Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0019139

Physical Location & Seq

Genomic Coordinates Reverse (-)

41216128 .. 41216364

Gene Structure 237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00115070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGCAAGGCTGAAGTACTTGTGGGTATGTCTGATCTTTGTGTTGTGCACATTCTCTAGGTCAGAAAGTCGGCCTCTTGTACCCTATCTTGAGAGGAAGAATCTAATTGGTACTAGGGCAGTCGTAGTACTGCGAGAAATATTGTTTCGAAAATCGAAAGAGCTCGAAGGTGCAGGGTTTCGGGGAGAAGATGACAAGCGACAAAGTCCTGGAGGACCTGACCCCCGTCATCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0007154 GO:0007267 GO:0008150 GO:0009888 GO:0009987 GO:0010073 GO:0010075 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0040008 GO:0045165 GO:0045168 GO:0048046 GO:0048507 GO:0048509 GO:0048638 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

78

Amino Acids

9.04

Weight (kDa)

9.91

Isoelectric Point (pI)

65.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06225 AT2G31081
fragaria_vesca	FvH4_3g08100
prunus_persica	Prupe.3G124600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0272431
rosa_roxburghii	Rroxscaffold_2G00115070
rosa_rugosa	Rorug04G0449200
rosa_wichuraiana	Rw2G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	32
AfaI	GTAC	4 cut(s)	17, 81, 112, 129
AjnI	CCWGG	1 cut(s)	208
AluBI	AGCT	1 cut(s)	163
AluI	AGCT	1 cut(s)	163
Alw21I	GWGCWC	2 cut(s)	50, 165
Alw44I	GTGCAC	1 cut(s)	46
AoxI	GGCC	1 cut(s)	71
ApaLI	GTGCAC	1 cut(s)	46
AspS9I	GGNCC	1 cut(s)	215
AsuII	TTCGAA	1 cut(s)	148
AvaII	GGWCC	1 cut(s)	215
BaeGI	GKGCMC	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	165
Bbv12I	GWGCWC	2 cut(s)	50, 165
BciT130I	CCWGG	1 cut(s)	210
BfaI	CTAG	2 cut(s)	57, 114
BmcAI	AGTACT	2 cut(s)	17, 129
Bme1390I	CCNGG	1 cut(s)	210
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	215
BmrFI	CCNGG	1 cut(s)	210
BoxI	GACNNNNGTC	1 cut(s)	225
BpmI	CTGGAG	1 cut(s)	231
Bpu14I	TTCGAA	1 cut(s)	148
BpuEI	CTTGAG	1 cut(s)	110
BseBI	CCWGG	1 cut(s)	210
BseSI	GKGCMC	1 cut(s)	50
BsgI	GTGCAG	1 cut(s)	192
BshFI	GGCC	1 cut(s)	73
BsiHKAI	GWGCWC	2 cut(s)	50, 165
BsnI	GGCC	1 cut(s)	73
Bsp119I	TTCGAA	1 cut(s)	148
Bsp1286I	GDGCHC	2 cut(s)	50, 165
Bsp143I	GATC	1 cut(s)	33
BspANI	GGCC	1 cut(s)	73
BspT104I	TTCGAA	1 cut(s)	148
BssMI	GATC	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	210
BstBI	TTCGAA	1 cut(s)	148
BstKTI	GATC	1 cut(s)	36
BstMBI	GATC	1 cut(s)	33
BstNI	CCWGG	1 cut(s)	210
BstPAI	GACNNNNGTC	1 cut(s)	225
BstSCI	CCNGG	1 cut(s)	208
BstSLI	GKGCMC	1 cut(s)	50
BsuRI	GGCC	1 cut(s)	73
BtsIMutI	CAGTG	1 cut(s)	232
Cfr13I	GGNCC	1 cut(s)	215
Csp6I	GTAC	4 cut(s)	16, 80, 111, 128
CviJI	RGCY	3 cut(s)	10, 73, 163
CviKI_1	RGCY	3 cut(s)	10, 73, 163
CviQI	GTAC	4 cut(s)	16, 80, 111, 128
DpnI	GATC	1 cut(s)	35
DpnII	GATC	1 cut(s)	33
Ecl136II	GAGCTC	1 cut(s)	163
Eco24I	GRGCYC	1 cut(s)	165
Eco47I	GGWCC	1 cut(s)	215
Eco53kI	GAGCTC	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	32
EcoICRI	GAGCTC	1 cut(s)	163
EcoO109I	RGGNCCY	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	165
FaiI	YATR	1 cut(s)	28
FriOI	GRGCYC	1 cut(s)	165
FspBI	CTAG	2 cut(s)	57, 114
GsuI	CTGGAG	1 cut(s)	231
HaeIII	GGCC	1 cut(s)	73
HinfI	GANTC	1 cut(s)	100
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	2 cut(s)	33, 64
Hpy188III	TCNNGA	1 cut(s)	89
Hpy8I	GTNNAC	1 cut(s)	48
HpyAV	CCTTC	1 cut(s)	161
HpyCH4V	TGCA	2 cut(s)	48, 173
Kzo9I	GATC	1 cut(s)	33
LpnPI	CCDG	4 cut(s)	159, 195, 222, 231
MaeI	CTAG	2 cut(s)	57, 114
MalI	GATC	1 cut(s)	35
MboI	GATC	1 cut(s)	33
MboII	GAAGA	2 cut(s)	109, 200
MhlI	GDGCHC	2 cut(s)	50, 165
MluCI	AATT	1 cut(s)	105
MnlI	CCTC	3 cut(s)	84, 87, 206
MspR9I	CCNGG	1 cut(s)	210
MvaI	CCWGG	1 cut(s)	210
NdeII	GATC	1 cut(s)	33
NspV	TTCGAA	1 cut(s)	148
PfeI	GAWTC	1 cut(s)	100
PflFI	GACNNNGTC	1 cut(s)	204
PfoI	TCCNGGA	1 cut(s)	208
PpuMI	RGGWCCY	1 cut(s)	215
PshAI	GACNNNNGTC	1 cut(s)	225
Psp124BI	GAGCTC	1 cut(s)	165
Psp5II	RGGWCCY	1 cut(s)	215
Psp6I	CCWGG	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	208
PspPI	GGNCC	1 cut(s)	215
PspPPI	RGGWCCY	1 cut(s)	215
PsyI	GACNNNGTC	1 cut(s)	204
RsaI	GTAC	4 cut(s)	17, 81, 112, 129
RsaNI	GTAC	4 cut(s)	16, 80, 111, 128
SacI	GAGCTC	1 cut(s)	165
Sau3AI	GATC	1 cut(s)	33
Sau96I	GGNCC	1 cut(s)	215
ScaI	AGTACT	2 cut(s)	17, 129
ScrFI	CCNGG	1 cut(s)	210
SduI	GDGCHC	2 cut(s)	50, 165
SetI	ASST	4 cut(s)	62, 165, 172, 220
SfuI	TTCGAA	1 cut(s)	148
SinI	GGWCC	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	1 cut(s)	105
SspI	AATATT	1 cut(s)	141
SspMI	CTAG	2 cut(s)	57, 114
SstI	GAGCTC	1 cut(s)	165
StyD4I	CCNGG	1 cut(s)	208
TaqI	TCGA	3 cut(s)	148, 155, 165
TasI	AATT	1 cut(s)	105
TatI	WGTACW	2 cut(s)	15, 127
TfiI	GAWTC	1 cut(s)	100
Tth111I	GACNNNGTC	1 cut(s)	204
VneI	GTGCAC	1 cut(s)	46
VpaK11BI	GGWCC	1 cut(s)	215
XspI	CTAG	2 cut(s)	57, 114
ZrmI	AGTACT	2 cut(s)	17, 129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.