGTG 1 cut(s) 71
Cfr13I GGNCC 2 cut(s) 221, 226
CviJI RGCY 6 cut(s) 90, 151, 174, 208, 213, 223
CviKI_1 RGCY 6 cut(s) 90, 151, 174, 208, 213, 223
DdeI CTNAG 1 cut(s) 209
DpnI GATC 2 cut(s) 142, 163
DpnII GATC 2 cut(s) 140, 161
EaeI YGGCCR 1 cut(s) 172
Eam1104I CTCTTC 2 cut(s) 78, 141
EarI CTCTTC 2 cut(s) 78, 141
Eco24I GRGCYC 1 cut(s) 92
Eco47I GGWCC 1 cut(s) 226
Eco57I CTGAAG 2 cut(s) 78, 173
Eco88I CYCGRG 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 214
EcoT38I GRGCYC 1 cut(s) 92
FaiI YATR 4 cut(s) 19, 32, 110, 122
Fnu4HI GCNGC 1 cut(s) 206
FriOI GRGCYC 1 cut(s) 92
Fsp4HI GCNGC 1 cut(s) 206
FspBI CTAG 2 cut(s) 185, 231
GluI GCNGC 1 cut(s) 206
HaeIII GGCC 2 cut(s) 174, 223
HapII CCGG 1 cut(s) 224
HinfI GANTC 2 cut(s) 98, 197
HpaII CCGG 1 cut(s) 224
Hpy188I TCNGA 2 cut(s) 97, 145
HpyAV CCTTC 2 cut(s) 102, 148
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 1 cut(s) 58
HpyF3I CTNAG 1 cut(s) 209
Kzo9I GATC 2 cut(s) 140, 161
LguI GCTCTTC 1 cut(s) 141
LpnPI CCDG 5 cut(s) 59, 87, 201, 228, 237
LweI GCATC 1 cut(s) 67
MaeI CTAG 2 cut(s) 185, 231
MaeIII GTNAC 1 cut(s) 104
MalI GATC 2 cut(s) 142, 163
MboI GATC 2 cut(s) 140, 161
MboII GAAGA 2 cut(s) 95, 158
MhlI GDGCHC 1 cut(s) 92
MnlI CCTC 1 cut(s) 117
MspI CCGG 1 cut(s) 224
MspR9I CCNGG 1 cut(s) 216
MvaI CCWGG 1 cut(s) 216
NdeII GATC 2 cut(s) 140, 161
NlaIV GGNNCC 2 cut(s) 190, 228
PaeR7I CTCGAG 1 cut(s) 44
PciSI GCTCTTC 1 cut(s) 141
PfeI GAWTC 2 cut(s) 98, 197
PkrI GCNGC 1 cut(s) 207
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 2 cut(s) 190, 228
PspPI GGNCC 2 cut(s) 221, 226
PspXI VCTCGAGB 1 cut(s) 44
SapI GCTCTTC 1 cut(s) 141
SatI GCNGC 1 cut(s) 206
Sau3AI GATC 2 cut(s) 140, 161
Sau96I GGNCC 2 cut(s) 221, 226
ScrFI CCNGG 1 cut(s) 216
SduI GDGCHC 1 cut(s) 92
SetI ASST 3 cut(s) 106, 153, 159
SfaNI GCATC 1 cut(s) 67
Sfr274I CTCGAG 1 cut(s) 44
SinI GGWCC 1 cut(s) 226
SlaI CTCGAG 1 cut(s) 44
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
SsiI CCGC 2 cut(s) 80, 205
SspMI CTAG 2 cut(s) 185, 231
StyD4I CCNGG 1 cut(s) 214
TaaI ACNGT 1 cut(s) 181
TaqI TCGA 2 cut(s) 45, 164
TauI GCSGC 1 cut(s) 208
TfiI GAWTC 2 cut(s) 98, 197
TscAI CASTG 1 cut(s) 78
TspRI CASTG 1 cut(s) 78
VpaK11BI GGWCC 1 cut(s) 226
XhoI CTCGAG 1 cut(s) 44
XspI CTAG 2 cut(s) 185, 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.